RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 EPHB6O15197 1021 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 SMIM24O75264 130 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 ENTPD3O75355 529 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 SLC4A1P02730 911 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 WEE2P0C1S8 567 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 ELF1P32519 619 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 SHMT1P34896 483 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 SLC29A2Q14542 456 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 JAMLQ86YT9 394 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 RHOT1Q8IXI2 618 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 FAM151AQ8WW52 585 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 CASKIN2Q8WXE0 1202 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 CHMP6Q96FZ7 201 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 UNC45AQ9H3U1 944 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 DIS3Q9Y2L1 958 aaKnown RBP12.45□□□□□ -0.42
SYNPO-204ENST00000519664 GIPC1O14908 333 aa12.44□□□□□ -0.42
SYNPO-204ENST00000519664 GRAP2O75791 330 aa12.44□□□□□ -0.42
SYNPO-204ENST00000519664 KITP10721 976 aa12.44□□□□□ -0.42
SYNPO-204ENST00000519664 ARSEP51690 589 aa12.44□□□□□ -0.42
SYNPO-204ENST00000519664 ARMC9Q7Z3E5 817 aa12.44□□□□□ -0.42
SYNPO-204ENST00000519664 SH3RF1Q7Z6J0 888 aa12.44□□□□□ -0.42
SYNPO-204ENST00000519664 COL23A1Q86Y22 540 aaPredicted RBP12.44□□□□□ -0.42
SYNPO-204ENST00000519664 MMGT1Q8N4V1 131 aa12.44□□□□□ -0.42
SYNPO-204ENST00000519664 TPCN2Q8NHX9 752 aa12.44□□□□□ -0.42
SYNPO-204ENST00000519664 PFDN4Q9NQP4 134 aa12.44□□□□□ -0.42
SYNPO-204ENST00000519664 M0QYV0 167 aa12.44□□□□□ -0.42
SYNPO-204ENST00000519664 EIF3HO15372 352 aaKnown RBP eCLIP12.44□□□□□ -0.42
SYNPO-204ENST00000519664 STAT5BP51692 787 aa12.44□□□□□ -0.42
SYNPO-204ENST00000519664 ATG4AQ8WYN0 398 aa12.44□□□□□ -0.42
SYNPO-204ENST00000519664 PRMT1Q99873 361 aaKnown RBP12.44□□□□□ -0.42
SYNPO-204ENST00000519664 RIC1Q4ADV7 1423 aa12.44□□□□□ -0.42
SYNPO-204ENST00000519664 FAM86B1E9PN63 330 aa12.44□□□□□ -0.42
SYNPO-204ENST00000519664 SLC16A3O15427 465 aaKnown RBP12.44□□□□□ -0.42
SYNPO-204ENST00000519664 FAM86B2P0C5J1 330 aa12.44□□□□□ -0.42
SYNPO-204ENST00000519664 ITGA4P13612 1032 aa12.44□□□□□ -0.42
SYNPO-204ENST00000519664 SERPINB6P35237 376 aa12.44□□□□□ -0.42
SYNPO-204ENST00000519664 MYO1EQ12965 1108 aa12.44□□□□□ -0.42
SYNPO-204ENST00000519664 FAM102AQ5T9C2 384 aaPredicted RBP12.44□□□□□ -0.42
SYNPO-204ENST00000519664 PAPD7Q5XG87 772 aaKnown RBP12.44□□□□□ -0.42
SYNPO-204ENST00000519664 LRRC71Q8N4P6 559 aa12.44□□□□□ -0.42
SYNPO-204ENST00000519664 SLC13A1Q9BZW2 595 aa12.44□□□□□ -0.42
SYNPO-204ENST00000519664 KIAA1586Q9HCI6 787 aa12.44□□□□□ -0.42
SYNPO-204ENST00000519664 FAM187AA6NFU0 413 aa12.44□□□□□ -0.42
SYNPO-204ENST00000519664 NFIBO00712 420 aa12.44□□□□□ -0.42
SYNPO-204ENST00000519664 ZKSCAN4Q969J2 545 aaPredicted RBP12.44□□□□□ -0.42
SYNPO-204ENST00000519664 RBM41Q96IZ5 413 aaKnown RBP12.44□□□□□ -0.42
SYNPO-204ENST00000519664 KLF6Q99612 283 aaPredicted RBP12.44□□□□□ -0.42
SYNPO-204ENST00000519664 AFG3L2Q9Y4W6 797 aa12.44□□□□□ -0.42
SYNPO-204ENST00000519664 TCP11X1B4DZS4 312 aa12.43□□□□□ -0.42
SYNPO-204ENST00000519664 PPP1R12AO14974 1030 aaPredicted RBP12.43□□□□□ -0.42
SYNPO-204ENST00000519664 GGPS1O95749 300 aa12.43□□□□□ -0.42
SYNPO-204ENST00000519664 CIITAP33076 1130 aa12.43□□□□□ -0.42
SYNPO-204ENST00000519664 TPD52P55327 224 aaPredicted RBP12.43□□□□□ -0.42
SYNPO-204ENST00000519664 CCNA1P78396 465 aa12.43□□□□□ -0.42
SYNPO-204ENST00000519664 SPARCL1Q14515 664 aa12.43□□□□□ -0.42
SYNPO-204ENST00000519664 C1orf228Q6PIY5 440 aa12.43□□□□□ -0.42
SYNPO-204ENST00000519664 KCNV2Q8TDN2 545 aa12.43□□□□□ -0.42
SYNPO-204ENST00000519664 TGS1Q96RS0 853 aaKnown RBP12.43□□□□□ -0.42
SYNPO-204ENST00000519664 SIGLEC1Q9BZZ2 1709 aa12.43□□□□□ -0.42
SYNPO-204ENST00000519664 CSPG5O95196 566 aa12.43□□□□□ -0.42
SYNPO-204ENST00000519664 CHN1P15882 459 aa12.43□□□□□ -0.42
SYNPO-204ENST00000519664 DUOXA2Q1HG44 320 aa12.43□□□□□ -0.42
SYNPO-204ENST00000519664 SMTNL2Q2TAL5 461 aa12.43□□□□□ -0.42
SYNPO-204ENST00000519664 RSBN1LQ6PCB5 846 aaPredicted RBP12.43□□□□□ -0.42
SYNPO-204ENST00000519664 C4orf33Q8N1A6 199 aa12.43□□□□□ -0.42
SYNPO-204ENST00000519664 NSMCE1Q8WV22 266 aa12.43□□□□□ -0.42
SYNPO-204ENST00000519664 SLC10A4Q96EP9 437 aa12.43□□□□□ -0.42
SYNPO-204ENST00000519664 TRIM4Q9C037 500 aa12.43□□□□□ -0.42
SYNPO-204ENST00000519664 JCADQ9P266 1359 aa12.43□□□□□ -0.42
SYNPO-204ENST00000519664 RCCD1A6NED2 376 aa12.43□□□□□ -0.42
SYNPO-204ENST00000519664 SGPL1O95470 568 aa12.43□□□□□ -0.42
SYNPO-204ENST00000519664 HSD17B3P37058 310 aa12.43□□□□□ -0.42
SYNPO-204ENST00000519664 GPC3P51654 580 aa12.43□□□□□ -0.42
SYNPO-204ENST00000519664 ARL4CP56559 192 aa12.43□□□□□ -0.42
SYNPO-204ENST00000519664 TMPRSS15P98073 1019 aa12.43□□□□□ -0.42
SYNPO-204ENST00000519664 RPS6KA2Q15349 733 aa12.43□□□□□ -0.42
SYNPO-204ENST00000519664 RFX8Q6ZV50 586 aa12.43□□□□□ -0.42
SYNPO-204ENST00000519664 SPATA24Q86W54 205 aa12.43□□□□□ -0.42
SYNPO-204ENST00000519664 HACE1Q8IYU2 909 aa12.43□□□□□ -0.42
SYNPO-204ENST00000519664 ZNF473Q8WTR7 871 aaKnown RBP12.43□□□□□ -0.42
SYNPO-204ENST00000519664 SPATA33Q96N06 139 aa12.43□□□□□ -0.42
SYNPO-204ENST00000519664 CYTH2Q99418 400 aa12.43□□□□□ -0.42
SYNPO-204ENST00000519664 PDE2AO00408 941 aaPredicted RBP12.42□□□□□ -0.42
SYNPO-204ENST00000519664 DGAT1O75907 488 aa12.42□□□□□ -0.42
SYNPO-204ENST00000519664 GSTA1P08263 222 aa12.42□□□□□ -0.42
SYNPO-204ENST00000519664 GSTA2P09210 222 aa12.42□□□□□ -0.42
SYNPO-204ENST00000519664 RGS7P49802 495 aa12.42□□□□□ -0.42
SYNPO-204ENST00000519664 PRKCEQ02156 737 aa12.42□□□□□ -0.42
SYNPO-204ENST00000519664 SLC20A1Q8WUM9 679 aa12.42□□□□□ -0.42
SYNPO-204ENST00000519664 SPIRE2Q8WWL2 714 aa12.42□□□□□ -0.42
SYNPO-204ENST00000519664 ERP44Q9BS26 406 aa12.42□□□□□ -0.42
SYNPO-204ENST00000519664 MAP3K6O95382 1288 aa12.42□□□□□ -0.42
SYNPO-204ENST00000519664 ESRRAP11474 423 aaPredicted RBP12.42□□□□□ -0.42
SYNPO-204ENST00000519664 CDH6P55285 790 aa12.42□□□□□ -0.42
SYNPO-204ENST00000519664 SH3BGRP55822 239 aaPredicted RBP12.42□□□□□ -0.42
SYNPO-204ENST00000519664 NCOA4Q13772 614 aa12.42□□□□□ -0.42
SYNPO-204ENST00000519664 WDR93Q6P2C0 686 aa12.42□□□□□ -0.42
SYNPO-204ENST00000519664 DHX38Q92620 1227 aaKnown RBP12.42□□□□□ -0.42
SYNPO-204ENST00000519664 RBM15Q96T37 977 aaKnown RBP eCLIP12.42□□□□□ -0.42
SYNPO-204ENST00000519664 TEX13BQ9BXU2 312 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms