RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 SPRED1Q7Z699 444 aa6.45□□□□□ -1.38
NUP54-218ENST00000515460 NGEFQ8N5V2 710 aa6.45□□□□□ -1.38
NUP54-218ENST00000515460 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.45□□□□□ -1.38
NUP54-218ENST00000515460 SH3RF3Q8TEJ3 882 aaPredicted RBP6.45□□□□□ -1.38
NUP54-218ENST00000515460 OSBP2Q969R2 916 aa6.45□□□□□ -1.38
NUP54-218ENST00000515460 TMEM209Q96SK2 561 aa6.45□□□□□ -1.38
NUP54-218ENST00000515460 ALG1Q9BT22 464 aa6.45□□□□□ -1.38
NUP54-218ENST00000515460 JAM3Q9BX67 310 aa6.45□□□□□ -1.38
NUP54-218ENST00000515460 CCDC113Q9H0I3 377 aa6.45□□□□□ -1.38
NUP54-218ENST00000515460 SIRPGQ9P1W8 387 aa6.45□□□□□ -1.38
NUP54-218ENST00000515460 WASF3Q9UPY6 502 aa6.45□□□□□ -1.38
NUP54-218ENST00000515460 RRP7AQ9Y3A4 280 aaKnown RBP6.45□□□□□ -1.38
NUP54-218ENST00000515460 PTCH2Q9Y6C5 1203 aa6.45□□□□□ -1.38
NUP54-218ENST00000515460 NAV2Q8IVL1 2488 aa6.45□□□□□ -1.38
NUP54-218ENST00000515460 PTPRZ1P23471 2315 aaPredicted RBP6.44□□□□□ -1.38
NUP54-218ENST00000515460 SNED1Q8TER0 1413 aa6.44□□□□□ -1.38
NUP54-218ENST00000515460 ZFHX2Q9C0A1 2572 aaPredicted RBP6.44□□□□□ -1.38
NUP54-218ENST00000515460 SMIM22K7EJ46 135 aa6.44□□□□□ -1.38
NUP54-218ENST00000515460 B4GALT4O60513 344 aa6.44□□□□□ -1.38
NUP54-218ENST00000515460 MSCO60682 206 aa6.44□□□□□ -1.38
NUP54-218ENST00000515460 CCDC172P0C7W6 258 aa6.44□□□□□ -1.38
NUP54-218ENST00000515460 GNAT1P11488 350 aa6.44□□□□□ -1.38
NUP54-218ENST00000515460 GTF2F1P35269 517 aaKnown RBP eCLIP6.44□□□□□ -1.38
NUP54-218ENST00000515460 HDAC1Q13547 482 aaPredicted RBP6.44□□□□□ -1.38
NUP54-218ENST00000515460 SUSD4Q5VX71 490 aa6.44□□□□□ -1.38
NUP54-218ENST00000515460 TRMT10BQ6PF06 316 aaKnown RBP6.44□□□□□ -1.38
NUP54-218ENST00000515460 PLEKHH3Q7Z736 793 aa6.44□□□□□ -1.38
NUP54-218ENST00000515460 KBTBD2Q8IY47 623 aa6.44□□□□□ -1.38
NUP54-218ENST00000515460 ZNF34Q8IZ26 560 aa6.44□□□□□ -1.38
NUP54-218ENST00000515460 MNS1Q8NEH6 495 aa6.44□□□□□ -1.38
NUP54-218ENST00000515460 PIP4K2CQ8TBX8 421 aa6.44□□□□□ -1.38
NUP54-218ENST00000515460 IGDCC4Q8TDY8 1250 aa6.44□□□□□ -1.38
NUP54-218ENST00000515460 PPM1EQ8WY54 764 aa6.44□□□□□ -1.38
NUP54-218ENST00000515460 KISS1RQ969F8 398 aaPredicted RBP6.44□□□□□ -1.38
NUP54-218ENST00000515460 TIGD1Q96MW7 591 aa6.44□□□□□ -1.38
NUP54-218ENST00000515460 FAM210AQ96ND0 272 aa6.44□□□□□ -1.38
NUP54-218ENST00000515460 PLEKHF1Q96S99 279 aa6.44□□□□□ -1.38
NUP54-218ENST00000515460 CDC6Q99741 560 aa6.44□□□□□ -1.38
NUP54-218ENST00000515460 NCAPGQ9BPX3 1015 aa6.44□□□□□ -1.38
NUP54-218ENST00000515460 CDIP1Q9H305 208 aa6.44□□□□□ -1.38
NUP54-218ENST00000515460 ADARB2Q9NS39 739 aaKnown RBP6.44□□□□□ -1.38
NUP54-218ENST00000515460 CALCOCO1Q9P1Z2 691 aa6.44□□□□□ -1.38
NUP54-218ENST00000515460 ASH2LQ9UBL3 628 aa6.44□□□□□ -1.38
NUP54-218ENST00000515460 FTSJ1Q9UET6 329 aa6.44□□□□□ -1.38
NUP54-218ENST00000515460 PGAP2Q9UHJ9 254 aa6.44□□□□□ -1.38
NUP54-218ENST00000515460 COL4A5P29400 1685 aa6.44□□□□□ -1.38
NUP54-218ENST00000515460 XIRP2A4UGR9 3374 aa6.44□□□□□ -1.38
NUP54-218ENST00000515460 UBR2Q8IWV8 1755 aa6.44□□□□□ -1.38
NUP54-218ENST00000515460 COL11A2P13942 1736 aaPredicted RBP6.43□□□□□ -1.38
NUP54-218ENST00000515460 ADM5C9JUS6 153 aa6.43□□□□□ -1.38
NUP54-218ENST00000515460 FAM47E-STBD1D6RA91 191 aa6.43□□□□□ -1.38
NUP54-218ENST00000515460 C1QTNF3-AMACRE9PGA6 284 aa6.43□□□□□ -1.38
NUP54-218ENST00000515460 TULP2O00295 520 aa6.43□□□□□ -1.38
NUP54-218ENST00000515460 MYL6BP14649 208 aa6.43□□□□□ -1.38
NUP54-218ENST00000515460 GPTP24298 496 aa6.43□□□□□ -1.38
NUP54-218ENST00000515460 GRIN1Q05586 938 aa6.43□□□□□ -1.38
NUP54-218ENST00000515460 GABPB1Q06547 395 aaPredicted RBP6.43□□□□□ -1.38
NUP54-218ENST00000515460 SSRP1Q08945 709 aaKnown RBP6.43□□□□□ -1.38
NUP54-218ENST00000515460 ICAM4Q14773 271 aa6.43□□□□□ -1.38
NUP54-218ENST00000515460 KCNT2Q6UVM3 1135 aa6.43□□□□□ -1.38
NUP54-218ENST00000515460 OTOP3Q7RTS5 596 aa6.43□□□□□ -1.38
NUP54-218ENST00000515460 LRP10Q7Z4F1 713 aa6.43□□□□□ -1.38
NUP54-218ENST00000515460 SCUBE1Q8IWY4 988 aa6.43□□□□□ -1.38
NUP54-218ENST00000515460 RBM12BQ8IXT5 1001 aaKnown RBP6.43□□□□□ -1.38
NUP54-218ENST00000515460 TMTC2Q8N394 836 aa6.43□□□□□ -1.38
NUP54-218ENST00000515460 SLC16A11Q8NCK7 471 aa6.43□□□□□ -1.38
NUP54-218ENST00000515460 TTLL11Q8NHH1 800 aa6.43□□□□□ -1.38
NUP54-218ENST00000515460 ZCCHC14Q8WYQ9 949 aaKnown RBP6.43□□□□□ -1.38
NUP54-218ENST00000515460 MBD6Q96DN6 1003 aa6.43□□□□□ -1.38
NUP54-218ENST00000515460 PTPN18Q99952 460 aa6.43□□□□□ -1.38
NUP54-218ENST00000515460 THUMPD2Q9BTF0 503 aaKnown RBP6.43□□□□□ -1.38
NUP54-218ENST00000515460 NYXQ9GZU5 481 aa6.43□□□□□ -1.38
NUP54-218ENST00000515460 CGNQ9P2M7 1197 aaKnown RBP6.43□□□□□ -1.38
NUP54-218ENST00000515460 NCOR2Q9Y618 2525 aa6.43□□□□□ -1.38
NUP54-218ENST00000515460 MAP3K15Q6ZN16 1313 aa6.43□□□□□ -1.38
NUP54-218ENST00000515460 UBN2Q6ZU65 1347 aa6.43□□□□□ -1.38
NUP54-218ENST00000515460 KIF16BQ96L93 1317 aa6.43□□□□□ -1.38
NUP54-218ENST00000515460 ABCC12Q96J65 1359 aa6.43□□□□□ -1.38
NUP54-218ENST00000515460 ACACBO00763 2458 aa6.42□□□□□ -1.38
NUP54-218ENST00000515460 SHTN1A0MZ66 631 aa6.42□□□□□ -1.38
NUP54-218ENST00000515460 AQP7O14520 342 aa6.42□□□□□ -1.38
NUP54-218ENST00000515460 SLC27A2O14975 620 aa6.42□□□□□ -1.38
NUP54-218ENST00000515460 NTSR2O95665 410 aa6.42□□□□□ -1.38
NUP54-218ENST00000515460 SOD2P04179 222 aa6.42□□□□□ -1.38
NUP54-218ENST00000515460 NEFHP12036 1026 aa6.42□□□□□ -1.38
NUP54-218ENST00000515460 ITGB8P26012 769 aa6.42□□□□□ -1.38
NUP54-218ENST00000515460 TM4SF4P48230 202 aa6.42□□□□□ -1.38
NUP54-218ENST00000515460 PPP2CBP62714 309 aa6.42□□□□□ -1.38
NUP54-218ENST00000515460 PPP2CAP67775 309 aa6.42□□□□□ -1.38
NUP54-218ENST00000515460 NTRK3Q16288 839 aa6.42□□□□□ -1.38
NUP54-218ENST00000515460 SLC10A5Q5PT55 438 aa6.42□□□□□ -1.38
NUP54-218ENST00000515460 ARHGEF18Q6ZSZ5 1173 aa6.42□□□□□ -1.38
NUP54-218ENST00000515460 SPATC1Q76KD6 591 aa6.42□□□□□ -1.38
NUP54-218ENST00000515460 MAMDC2Q7Z304 686 aaPredicted RBP6.42□□□□□ -1.38
NUP54-218ENST00000515460 EXOC8Q8IYI6 725 aa6.42□□□□□ -1.38
NUP54-218ENST00000515460 PNISRQ8TF01 805 aaKnown RBP6.42□□□□□ -1.38
NUP54-218ENST00000515460 JDP2Q8WYK2 163 aa6.42□□□□□ -1.38
NUP54-218ENST00000515460 RBM17Q96I25 401 aaKnown RBP6.42□□□□□ -1.38
NUP54-218ENST00000515460 CRAMP1Q96RY5 1269 aa6.42□□□□□ -1.38
NUP54-218ENST00000515460 MYH16Q9H6N6 1097 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms