RNA–Protein interactions for RNA: ENST00000514830.5

PDLIM5-220, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 802 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-220ENST00000514830 CPSF3Q9UKF6 684 aaKnown RBP13.06□□□□□ -0.32
PDLIM5-220ENST00000514830 USP20Q9Y2K6 914 aa13.06□□□□□ -0.32
PDLIM5-220ENST00000514830 TDRD15B5MCY1 1934 aaKnown RBP13.05□□□□□ -0.32
PDLIM5-220ENST00000514830 ENPP3O14638 875 aa13.05□□□□□ -0.32
PDLIM5-220ENST00000514830 CLIC2O15247 247 aa13.05□□□□□ -0.32
PDLIM5-220ENST00000514830 INPPL1O15357 1258 aa13.05□□□□□ -0.32
PDLIM5-220ENST00000514830 NPTXRO95502 500 aa13.05□□□□□ -0.32
PDLIM5-220ENST00000514830 ACTN1P12814 892 aa13.05□□□□□ -0.32
PDLIM5-220ENST00000514830 PRKCSHP14314 528 aaPredicted RBP13.05□□□□□ -0.32
PDLIM5-220ENST00000514830 STX17P56962 302 aa13.05□□□□□ -0.32
PDLIM5-220ENST00000514830 TCTN1Q2MV58 587 aa13.05□□□□□ -0.32
PDLIM5-220ENST00000514830 CDKAL1Q5VV42 579 aa13.05□□□□□ -0.32
PDLIM5-220ENST00000514830 PSRC1Q6PGN9 363 aaPredicted RBP13.05□□□□□ -0.32
PDLIM5-220ENST00000514830 FRMD5Q7Z6J6 570 aa13.05□□□□□ -0.32
PDLIM5-220ENST00000514830 DEFB128Q7Z7B8 93 aa13.05□□□□□ -0.32
PDLIM5-220ENST00000514830 ZNF598Q86UK7 904 aaKnown RBP13.05□□□□□ -0.32
PDLIM5-220ENST00000514830 HACE1Q8IYU2 909 aa13.05□□□□□ -0.32
PDLIM5-220ENST00000514830 DEFB123Q8N688 67 aa13.05□□□□□ -0.32
PDLIM5-220ENST00000514830 SMG8Q8ND04 991 aaKnown RBP13.05□□□□□ -0.32
PDLIM5-220ENST00000514830 BORCS6Q96GS4 357 aa13.05□□□□□ -0.32
PDLIM5-220ENST00000514830 MFSD14AQ96MC6 490 aa13.05□□□□□ -0.32
PDLIM5-220ENST00000514830 EIF2AQ9BY44 585 aaKnown RBP13.05□□□□□ -0.32
PDLIM5-220ENST00000514830 TRIM6Q9C030 488 aaPredicted RBP13.05□□□□□ -0.32
PDLIM5-220ENST00000514830 PLEKHA5Q9HAU0 1116 aa13.05□□□□□ -0.32
PDLIM5-220ENST00000514830 CBX8Q9HC52 389 aa13.05□□□□□ -0.32
PDLIM5-220ENST00000514830 UBN1Q9NPG3 1134 aa13.05□□□□□ -0.32
PDLIM5-220ENST00000514830 FRMD4BQ9Y2L6 1034 aa13.05□□□□□ -0.32
PDLIM5-220ENST00000514830 NFE2L3Q9Y4A8 694 aa13.05□□□□□ -0.32
PDLIM5-220ENST00000514830 IPPQ9Y573 584 aa13.05□□□□□ -0.32
PDLIM5-220ENST00000514830 PCDHB2Q9Y5E7 798 aa13.05□□□□□ -0.32
PDLIM5-220ENST00000514830 FNDC1Q4ZHG4 1894 aaPredicted RBP13.05□□□□□ -0.32
PDLIM5-220ENST00000514830 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.04□□□□□ -0.32
PDLIM5-220ENST00000514830 ZNF233A6NK53 670 aa13.04□□□□□ -0.32
PDLIM5-220ENST00000514830 EXOC3O60645 756 aa13.04□□□□□ -0.32
PDLIM5-220ENST00000514830 AKAP3O75969 853 aa13.04□□□□□ -0.32
PDLIM5-220ENST00000514830 STAG3L1P0CL83 205 aa13.04□□□□□ -0.32
PDLIM5-220ENST00000514830 ZNF18P17022 549 aa13.04□□□□□ -0.32
PDLIM5-220ENST00000514830 ATF7P17544 494 aaPredicted RBP13.04□□□□□ -0.32
PDLIM5-220ENST00000514830 PSMC2P35998 433 aaKnown RBP13.04□□□□□ -0.32
PDLIM5-220ENST00000514830 MATR3P43243 847 aaKnown RBP eCLIP13.04□□□□□ -0.322e-6■■■■□ 23.9
PDLIM5-220ENST00000514830 CLDN10P78369 228 aa13.04□□□□□ -0.32
PDLIM5-220ENST00000514830 SNRNP35Q16560 246 aaKnown RBP13.04□□□□□ -0.32
PDLIM5-220ENST00000514830 XKR4Q5GH76 650 aa13.04□□□□□ -0.32
PDLIM5-220ENST00000514830 ALKAL1Q6UXT8 129 aa13.04□□□□□ -0.32
PDLIM5-220ENST00000514830 INTS8Q75QN2 995 aaKnown RBP13.04□□□□□ -0.32
PDLIM5-220ENST00000514830 C16orf59Q7L2K0 433 aa13.04□□□□□ -0.32
PDLIM5-220ENST00000514830 ZBTB33Q86T24 672 aa13.04□□□□□ -0.32
PDLIM5-220ENST00000514830 CDR2LQ86X02 465 aaPredicted RBP13.04□□□□□ -0.32
PDLIM5-220ENST00000514830 ECHDC2Q86YB7 292 aa13.04□□□□□ -0.32
PDLIM5-220ENST00000514830 IRF2BP1Q8IU81 584 aa13.04□□□□□ -0.32
PDLIM5-220ENST00000514830 FAM114A1Q8IWE2 563 aa13.04□□□□□ -0.32
PDLIM5-220ENST00000514830 BRSK2Q8IWQ3 736 aa13.04□□□□□ -0.32
PDLIM5-220ENST00000514830 CD302Q8IX05 232 aa13.04□□□□□ -0.32
PDLIM5-220ENST00000514830 PGBD4Q96DM1 585 aa13.04□□□□□ -0.32
PDLIM5-220ENST00000514830 CCDC94Q9BW85 323 aaPredicted RBP13.04□□□□□ -0.32
PDLIM5-220ENST00000514830 SRRTQ9BXP5 876 aaKnown RBP13.04□□□□□ -0.32
PDLIM5-220ENST00000514830 HSD3B7Q9H2F3 369 aa13.04□□□□□ -0.32
PDLIM5-220ENST00000514830 ASB7Q9H672 318 aa13.04□□□□□ -0.32
PDLIM5-220ENST00000514830 METTL14Q9HCE5 456 aaKnown RBP13.04□□□□□ -0.32
PDLIM5-220ENST00000514830 TMEM161AQ9NX61 479 aa13.04□□□□□ -0.32
PDLIM5-220ENST00000514830 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.04□□□□□ -0.32
PDLIM5-220ENST00000514830 COL4A6Q14031 1691 aa13.04□□□□□ -0.32
PDLIM5-220ENST00000514830 TTC26A0AVF1 554 aa13.03□□□□□ -0.32
PDLIM5-220ENST00000514830 IL18RAPO95256 599 aa13.03□□□□□ -0.32
PDLIM5-220ENST00000514830 EEF1GP26641 437 aaKnown RBP13.03□□□□□ -0.32
PDLIM5-220ENST00000514830 CYP2J2P51589 502 aa13.03□□□□□ -0.32
PDLIM5-220ENST00000514830 SPAG1Q07617 926 aa13.03□□□□□ -0.32
PDLIM5-220ENST00000514830 CYP24A1Q07973 514 aa13.03□□□□□ -0.32
PDLIM5-220ENST00000514830 SURF1Q15526 300 aa13.03□□□□□ -0.32
PDLIM5-220ENST00000514830 ENOX2Q16206 610 aaKnown RBP13.03□□□□□ -0.32
PDLIM5-220ENST00000514830 LRIT3Q3SXY7 679 aa13.03□□□□□ -0.32
PDLIM5-220ENST00000514830 RASIP1Q5U651 963 aa13.03□□□□□ -0.32
PDLIM5-220ENST00000514830 NT5DC4Q86YG4 428 aa13.03□□□□□ -0.32
PDLIM5-220ENST00000514830 TDHQ8IZJ6 230 aa13.03□□□□□ -0.32
PDLIM5-220ENST00000514830 AOPEPQ8N6M6 819 aa13.03□□□□□ -0.32
PDLIM5-220ENST00000514830 TMC2Q8TDI7 906 aa13.03□□□□□ -0.32
PDLIM5-220ENST00000514830 HERVK_113Q902F9 699 aa13.03□□□□□ -0.32
PDLIM5-220ENST00000514830 LRCH3Q96II8 777 aa13.03□□□□□ -0.32
PDLIM5-220ENST00000514830 ACAP3Q96P50 834 aa13.03□□□□□ -0.32
PDLIM5-220ENST00000514830 GDF15Q99988 308 aa13.03□□□□□ -0.32
PDLIM5-220ENST00000514830 LBHD1Q9BQE6 289 aaPredicted RBP13.03□□□□□ -0.32
PDLIM5-220ENST00000514830 FAM213AQ9BRX8 229 aa13.03□□□□□ -0.32
PDLIM5-220ENST00000514830 UBE2OQ9C0C9 1292 aaKnown RBP13.03□□□□□ -0.32
PDLIM5-220ENST00000514830 NXF3Q9H4D5 531 aaKnown RBP13.03□□□□□ -0.32
PDLIM5-220ENST00000514830 PCIF1Q9H4Z3 704 aa13.03□□□□□ -0.32
PDLIM5-220ENST00000514830 TOPORSQ9NS56 1045 aaPredicted RBP13.03□□□□□ -0.32
PDLIM5-220ENST00000514830 STXBP5LQ9Y2K9 1186 aa13.03□□□□□ -0.32
PDLIM5-220ENST00000514830 GIT1Q9Y2X7 761 aa13.03□□□□□ -0.32
PDLIM5-220ENST00000514830 RANBP2P49792 3224 aaKnown RBP13.02□□□□□ -0.32
PDLIM5-220ENST00000514830 LRRC10BA6NIK2 292 aa13.02□□□□□ -0.33
PDLIM5-220ENST00000514830 BECN2A8MW95 431 aa13.02□□□□□ -0.33
PDLIM5-220ENST00000514830 HOXA2O43364 376 aa13.02□□□□□ -0.33
PDLIM5-220ENST00000514830 FGBP02675 491 aa13.02□□□□□ -0.33
PDLIM5-220ENST00000514830 EPB41P11171 864 aaKnown RBP13.02□□□□□ -0.33
PDLIM5-220ENST00000514830 ITGA4P13612 1032 aa13.02□□□□□ -0.33
PDLIM5-220ENST00000514830 SYN1P17600 705 aa13.02□□□□□ -0.33
PDLIM5-220ENST00000514830 CASP4P49662 377 aa13.02□□□□□ -0.33
PDLIM5-220ENST00000514830 ACOT2P49753 483 aa13.02□□□□□ -0.33
PDLIM5-220ENST00000514830 PPP2R3AQ06190 1150 aa13.02□□□□□ -0.33
PDLIM5-220ENST00000514830 PSMD6Q15008 389 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms