RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 ADAM15Q13444 863 aa5.02□□□□□ -1.61
NUP54-212ENST00000513248 CDYL2Q8N8U2 506 aa5.02□□□□□ -1.61
NUP54-212ENST00000513248 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.02□□□□□ -1.61
NUP54-212ENST00000513248 C1orf162Q8NEQ5 155 aaPredicted RBP5.02□□□□□ -1.61
NUP54-212ENST00000513248 TSPEARQ8WU66 669 aa5.02□□□□□ -1.61
NUP54-212ENST00000513248 DYDC2Q96IM9 177 aa5.02□□□□□ -1.61
NUP54-212ENST00000513248 NOL10Q9BSC4 688 aaKnown RBP5.02□□□□□ -1.61
NUP54-212ENST00000513248 PLA2G12BQ9BX93 195 aa5.02□□□□□ -1.61
NUP54-212ENST00000513248 SLC13A1Q9BZW2 595 aa5.02□□□□□ -1.61
NUP54-212ENST00000513248 KCTD10Q9H3F6 313 aa5.02□□□□□ -1.61
NUP54-212ENST00000513248 MSL2Q9HCI7 577 aa5.02□□□□□ -1.61
NUP54-212ENST00000513248 ZFR2Q9UPR6 939 aaKnown RBP5.02□□□□□ -1.61
NUP54-212ENST00000513248 PCDHB6Q9Y5E3 794 aa5.02□□□□□ -1.61
NUP54-212ENST00000513248 CDY2AQ9Y6F7 541 aa5.02□□□□□ -1.61
NUP54-212ENST00000513248 TMEM2Q9UHN6 1383 aa5.02□□□□□ -1.61
NUP54-212ENST00000513248 CPS1P31327 1500 aa5.02□□□□□ -1.61
NUP54-212ENST00000513248 PCDHGA12O60330 932 aa5.01□□□□□ -1.61
NUP54-212ENST00000513248 RAD17O75943 681 aa5.01□□□□□ -1.61
NUP54-212ENST00000513248 PDGFRBP09619 1106 aa5.01□□□□□ -1.61
NUP54-212ENST00000513248 SCAND1P57086 179 aa5.01□□□□□ -1.61
NUP54-212ENST00000513248 UGT8Q16880 541 aa5.01□□□□□ -1.61
NUP54-212ENST00000513248 CPEB4Q17RY0 729 aaKnown RBP eCLIP5.01□□□□□ -1.61
NUP54-212ENST00000513248 MUM1Q2TAK8 710 aa5.01□□□□□ -1.61
NUP54-212ENST00000513248 MIIPQ5JXC2 388 aa5.01□□□□□ -1.61
NUP54-212ENST00000513248 CCDC62Q6P9F0 684 aa5.01□□□□□ -1.61
NUP54-212ENST00000513248 FUKQ8N0W3 1084 aa5.01□□□□□ -1.61
NUP54-212ENST00000513248 OR14C36Q8NHC7 312 aa5.01□□□□□ -1.61
NUP54-212ENST00000513248 GAB3Q8WWW8 586 aa5.01□□□□□ -1.61
NUP54-212ENST00000513248 LPPQ93052 612 aa5.01□□□□□ -1.61
NUP54-212ENST00000513248 GFM2Q969S9 779 aaKnown RBP5.01□□□□□ -1.61
NUP54-212ENST00000513248 FERMT2Q96AC1 680 aa5.01□□□□□ -1.61
NUP54-212ENST00000513248 RAX2Q96IS3 184 aa5.01□□□□□ -1.61
NUP54-212ENST00000513248 WDR92Q96MX6 357 aa5.01□□□□□ -1.61
NUP54-212ENST00000513248 OR14A2Q96R54 314 aa5.01□□□□□ -1.61
NUP54-212ENST00000513248 CCM2LQ9NUG4 571 aaPredicted RBP5.01□□□□□ -1.61
NUP54-212ENST00000513248 KCNG1Q9UIX4 513 aa5.01□□□□□ -1.61
NUP54-212ENST00000513248 PCDHGA9Q9Y5G4 932 aaKnown RBP5.01□□□□□ -1.61
NUP54-212ENST00000513248 PCDHGA8Q9Y5G5 932 aa5.01□□□□□ -1.61
NUP54-212ENST00000513248 PCDHGA7Q9Y5G6 932 aa5.01□□□□□ -1.61
NUP54-212ENST00000513248 PCDHGA6Q9Y5G7 932 aa5.01□□□□□ -1.61
NUP54-212ENST00000513248 PCDHGA3Q9Y5H0 932 aa5.01□□□□□ -1.61
NUP54-212ENST00000513248 PCDHGA2Q9Y5H1 932 aa5.01□□□□□ -1.61
NUP54-212ENST00000513248 SLC30A1Q9Y6M5 507 aa5.01□□□□□ -1.61
NUP54-212ENST00000513248 EFCAB6Q5THR3 1501 aa5.01□□□□□ -1.61
NUP54-212ENST00000513248 LMTK2Q8IWU2 1503 aa5.01□□□□□ -1.61
NUP54-212ENST00000513248 LTBP4Q8N2S1 1624 aa5.01□□□□□ -1.61
NUP54-212ENST00000513248 IQSEC2Q5JU85 1478 aa5□□□□□ -1.61
NUP54-212ENST00000513248 RPRD2Q5VT52 1461 aaKnown RBP5□□□□□ -1.61
NUP54-212ENST00000513248 MAFGO15525 162 aa5□□□□□ -1.61
NUP54-212ENST00000513248 SLC26A4O43511 780 aa5□□□□□ -1.61
NUP54-212ENST00000513248 TMEM127O75204 238 aa5□□□□□ -1.61
NUP54-212ENST00000513248 LPLP06858 475 aa5□□□□□ -1.61
NUP54-212ENST00000513248 GAAP10253 952 aa5□□□□□ -1.61
NUP54-212ENST00000513248 HNRNPLP14866 589 aaKnown RBP eCLIP5□□□□□ -1.61
NUP54-212ENST00000513248 IARSP41252 1262 aaKnown RBP5□□□□□ -1.61
NUP54-212ENST00000513248 ADCY7P51828 1080 aa5□□□□□ -1.61
NUP54-212ENST00000513248 ANAPC15P60006 121 aa5□□□□□ -1.61
NUP54-212ENST00000513248 TGFB2P61812 414 aa5□□□□□ -1.61
NUP54-212ENST00000513248 POLNQ7Z5Q5 900 aa5□□□□□ -1.61
NUP54-212ENST00000513248 UNC5BQ8IZJ1 945 aa5□□□□□ -1.61
NUP54-212ENST00000513248 PIK3C3Q8NEB9 887 aa5□□□□□ -1.61
NUP54-212ENST00000513248 SHCBP1Q8NEM2 672 aa5□□□□□ -1.61
NUP54-212ENST00000513248 GCDHQ92947 438 aaPredicted RBP5□□□□□ -1.61
NUP54-212ENST00000513248 SLC7A6OSQ96CW6 309 aaPredicted RBP5□□□□□ -1.61
NUP54-212ENST00000513248 HIST1H2AHQ96KK5 128 aa5□□□□□ -1.61
NUP54-212ENST00000513248 HIST1H2AJQ99878 128 aa5□□□□□ -1.61
NUP54-212ENST00000513248 DNAI1Q9UI46 699 aa5□□□□□ -1.61
NUP54-212ENST00000513248 ING1Q9UK53 422 aaPredicted RBP5□□□□□ -1.61
NUP54-212ENST00000513248 SPEF1Q9Y4P9 236 aa5□□□□□ -1.61
NUP54-212ENST00000513248 DEPDC5O75140 1603 aa5□□□□□ -1.61
NUP54-212ENST00000513248 POLR1AO95602 1720 aaPredicted RBP5□□□□□ -1.61
NUP54-212ENST00000513248 MED14O60244 1454 aa5□□□□□ -1.61
NUP54-212ENST00000513248 IQGAP1P46940 1657 aa4.99□□□□□ -1.61
NUP54-212ENST00000513248 NOS1P29475 1434 aa4.99□□□□□ -1.61
NUP54-212ENST00000513248 RRBP1Q9P2E9 1410 aaKnown RBP4.99□□□□□ -1.61
NUP54-212ENST00000513248 RIMS2Q9UQ26 1411 aa4.99□□□□□ -1.61
NUP54-212ENST00000513248 PIK3C2BO00750 1634 aa4.99□□□□□ -1.61
NUP54-212ENST00000513248 ST20-MTHFSA0A0A6YYL1 179 aa4.99□□□□□ -1.61
NUP54-212ENST00000513248 MTSS1O43312 755 aa4.99□□□□□ -1.61
NUP54-212ENST00000513248 LY86O95711 162 aa4.99□□□□□ -1.61
NUP54-212ENST00000513248 AGXTP21549 392 aa4.99□□□□□ -1.61
NUP54-212ENST00000513248 COMTP21964 271 aa4.99□□□□□ -1.61
NUP54-212ENST00000513248 HSPA1LP34931 641 aa4.99□□□□□ -1.61
NUP54-212ENST00000513248 RPS19P39019 145 aaKnown RBP4.99□□□□□ -1.61
NUP54-212ENST00000513248 LGALS4P56470 323 aa4.99□□□□□ -1.61
NUP54-212ENST00000513248 ATP2C1P98194 919 aaPredicted RBP4.99□□□□□ -1.61
NUP54-212ENST00000513248 CD69Q07108 199 aa4.99□□□□□ -1.61
NUP54-212ENST00000513248 ITKQ08881 620 aa4.99□□□□□ -1.61
NUP54-212ENST00000513248 FOXE3Q13461 319 aa4.99□□□□□ -1.61
NUP54-212ENST00000513248 PRKD1Q15139 912 aaPredicted RBP4.99□□□□□ -1.61
NUP54-212ENST00000513248 ANO4Q32M45 955 aa4.99□□□□□ -1.61
NUP54-212ENST00000513248 GPR135Q8IZ08 494 aa4.99□□□□□ -1.61
NUP54-212ENST00000513248 AMER2Q8N7J2 671 aa4.99□□□□□ -1.61
NUP54-212ENST00000513248 TGFBRAP1Q8WUH2 860 aa4.99□□□□□ -1.61
NUP54-212ENST00000513248 SSH1Q8WYL5 1049 aa4.99□□□□□ -1.61
NUP54-212ENST00000513248 FUBP3Q96I24 572 aaKnown RBP eCLIP4.99□□□□□ -1.61
NUP54-212ENST00000513248 FAXDC2Q96IV6 333 aa4.99□□□□□ -1.61
NUP54-212ENST00000513248 ENKD1Q9H0I2 346 aa4.99□□□□□ -1.61
NUP54-212ENST00000513248 SLC6A15Q9H2J7 730 aa4.99□□□□□ -1.61
NUP54-212ENST00000513248 NELFAQ9H3P2 528 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms