RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 PAX3P23760 479 aa4.51□□□□□ -1.69
VCAN-209ENST00000513016 CDC27P30260 824 aa4.51□□□□□ -1.69
VCAN-209ENST00000513016 OAZ1P54368 228 aa4.51□□□□□ -1.69
VCAN-209ENST00000513016 EHHADHQ08426 723 aa4.51□□□□□ -1.69
VCAN-209ENST00000513016 NFE2Q16621 373 aaPredicted RBP4.51□□□□□ -1.69
VCAN-209ENST00000513016 PHKG1Q16816 387 aa4.51□□□□□ -1.69
VCAN-209ENST00000513016 IL31Q6EBC2 164 aa4.51□□□□□ -1.69
VCAN-209ENST00000513016 NECAB2Q7Z6G3 386 aa4.51□□□□□ -1.69
VCAN-209ENST00000513016 SGMS1Q86VZ5 419 aa4.51□□□□□ -1.69
VCAN-209ENST00000513016 CEP72Q9P209 647 aa4.51□□□□□ -1.69
VCAN-209ENST00000513016 IQGAP3Q86VI3 1631 aa4.51□□□□□ -1.69
VCAN-209ENST00000513016 DIP2AQ14689 1571 aa4.51□□□□□ -1.69
VCAN-209ENST00000513016 NRKQ7Z2Y5 1582 aa4.51□□□□□ -1.69
VCAN-209ENST00000513016 POTECB2RU33 542 aa4.51□□□□□ -1.69
VCAN-209ENST00000513016 RRP9O43818 475 aaKnown RBP4.51□□□□□ -1.69
VCAN-209ENST00000513016 CAND2O75155 1236 aa4.51□□□□□ -1.69
VCAN-209ENST00000513016 ZMYND10O75800 440 aa4.51□□□□□ -1.69
VCAN-209ENST00000513016 SULT1E1P49888 294 aa4.51□□□□□ -1.69
VCAN-209ENST00000513016 ARL4CP56559 192 aa4.51□□□□□ -1.69
VCAN-209ENST00000513016 CAV1Q03135 178 aa4.51□□□□□ -1.69
VCAN-209ENST00000513016 BRD3Q15059 726 aa4.51□□□□□ -1.69
VCAN-209ENST00000513016 TAB3Q8N5C8 712 aaPredicted RBP4.51□□□□□ -1.69
VCAN-209ENST00000513016 INTS2Q9H0H0 1204 aaKnown RBP4.51□□□□□ -1.69
VCAN-209ENST00000513016 Q9H521 79 aa4.51□□□□□ -1.69
VCAN-209ENST00000513016 LY9Q9HBG7 655 aa4.51□□□□□ -1.69
VCAN-209ENST00000513016 PARVAQ9NVD7 372 aa4.51□□□□□ -1.69
VCAN-209ENST00000513016 EPS15L1Q9UBC2 864 aa4.51□□□□□ -1.69
VCAN-209ENST00000513016 UXTQ9UBK9 157 aaPredicted RBP4.51□□□□□ -1.69
VCAN-209ENST00000513016 LAMC1P11047 1609 aa4.51□□□□□ -1.69
VCAN-209ENST00000513016 NEDD4P46934 1319 aa4.51□□□□□ -1.69
VCAN-209ENST00000513016 CEP170BQ9Y4F5 1589 aaPredicted RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 RSPH10B2B2RC85 870 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 GNGT2O14610 69 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 GNRH1P01148 92 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 RSPH10BP0C881 870 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 TGFB3P10600 412 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 KLRC2P26717 231 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 CASP2P42575 452 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 HERVK_113P62684 666 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 FAM102AQ5T9C2 384 aaPredicted RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 E4F1Q66K89 784 aaPredicted RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 PHLDB3Q6NSJ2 640 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 HERC6Q8IVU3 1022 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 TRMT2AQ8IZ69 625 aaKnown RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 KRT35Q92764 455 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 EGFL8Q99944 293 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 NT5C1AQ9BXI3 368 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 GLIS2Q9BZE0 524 aaPredicted RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 KIAA1257Q9ULG3 409 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 PCDHGB4Q9UN71 923 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 SNAP23O00161 211 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 NPTXRO95502 500 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 AXLP30530 894 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 TCF7P36402 384 aaPredicted RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 BCAR1P56945 870 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 NLRP11P59045 1033 aaKnown RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 ZNF177Q13360 481 aaPredicted RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 ALKBH5Q6P6C2 394 aaKnown RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 INTS5Q6P9B9 1019 aaKnown RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 LMNTD2Q8IXW0 634 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 GUF1Q8N442 669 aaKnown RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 SRBD1Q8N5C6 995 aaKnown RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 SLC7A14Q8TBB6 771 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 PYROXD1Q8WU10 500 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 XPO6Q96QU8 1125 aaKnown RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 PRG3Q9Y2Y8 225 aaPredicted RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 PODXLO00592 558 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 PDXKO00764 312 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 NDUFAB1O14561 156 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 SLC16A3O15427 465 aaKnown RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 KRT37O76014 449 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 LCP1P13796 627 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 POLD3Q15054 466 aaPredicted RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 TSNAXIP1Q2TAA8 658 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 BBS9Q3SYG4 887 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 RABGAP1LQ5R372 815 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 CAPN12Q6ZSI9 719 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 FRMD5Q7Z6J6 570 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 ZKSCAN4Q969J2 545 aaPredicted RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 ZNF668Q96K58 619 aaPredicted RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 CABS1Q96KC9 395 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 PRMT6Q96LA8 375 aaPredicted RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 KDM4CQ9H3R0 1056 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 DHX35Q9H5Z1 703 aaKnown RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 SELENONQ9NZV5 590 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 TUBE1Q9UJT0 475 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 ANAPC7Q9UJX3 599 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 PPP1R9AQ9ULJ8 1098 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 ARHGAP10A1A4S6 786 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 SLC15A5A6NIM6 579 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 MTSS1O43312 755 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 FAM200BP0CF97 657 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 IRF1P10914 325 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 SSTR3P32745 418 aaPredicted RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 GEMIN4P57678 1058 aaKnown RBP4.5□□□□□ -1.69
VCAN-209ENST00000513016 NSUN2Q08J23 767 aaKnown RBP eCLIP4.5□□□□□ -1.69
VCAN-209ENST00000513016 SLC12A1Q13621 1099 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 ADCK5Q3MIX3 580 aa4.5□□□□□ -1.69
VCAN-209ENST00000513016 ATG16L1Q676U5 607 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms