RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 SUGCTQ9HAC7 445 aa11.12□□□□□ -0.63
HDAC3-214ENST00000495485 NLRC4Q9NPP4 1024 aa11.12□□□□□ -0.63
HDAC3-214ENST00000495485 GTF2IRD1Q9UHL9 959 aa11.12□□□□□ -0.63
HDAC3-214ENST00000495485 DNAI1Q9UI46 699 aa11.12□□□□□ -0.63
HDAC3-214ENST00000495485 IGKV6-21A0A0C4DH24 114 aa11.11□□□□□ -0.63
HDAC3-214ENST00000495485 RNF225M0QZC1 329 aaPredicted RBP11.11□□□□□ -0.63
HDAC3-214ENST00000495485 PITPNM1O00562 1244 aa11.11□□□□□ -0.63
HDAC3-214ENST00000495485 EXTL3O43909 919 aa11.11□□□□□ -0.63
HDAC3-214ENST00000495485 CAPN15O75808 1086 aa11.11□□□□□ -0.63
HDAC3-214ENST00000495485 CD4P01730 458 aa11.11□□□□□ -0.63
HDAC3-214ENST00000495485 GLRA2P23416 452 aa11.11□□□□□ -0.63
HDAC3-214ENST00000495485 MARK3P27448 753 aa11.11□□□□□ -0.63
HDAC3-214ENST00000495485 MXI1P50539 228 aa11.11□□□□□ -0.63
HDAC3-214ENST00000495485 AP3M2P53677 418 aa11.11□□□□□ -0.63
HDAC3-214ENST00000495485 BFSP2Q13515 415 aa11.11□□□□□ -0.63
HDAC3-214ENST00000495485 KYAT1Q16773 422 aa11.11□□□□□ -0.63
HDAC3-214ENST00000495485 LRRC26Q2I0M4 334 aa11.11□□□□□ -0.63
HDAC3-214ENST00000495485 TMEM63BQ5T3F8 832 aa11.11□□□□□ -0.63
HDAC3-214ENST00000495485 KRT39Q6A163 491 aa11.11□□□□□ -0.63
HDAC3-214ENST00000495485 SMYD5Q6GMV2 418 aa11.11□□□□□ -0.63
HDAC3-214ENST00000495485 TAF2Q6P1X5 1199 aa11.11□□□□□ -0.63
HDAC3-214ENST00000495485 TRIM65Q6PJ69 517 aa11.11□□□□□ -0.63
HDAC3-214ENST00000495485 SYT10Q6XYQ8 523 aa11.11□□□□□ -0.63
HDAC3-214ENST00000495485 APBB1IPQ7Z5R6 666 aaPredicted RBP11.11□□□□□ -0.63
HDAC3-214ENST00000495485 RPAINQ86UA6 219 aa11.11□□□□□ -0.63
HDAC3-214ENST00000495485 FAM126BQ8IXS8 530 aa11.11□□□□□ -0.63
HDAC3-214ENST00000495485 PRPF31Q8WWY3 499 aaKnown RBP11.11□□□□□ -0.63
HDAC3-214ENST00000495485 BSNDQ8WZ55 320 aa11.11□□□□□ -0.63
HDAC3-214ENST00000495485 JAKMIP2Q96AA8 810 aa11.11□□□□□ -0.63
HDAC3-214ENST00000495485 MFSD14AQ96MC6 490 aa11.11□□□□□ -0.63
HDAC3-214ENST00000495485 FBXL18Q96ME1 805 aa11.11□□□□□ -0.63
HDAC3-214ENST00000495485 CEP89Q96ST8 783 aa11.11□□□□□ -0.63
HDAC3-214ENST00000495485 CBWD1Q9BRT8 395 aa11.11□□□□□ -0.63
HDAC3-214ENST00000495485 DESI2Q9BSY9 194 aa11.11□□□□□ -0.63
HDAC3-214ENST00000495485 STK33Q9BYT3 514 aa11.11□□□□□ -0.63
HDAC3-214ENST00000495485 GANQ9H2C0 597 aa11.11□□□□□ -0.63
HDAC3-214ENST00000495485 TMEM8AQ9HCN3 771 aa11.11□□□□□ -0.63
HDAC3-214ENST00000495485 LZTFL1Q9NQ48 299 aa11.11□□□□□ -0.63
HDAC3-214ENST00000495485 SUCLA2Q9P2R7 463 aaPredicted RBP11.11□□□□□ -0.63
HDAC3-214ENST00000495485 AGO2Q9UKV8 859 aaKnown RBP11.11□□□□□ -0.63
HDAC3-214ENST00000495485 NOD1Q9Y239 953 aa11.11□□□□□ -0.63
HDAC3-214ENST00000495485 STYXL1Q9Y6J8 313 aa11.11□□□□□ -0.63
HDAC3-214ENST00000495485 C17orf102A2RUQ5 167 aa11.1□□□□□ -0.63
HDAC3-214ENST00000495485 KIAA0355O15063 1070 aa11.1□□□□□ -0.63
HDAC3-214ENST00000495485 ZC3H11AO75152 810 aaKnown RBP eCLIP11.1□□□□□ -0.63
HDAC3-214ENST00000495485 NOL4O94818 638 aa11.1□□□□□ -0.63
HDAC3-214ENST00000495485 LCA5LO95447 670 aa11.1□□□□□ -0.63
HDAC3-214ENST00000495485 SLC9A1P19634 815 aa11.1□□□□□ -0.63
HDAC3-214ENST00000495485 EIF4A3P38919 411 aaKnown RBP11.1□□□□□ -0.63
HDAC3-214ENST00000495485 PHKA2P46019 1235 aa11.1□□□□□ -0.63
HDAC3-214ENST00000495485 KIF11P52732 1056 aa11.1□□□□□ -0.63
HDAC3-214ENST00000495485 VAV2P52735 878 aa11.1□□□□□ -0.63
HDAC3-214ENST00000495485 MFAP3P55082 362 aa11.1□□□□□ -0.63
HDAC3-214ENST00000495485 TLE2Q04725 743 aa11.1□□□□□ -0.63
HDAC3-214ENST00000495485 CYP24A1Q07973 514 aa11.1□□□□□ -0.63
HDAC3-214ENST00000495485 LAMTOR4Q0VGL1 99 aa11.1□□□□□ -0.63
HDAC3-214ENST00000495485 PTK7Q13308 1070 aa11.1□□□□□ -0.63
HDAC3-214ENST00000495485 MTF1Q14872 753 aa11.1□□□□□ -0.63
HDAC3-214ENST00000495485 IFI16Q16666 785 aaKnown RBP11.1□□□□□ -0.63
HDAC3-214ENST00000495485 TMEM132AQ24JP5 1023 aa11.1□□□□□ -0.63
HDAC3-214ENST00000495485 WDR44Q5JSH3 913 aa11.1□□□□□ -0.63
HDAC3-214ENST00000495485 CCDC122Q5T0U0 273 aa11.1□□□□□ -0.63
HDAC3-214ENST00000495485 EFCAB12Q6NXP0 572 aa11.1□□□□□ -0.63
HDAC3-214ENST00000495485 ENOSF1Q7L5Y1 443 aa11.1□□□□□ -0.63
HDAC3-214ENST00000495485 RSPH3Q86UC2 560 aa11.1□□□□□ -0.63
HDAC3-214ENST00000495485 ASAP3Q8TDY4 903 aa11.1□□□□□ -0.63
HDAC3-214ENST00000495485 PARD3BQ8TEW8 1205 aa11.1□□□□□ -0.63
HDAC3-214ENST00000495485 ALS2CR12Q96Q35 445 aa11.1□□□□□ -0.63
HDAC3-214ENST00000495485 MAP7D2Q96T17 732 aa11.1□□□□□ -0.63
HDAC3-214ENST00000495485 NFKBIZQ9BYH8 718 aa11.1□□□□□ -0.63
HDAC3-214ENST00000495485 IFIH1Q9BYX4 1025 aaKnown RBP11.1□□□□□ -0.63
HDAC3-214ENST00000495485 INTS2Q9H0H0 1204 aaKnown RBP11.1□□□□□ -0.63
HDAC3-214ENST00000495485 PRMT7Q9NVM4 692 aaPredicted RBP11.1□□□□□ -0.63
HDAC3-214ENST00000495485 APEX2Q9UBZ4 518 aa11.1□□□□□ -0.63
HDAC3-214ENST00000495485 ATP11BQ9Y2G3 1177 aa11.1□□□□□ -0.63
HDAC3-214ENST00000495485 USP20Q9Y2K6 914 aa11.1□□□□□ -0.63
HDAC3-214ENST00000495485 TRIOBPQ9H2D6 2365 aa11.1□□□□□ -0.63
HDAC3-214ENST00000495485 ATP8B3O60423 1300 aa11.09□□□□□ -0.63
HDAC3-214ENST00000495485 SIP14410 1827 aa11.09□□□□□ -0.63
HDAC3-214ENST00000495485 UQCRHLA0A096LP55 91 aa11.09□□□□□ -0.63
HDAC3-214ENST00000495485 CTAGE9A4FU28 777 aa11.09□□□□□ -0.63
HDAC3-214ENST00000495485 ANKRD63C9JTQ0 380 aa11.09□□□□□ -0.63
HDAC3-214ENST00000495485 DYNC1I1O14576 645 aa11.09□□□□□ -0.63
HDAC3-214ENST00000495485 CLDN3O15551 220 aa11.09□□□□□ -0.63
HDAC3-214ENST00000495485 TACC1O75410 805 aa11.09□□□□□ -0.63
HDAC3-214ENST00000495485 TOM1L1O75674 476 aa11.09□□□□□ -0.63
HDAC3-214ENST00000495485 UQCRHP07919 91 aa11.09□□□□□ -0.63
HDAC3-214ENST00000495485 ZNF286BP0CG31 522 aa11.09□□□□□ -0.63
HDAC3-214ENST00000495485 SMIM10L2AP0DMW4 78 aa11.09□□□□□ -0.63
HDAC3-214ENST00000495485 SMIM10L2BP0DMW5 78 aa11.09□□□□□ -0.63
HDAC3-214ENST00000495485 RFC2P35250 354 aa11.09□□□□□ -0.63
HDAC3-214ENST00000495485 PRKCIP41743 596 aa11.09□□□□□ -0.63
HDAC3-214ENST00000495485 MAGEA1P43355 309 aa11.09□□□□□ -0.63
HDAC3-214ENST00000495485 ATN1P54259 1190 aaPredicted RBP11.09□□□□□ -0.63
HDAC3-214ENST00000495485 POU5F1Q01860 360 aaKnown RBP11.09□□□□□ -0.63
HDAC3-214ENST00000495485 NCBP1Q09161 790 aaKnown RBP11.09□□□□□ -0.63
HDAC3-214ENST00000495485 PPFIA1Q13136 1202 aa11.09□□□□□ -0.63
HDAC3-214ENST00000495485 CAPSQ13938 189 aa11.09□□□□□ -0.63
HDAC3-214ENST00000495485 TRIM60Q495X7 471 aa11.09□□□□□ -0.63
HDAC3-214ENST00000495485 FAM47CQ5HY64 1035 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms