RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 RNF169Q8NCN4 708 aa21.09■□□□□ 0.97
USP39-218ENST00000493829 LINC01599Q8WXQ3 324 aa21.09■□□□□ 0.97
USP39-218ENST00000493829 FAM84AQ96KN4 292 aa21.09■□□□□ 0.97
USP39-218ENST00000493829 MMRN2Q9H8L6 949 aa21.09■□□□□ 0.97
USP39-218ENST00000493829 CHST12Q9NRB3 414 aa21.09■□□□□ 0.97
USP39-218ENST00000493829 SNTG2Q9NY99 539 aa21.09■□□□□ 0.97
USP39-218ENST00000493829 IPPQ9Y573 584 aa21.09■□□□□ 0.97
USP39-218ENST00000493829 ZNF233A6NK53 670 aa21.08■□□□□ 0.96
USP39-218ENST00000493829 PES1O00541 588 aaKnown RBP21.08■□□□□ 0.96
USP39-218ENST00000493829 LDHAP00338 332 aaKnown RBP21.08■□□□□ 0.96
USP39-218ENST00000493829 SERPINC1P01008 464 aa21.08■□□□□ 0.96
USP39-218ENST00000493829 AKAP5P24588 427 aa21.08■□□□□ 0.96
USP39-218ENST00000493829 EEF1GP26641 437 aaKnown RBP21.08■□□□□ 0.96
USP39-218ENST00000493829 WNT7BP56706 349 aa21.08■□□□□ 0.96
USP39-218ENST00000493829 CYP24A1Q07973 514 aa21.08■□□□□ 0.96
USP39-218ENST00000493829 DSC3Q14574 896 aa21.08■□□□□ 0.96
USP39-218ENST00000493829 ANKRD20A12PQ8NF67 263 aa21.08■□□□□ 0.96
USP39-218ENST00000493829 TMEM174Q8WUU8 243 aa21.08■□□□□ 0.96
USP39-218ENST00000493829 DPF3Q92784 378 aa21.08■□□□□ 0.96
USP39-218ENST00000493829 FBXL18Q96ME1 805 aa21.08■□□□□ 0.96
USP39-218ENST00000493829 MKNK1Q9BUB5 465 aa21.08■□□□□ 0.96
USP39-218ENST00000493829 VPS16Q9H269 839 aa21.08■□□□□ 0.96
USP39-218ENST00000493829 FAM105AQ9NUU6 356 aa21.08■□□□□ 0.96
USP39-218ENST00000493829 CPSF3Q9UKF6 684 aaKnown RBP21.08■□□□□ 0.96
USP39-218ENST00000493829 ZMYND8Q9ULU4 1186 aaPredicted RBP21.08■□□□□ 0.96
USP39-218ENST00000493829 PCDHB2Q9Y5E7 798 aa21.08■□□□□ 0.96
USP39-218ENST00000493829 KRT13P13646 458 aa21.07■□□□□ 0.96
USP39-218ENST00000493829 DLG4P78352 724 aa21.07■□□□□ 0.96
USP39-218ENST00000493829 FANCCQ00597 558 aa21.07■□□□□ 0.96
USP39-218ENST00000493829 SPAG1Q07617 926 aa21.07■□□□□ 0.96
USP39-218ENST00000493829 ENOX2Q16206 610 aaKnown RBP21.07■□□□□ 0.96
USP39-218ENST00000493829 SMG8Q8ND04 991 aaKnown RBP21.07■□□□□ 0.96
USP39-218ENST00000493829 PLEKHO2Q8TD55 490 aa21.07■□□□□ 0.96
USP39-218ENST00000493829 LPPQ93052 612 aa21.07■□□□□ 0.96
USP39-218ENST00000493829 TUBGCP2Q9BSJ2 902 aa21.07■□□□□ 0.96
USP39-218ENST00000493829 CCDC94Q9BW85 323 aaPredicted RBP21.07■□□□□ 0.96
USP39-218ENST00000493829 KIAA1586Q9HCI6 787 aa21.07■□□□□ 0.96
USP39-218ENST00000493829 TET1Q8NFU7 2136 aa21.07■□□□□ 0.96
USP39-218ENST00000493829 LTBP2Q14767 1821 aa21.06■□□□□ 0.96
USP39-218ENST00000493829 AP5Z1O43299 807 aa21.06■□□□□ 0.96
USP39-218ENST00000493829 CXCL10P02778 98 aa21.06■□□□□ 0.96
USP39-218ENST00000493829 DLATP10515 647 aaKnown RBP21.06■□□□□ 0.96
USP39-218ENST00000493829 GRM5P41594 1212 aa21.06■□□□□ 0.96
USP39-218ENST00000493829 BFSP1Q12934 665 aa21.06■□□□□ 0.96
USP39-218ENST00000493829 LMBRD2Q68DH5 695 aaPredicted RBP21.06■□□□□ 0.96
USP39-218ENST00000493829 FRMD5Q7Z6J6 570 aa21.06■□□□□ 0.96
USP39-218ENST00000493829 TMEM199Q8N511 208 aa21.06■□□□□ 0.96
USP39-218ENST00000493829 BORCS6Q96GS4 357 aa21.06■□□□□ 0.96
USP39-218ENST00000493829 RNF39Q9H2S5 420 aa21.06■□□□□ 0.96
USP39-218ENST00000493829 RPF1Q9H9Y2 349 aaKnown RBP21.06■□□□□ 0.96
USP39-218ENST00000493829 PDE11AQ9HCR9 933 aa21.06■□□□□ 0.96
USP39-218ENST00000493829 TOPORSQ9NS56 1045 aaPredicted RBP21.06■□□□□ 0.96
USP39-218ENST00000493829 PARP2Q9UGN5 583 aa21.06■□□□□ 0.96
USP39-218ENST00000493829 MEIS3P2A8K0S8 358 aa21.05■□□□□ 0.96
USP39-218ENST00000493829 RECQL4O94761 1208 aa21.05■□□□□ 0.96
USP39-218ENST00000493829 PARNO95453 639 aaKnown RBP21.05■□□□□ 0.96
USP39-218ENST00000493829 CLTAP09496 248 aa21.05■□□□□ 0.96
USP39-218ENST00000493829 ACRP10323 421 aa21.05■□□□□ 0.96
USP39-218ENST00000493829 VAMP7P51809 220 aa21.05■□□□□ 0.96
USP39-218ENST00000493829 MFSD5Q6N075 450 aa21.05■□□□□ 0.96
USP39-218ENST00000493829 INTS8Q75QN2 995 aaKnown RBP21.05■□□□□ 0.96
USP39-218ENST00000493829 RTN4RL1Q86UN2 441 aaPredicted RBP21.05■□□□□ 0.96
USP39-218ENST00000493829 BRSK2Q8IWQ3 736 aa21.05■□□□□ 0.96
USP39-218ENST00000493829 TRIM59Q8IWR1 403 aa21.05■□□□□ 0.96
USP39-218ENST00000493829 BADQ92934 168 aa21.05■□□□□ 0.96
USP39-218ENST00000493829 ACAP3Q96P50 834 aa21.05■□□□□ 0.96
USP39-218ENST00000493829 POP1Q99575 1024 aaKnown RBP21.05■□□□□ 0.96
USP39-218ENST00000493829 METTL14Q9HCE5 456 aaKnown RBP21.05■□□□□ 0.96
USP39-218ENST00000493829 RNF19AQ9NV58 838 aa21.05■□□□□ 0.96
USP39-218ENST00000493829 KLK14Q9P0G3 267 aa21.05■□□□□ 0.96
USP39-218ENST00000493829 IFNKQ9P0W0 207 aa21.05■□□□□ 0.96
USP39-218ENST00000493829 LIMA1Q9UHB6 759 aaKnown RBP21.05■□□□□ 0.96
USP39-218ENST00000493829 UTP18Q9Y5J1 556 aaKnown RBP eCLIP21.05■□□□□ 0.96
USP39-218ENST00000493829 MEFVO15553 781 aaPredicted RBP21.05■□□□□ 0.96
USP39-218ENST00000493829 RFC2P35250 354 aa21.05■□□□□ 0.96
USP39-218ENST00000493829 COPB1P53618 953 aaKnown RBP21.05■□□□□ 0.96
USP39-218ENST00000493829 MARSP56192 900 aaKnown RBP21.05■□□□□ 0.96
USP39-218ENST00000493829 PTPN21Q16825 1174 aa21.05■□□□□ 0.96
USP39-218ENST00000493829 APBB2Q92870 758 aa21.05■□□□□ 0.96
USP39-218ENST00000493829 VWCEQ96DN2 955 aa21.05■□□□□ 0.96
USP39-218ENST00000493829 MFSD14AQ96MC6 490 aa21.05■□□□□ 0.96
USP39-218ENST00000493829 FTHL17Q9BXU8 183 aa21.05■□□□□ 0.96
USP39-218ENST00000493829 CXCL16Q9H2A7 254 aa21.05■□□□□ 0.96
USP39-218ENST00000493829 ANK1P16157 1881 aa21.04■□□□□ 0.96
USP39-218ENST00000493829 MAN2A1Q16706 1144 aa21.04■□□□□ 0.96
USP39-218ENST00000493829 UVSSAQ2YD98 709 aa21.04■□□□□ 0.96
USP39-218ENST00000493829 APTXQ7Z2E3 356 aaKnown RBP21.04■□□□□ 0.96
USP39-218ENST00000493829 RGS18Q9NS28 235 aa21.04■□□□□ 0.96
USP39-218ENST00000493829 PTPRJQ12913 1337 aa21.04■□□□□ 0.96
USP39-218ENST00000493829 RALGAPA2Q2PPJ7 1873 aa21.04■□□□□ 0.96
USP39-218ENST00000493829 LRRIQ3A6PVS8 624 aaPredicted RBP21.03■□□□□ 0.96
USP39-218ENST00000493829 MAPK13O15264 365 aa21.03■□□□□ 0.96
USP39-218ENST00000493829 TPM2P07951 284 aa21.03■□□□□ 0.96
USP39-218ENST00000493829 ITGA4P13612 1032 aa21.03■□□□□ 0.96
USP39-218ENST00000493829 RAB27AP51159 221 aa21.03■□□□□ 0.96
USP39-218ENST00000493829 YARSP54577 528 aaKnown RBP21.03■□□□□ 0.96
USP39-218ENST00000493829 PPP2R3AQ06190 1150 aa21.03■□□□□ 0.96
USP39-218ENST00000493829 HSP90AA2PQ14568 343 aaPredicted RBP21.03■□□□□ 0.96
USP39-218ENST00000493829 PSMD6Q15008 389 aa21.03■□□□□ 0.96
USP39-218ENST00000493829 MIIPQ5JXC2 388 aa21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms