RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 CMIPQ8IY22 773 aa2.9□□□□□ -1.95
HMGB1-208ENST00000490788 MSL3Q8N5Y2 521 aaKnown RBP2.9□□□□□ -1.95
HMGB1-208ENST00000490788 GPR156Q8NFN8 814 aa2.9□□□□□ -1.95
HMGB1-208ENST00000490788 MDGA1Q8NFP4 955 aa2.9□□□□□ -1.95
HMGB1-208ENST00000490788 RIN2Q8WYP3 895 aaPredicted RBP2.9□□□□□ -1.95
HMGB1-208ENST00000490788 MTMR8Q96EF0 704 aa2.9□□□□□ -1.95
HMGB1-208ENST00000490788 MENTQ9BUN1 341 aa2.9□□□□□ -1.95
HMGB1-208ENST00000490788 SPON1Q9HCB6 807 aa2.9□□□□□ -1.95
HMGB1-208ENST00000490788 VTA1Q9NP79 307 aa2.9□□□□□ -1.95
HMGB1-208ENST00000490788 RBM12Q9NTZ6 932 aaKnown RBP2.9□□□□□ -1.95
HMGB1-208ENST00000490788 CCM2LQ9NUG4 571 aaPredicted RBP2.9□□□□□ -1.95
HMGB1-208ENST00000490788 GPRC5DQ9NZD1 345 aa2.9□□□□□ -1.95
HMGB1-208ENST00000490788 POGKQ9P215 609 aa2.9□□□□□ -1.95
HMGB1-208ENST00000490788 SRRDQ9UH36 339 aa2.9□□□□□ -1.95
HMGB1-208ENST00000490788 EIF2B4Q9UI10 523 aaKnown RBP2.9□□□□□ -1.95
HMGB1-208ENST00000490788 COL4A3BPQ9Y5P4 624 aa2.9□□□□□ -1.95
HMGB1-208ENST00000490788 LRP5O75197 1615 aa2.9□□□□□ -1.95
HMGB1-208ENST00000490788 PHLDB1Q86UU1 1377 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 B5MCH6 92 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 XPOTO43592 962 aaKnown RBP2.89□□□□□ -1.95
HMGB1-208ENST00000490788 FZD7O75084 574 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 PPFIA4O75335 1185 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 ENDOD1O94919 500 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 FSHBP01225 129 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 MYBL2P10244 700 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 C6P13671 934 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 GSPT1P15170 499 aaKnown RBP2.89□□□□□ -1.95
HMGB1-208ENST00000490788 NCLP19338 710 aaKnown RBP2.89□□□□□ -1.95
HMGB1-208ENST00000490788 TACR2P21452 398 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 MGAT1P26572 445 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 SLC16A1P53985 500 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 ANAPC15P60006 121 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 MXRA7P84157 204 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 MALLQ13021 153 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 PRDM2Q13029 1718 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 MRPL49Q13405 166 aaKnown RBP2.89□□□□□ -1.95
HMGB1-208ENST00000490788 FOXE3Q13461 319 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 CDSNQ15517 529 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 NCOA1Q15788 1441 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 ADRM1Q16186 407 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 ATP2B3Q16720 1220 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 LSM12Q3MHD2 195 aaKnown RBP2.89□□□□□ -1.95
HMGB1-208ENST00000490788 DCAF17Q5H9S7 520 aaPredicted RBP2.89□□□□□ -1.95
HMGB1-208ENST00000490788 EFCAB12Q6NXP0 572 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 ABHD15Q6UXT9 468 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 PNMA8AQ86V59 439 aaPredicted RBP2.89□□□□□ -1.95
HMGB1-208ENST00000490788 TMPRSS6Q8IU80 811 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 SLC41A1Q8IVJ1 513 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 SYNE4Q8N205 404 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 PPM1NQ8N819 430 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 MDM1Q8TC05 714 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 SSH1Q8WYL5 1049 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 SORCS2Q96PQ0 1159 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 ORAI2Q96SN7 254 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 MNTQ99583 582 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 PDCD2LQ9BRP1 358 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 SENP6Q9GZR1 1112 aaPredicted RBP2.89□□□□□ -1.95
HMGB1-208ENST00000490788 PRDM12Q9H4Q4 367 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 TMEM140Q9NV12 185 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 MOCS1Q9NZB8 636 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 PCDHGA2Q9Y5H1 932 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 GPR45Q9Y5Y3 372 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 FANCAO15360 1455 aa2.89□□□□□ -1.95
HMGB1-208ENST00000490788 CUL7Q14999 1698 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 LRRC7Q96NW7 1537 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 TTC37Q6PGP7 1564 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 PTPRGP23470 1445 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 FER1L4A9Z1Z3 1794 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 SHTN1A0MZ66 631 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 KRTAP23-1A1A580 65 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 KLHL33A6NCF5 533 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 FAM171A2A8MVW0 826 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 TEX33O43247 280 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 TMEM127O75204 238 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 STC2O76061 302 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 SCAF4O95104 1147 aaKnown RBP2.88□□□□□ -1.95
HMGB1-208ENST00000490788 ZNF202O95125 648 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 MT-CO1P00395 513 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 SPATA31D3P0C874 917 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 RAP2AP10114 183 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 IL2RBP14784 551 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 MCM7P33993 719 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 PTGS2P35354 604 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 GPR3P46089 330 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 SCNN1GP51170 649 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 ERVK-21P61565 698 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 ABHD18Q0P651 414 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 TUBA3CQ13748 450 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 PTPROQ16827 1216 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 MST1LQ2TV78 715 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 RRP12Q5JTH9 1297 aaKnown RBP2.88□□□□□ -1.95
HMGB1-208ENST00000490788 METTL24Q5JXM2 366 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 SYDE2Q5VT97 1194 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 SPTY2D1Q68D10 685 aaPredicted RBP2.88□□□□□ -1.95
HMGB1-208ENST00000490788 TUBA3EQ6PEY2 450 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 Q6ZRM9 215 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 SPATA31D4Q6ZUB0 917 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 MIGA2Q7L4E1 593 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 DOK3Q7L591 496 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 XYLT1Q86Y38 959 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms