RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 NPY5RQ15761 445 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 USP41Q3LFD5 358 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 SPECC1Q5M775 1068 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 GALNT17Q6IS24 598 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 FUT10Q6P4F1 479 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 NOTUMQ6P988 496 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 BLOC1S2Q6QNY1 142 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 RSPO2Q6UXX9 243 aaPredicted RBP9.14□□□□□ -0.95
USP39-216ENST00000490193 GET4Q7L5D6 327 aaPredicted RBP9.14□□□□□ -0.95
USP39-216ENST00000490193 FERMT3Q86UX7 667 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 C4orf19Q8IY42 314 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 GPR161Q8N6U8 529 aaKnown RBP9.14□□□□□ -0.95
USP39-216ENST00000490193 GSTCDQ8NEC7 633 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 CEP170P1Q96L14 293 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 FAM20AQ96MK3 541 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 ZFP42Q96MM3 310 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 GAD1Q99259 594 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 COLEC11Q9BWP8 271 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 EIF2AQ9BY44 585 aaKnown RBP9.14□□□□□ -0.95
USP39-216ENST00000490193 GPR62Q9BZJ7 368 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 FOXQ1Q9C009 403 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 CSRNP2Q9H175 543 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 PIDD1Q9HB75 910 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 KCNMB3Q9NPA1 279 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 MIOSQ9NXC5 875 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 WRAP73Q9P2S5 460 aaPredicted RBP9.14□□□□□ -0.95
USP39-216ENST00000490193 FBXW11Q9UKB1 542 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 GIT1Q9Y2X7 761 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 NOTCH4Q99466 2003 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 COL4A3Q01955 1670 aa9.13□□□□□ -0.95
USP39-216ENST00000490193 VWA8A3KMH1 1905 aa9.13□□□□□ -0.95
USP39-216ENST00000490193 KANSL1LA0AUZ9 987 aa9.13□□□□□ -0.95
USP39-216ENST00000490193 SLC37A4O43826 429 aa9.13□□□□□ -0.95
USP39-216ENST00000490193 POU2F2P09086 479 aa9.13□□□□□ -0.95
USP39-216ENST00000490193 HNRNPA1P09651 372 aaKnown RBP eCLIP9.13□□□□□ -0.95
USP39-216ENST00000490193 SPATA31D3P0C874 917 aa9.13□□□□□ -0.95
USP39-216ENST00000490193 SDHBP21912 280 aa9.13□□□□□ -0.95
USP39-216ENST00000490193 RPS6KB1P23443 525 aa9.13□□□□□ -0.95
USP39-216ENST00000490193 FSHRP23945 695 aa9.13□□□□□ -0.95
USP39-216ENST00000490193 PDIA3P30101 505 aaKnown RBP9.13□□□□□ -0.95
USP39-216ENST00000490193 GPC5P78333 572 aa9.13□□□□□ -0.95
USP39-216ENST00000490193 GRIK3Q13003 919 aa9.13□□□□□ -0.95
USP39-216ENST00000490193 MXD4Q14582 209 aaPredicted RBP9.13□□□□□ -0.95
USP39-216ENST00000490193 EMC2Q15006 297 aa9.13□□□□□ -0.95
USP39-216ENST00000490193 AMHR2Q16671 573 aa9.13□□□□□ -0.95
USP39-216ENST00000490193 PPP4R3AQ6IN85 833 aa9.13□□□□□ -0.95
USP39-216ENST00000490193 SPATA31D4Q6ZUB0 917 aa9.13□□□□□ -0.95
USP39-216ENST00000490193 MTSS1LQ765P7 747 aa9.13□□□□□ -0.95
USP39-216ENST00000490193 PALB2Q86YC2 1186 aa9.13□□□□□ -0.95
USP39-216ENST00000490193 HACE1Q8IYU2 909 aa9.13□□□□□ -0.95
USP39-216ENST00000490193 BLIDQ8IZY5 108 aa9.13□□□□□ -0.95
USP39-216ENST00000490193 DCLK2Q8N568 766 aa9.13□□□□□ -0.95
USP39-216ENST00000490193 RNF149Q8NC42 400 aa9.13□□□□□ -0.95
USP39-216ENST00000490193 ZBTB44Q8NCP5 570 aa9.13□□□□□ -0.95
USP39-216ENST00000490193 NELL1Q92832 810 aa9.13□□□□□ -0.95
USP39-216ENST00000490193 FGF14Q92915 247 aa9.13□□□□□ -0.95
USP39-216ENST00000490193 TMEM143Q96AN5 459 aa9.13□□□□□ -0.95
USP39-216ENST00000490193 JAKMIP1Q96N16 626 aaKnown RBP9.13□□□□□ -0.95
USP39-216ENST00000490193 HINFPQ9BQA5 517 aa9.13□□□□□ -0.95
USP39-216ENST00000490193 SLC4A5Q9BY07 1137 aa9.13□□□□□ -0.95
USP39-216ENST00000490193 NFKBIZQ9BYH8 718 aa9.13□□□□□ -0.95
USP39-216ENST00000490193 IRX2Q9BZI1 471 aaPredicted RBP9.13□□□□□ -0.95
USP39-216ENST00000490193 DDX25Q9UHL0 483 aaKnown RBP9.13□□□□□ -0.95
USP39-216ENST00000490193 ADAM28Q9UKQ2 775 aa9.13□□□□□ -0.95
USP39-216ENST00000490193 CDH7Q9ULB5 785 aa9.13□□□□□ -0.95
USP39-216ENST00000490193 PCDHGA2Q9Y5H1 932 aa9.13□□□□□ -0.95
USP39-216ENST00000490193 ACACBO00763 2458 aa9.12□□□□□ -0.95
USP39-216ENST00000490193 CFAP47Q6ZTR5 3102 aa9.12□□□□□ -0.95
USP39-216ENST00000490193 SF3B1O75533 1304 aaKnown RBP eCLIP9.12□□□□□ -0.95
USP39-216ENST00000490193 TPRP12270 2363 aaKnown RBP9.12□□□□□ -0.95
USP39-216ENST00000490193 TBX3O15119 743 aa9.12□□□□□ -0.95
USP39-216ENST00000490193 LILRB5O75023 590 aa9.12□□□□□ -0.95
USP39-216ENST00000490193 LRRN2O75325 713 aa9.12□□□□□ -0.95
USP39-216ENST00000490193 DEXIO95424 95 aa9.12□□□□□ -0.95
USP39-216ENST00000490193 MYBP10242 640 aa9.12□□□□□ -0.95
USP39-216ENST00000490193 PRKCSHP14314 528 aaPredicted RBP9.12□□□□□ -0.95
USP39-216ENST00000490193 GCFC2P16383 781 aaKnown RBP9.12□□□□□ -0.95
USP39-216ENST00000490193 YWHABP31946 246 aaKnown RBP9.12□□□□□ -0.95
USP39-216ENST00000490193 HSPA4P34932 840 aa9.12□□□□□ -0.95
USP39-216ENST00000490193 FOXK1P85037 733 aa9.12□□□□□ -0.95
USP39-216ENST00000490193 NCBP1Q09161 790 aaKnown RBP9.12□□□□□ -0.95
USP39-216ENST00000490193 EPHA7Q15375 998 aa9.12□□□□□ -0.95
USP39-216ENST00000490193 MLF2Q15773 248 aaPredicted RBP9.12□□□□□ -0.95
USP39-216ENST00000490193 RSPO4Q2I0M5 234 aaPredicted RBP9.12□□□□□ -0.95
USP39-216ENST00000490193 PARM1Q6UWI2 310 aa9.12□□□□□ -0.95
USP39-216ENST00000490193 OTUD6AQ7L8S5 288 aa9.12□□□□□ -0.95
USP39-216ENST00000490193 KRT25Q7Z3Z0 450 aa9.12□□□□□ -0.95
USP39-216ENST00000490193 TRIM22Q8IYM9 498 aa9.12□□□□□ -0.95
USP39-216ENST00000490193 PIK3R5Q8WYR1 880 aa9.12□□□□□ -0.95
USP39-216ENST00000490193 B3GALT6Q96L58 329 aa9.12□□□□□ -0.95
USP39-216ENST00000490193 LXNQ9BS40 222 aa9.12□□□□□ -0.95
USP39-216ENST00000490193 RPP25Q9BUL9 199 aaKnown RBP9.12□□□□□ -0.95
USP39-216ENST00000490193 BCO2Q9BYV7 579 aa9.12□□□□□ -0.95
USP39-216ENST00000490193 NXF3Q9H4D5 531 aaKnown RBP9.12□□□□□ -0.95
USP39-216ENST00000490193 NCOA5Q9HCD5 579 aaKnown RBP9.12□□□□□ -0.95
USP39-216ENST00000490193 XPNPEP1Q9NQW7 623 aa9.12□□□□□ -0.95
USP39-216ENST00000490193 HES2Q9Y543 173 aa9.12□□□□□ -0.95
USP39-216ENST00000490193 SNX14Q9Y5W7 946 aa9.12□□□□□ -0.95
USP39-216ENST00000490193 COL4A2P08572 1712 aa9.11□□□□□ -0.95
USP39-216ENST00000490193 LAMTOR5O43504 91 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms