RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 TUFT1Q9NNX1 390 aa13.73□□□□□ -0.21
CPSF3-204ENST00000489403 ZDHHC7Q9NXF8 308 aa13.73□□□□□ -0.21
CPSF3-204ENST00000489403 EPS15L1Q9UBC2 864 aa13.73□□□□□ -0.21
CPSF3-204ENST00000489403 FBXL21Q9UKT6 434 aa13.73□□□□□ -0.21
CPSF3-204ENST00000489403 VPS13AQ96RL7 3174 aa13.73□□□□□ -0.21
CPSF3-204ENST00000489403 SF3B1O75533 1304 aaKnown RBP eCLIP13.72□□□□□ -0.214e-7■■■■■ 133.7
CPSF3-204ENST00000489403 PRR23AA6NEV1 266 aa13.72□□□□□ -0.21
CPSF3-204ENST00000489403 C1RP00736 705 aa13.72□□□□□ -0.21
CPSF3-204ENST00000489403 CFHP08603 1231 aa13.72□□□□□ -0.21
CPSF3-204ENST00000489403 ATP2B1P20020 1258 aa13.72□□□□□ -0.21
CPSF3-204ENST00000489403 MCM7P33993 719 aa13.72□□□□□ -0.21
CPSF3-204ENST00000489403 HSP90AA2PQ14568 343 aaPredicted RBP13.72□□□□□ -0.21
CPSF3-204ENST00000489403 FAM187BQ17R55 369 aa13.72□□□□□ -0.21
CPSF3-204ENST00000489403 RTP2Q5QGT7 225 aa13.72□□□□□ -0.21
CPSF3-204ENST00000489403 POTEGQ6S5H5 508 aa13.72□□□□□ -0.21
CPSF3-204ENST00000489403 ZBTB8OSQ8IWT0 167 aa13.72□□□□□ -0.21
CPSF3-204ENST00000489403 MCPH1Q8NEM0 835 aa13.72□□□□□ -0.21
CPSF3-204ENST00000489403 HASPINQ8TF76 798 aa13.72□□□□□ -0.21
CPSF3-204ENST00000489403 BSNDQ8WZ55 320 aa13.72□□□□□ -0.21
CPSF3-204ENST00000489403 FZD8Q9H461 694 aa13.72□□□□□ -0.21
CPSF3-204ENST00000489403 PDZD7Q9H5P4 517 aa13.72□□□□□ -0.21
CPSF3-204ENST00000489403 VWA8A3KMH1 1905 aa13.71□□□□□ -0.21
CPSF3-204ENST00000489403 KRBA1A5PL33 1030 aa13.71□□□□□ -0.21
CPSF3-204ENST00000489403 CASTOR2A6NHX0 329 aa13.71□□□□□ -0.21
CPSF3-204ENST00000489403 PTGESO14684 152 aa13.71□□□□□ -0.21
CPSF3-204ENST00000489403 N4BP3O15049 544 aa13.71□□□□□ -0.21
CPSF3-204ENST00000489403 TADA2AO75478 443 aa13.71□□□□□ -0.21
CPSF3-204ENST00000489403 KIF4AO95239 1232 aa13.71□□□□□ -0.21
CPSF3-204ENST00000489403 EDN1P05305 212 aa13.71□□□□□ -0.21
CPSF3-204ENST00000489403 NEK4P51957 841 aa13.71□□□□□ -0.21
CPSF3-204ENST00000489403 GUCY1B3Q02153 619 aa13.71□□□□□ -0.21
CPSF3-204ENST00000489403 CREMQ03060 361 aa13.71□□□□□ -0.21
CPSF3-204ENST00000489403 TUSC3Q13454 348 aa13.71□□□□□ -0.21
CPSF3-204ENST00000489403 PRSS55Q6UWB4 352 aaPredicted RBP13.71□□□□□ -0.21
CPSF3-204ENST00000489403 GET4Q7L5D6 327 aaPredicted RBP13.71□□□□□ -0.21
CPSF3-204ENST00000489403 CCDC105Q8IYK2 499 aa13.71□□□□□ -0.21
CPSF3-204ENST00000489403 SLC44A3Q8N4M1 653 aa13.71□□□□□ -0.21
CPSF3-204ENST00000489403 RTP3Q9BQQ7 232 aa13.71□□□□□ -0.21
CPSF3-204ENST00000489403 POLR3CQ9BUI4 534 aaPredicted RBP13.71□□□□□ -0.21
CPSF3-204ENST00000489403 PRKD2Q9BZL6 878 aa13.71□□□□□ -0.21
CPSF3-204ENST00000489403 CXCL16Q9H2A7 254 aa13.71□□□□□ -0.21
CPSF3-204ENST00000489403 PIDD1Q9HB75 910 aa13.71□□□□□ -0.21
CPSF3-204ENST00000489403 SNTG2Q9NY99 539 aa13.71□□□□□ -0.21
CPSF3-204ENST00000489403 WNT16Q9UBV4 365 aa13.71□□□□□ -0.21
CPSF3-204ENST00000489403 USP20Q9Y2K6 914 aa13.71□□□□□ -0.21
CPSF3-204ENST00000489403 ZMYND10O75800 440 aa13.7□□□□□ -0.22
CPSF3-204ENST00000489403 RECQL4O94761 1208 aa13.7□□□□□ -0.22
CPSF3-204ENST00000489403 PRKCBP05771 671 aa13.7□□□□□ -0.22
CPSF3-204ENST00000489403 SRFP11831 508 aa13.7□□□□□ -0.22
CPSF3-204ENST00000489403 NAB2Q15742 525 aa13.7□□□□□ -0.22
CPSF3-204ENST00000489403 FRMD5Q7Z6J6 570 aa13.7□□□□□ -0.22
CPSF3-204ENST00000489403 NXPE3Q969Y0 559 aa13.7□□□□□ -0.22
CPSF3-204ENST00000489403 NACC1Q96RE7 527 aa13.7□□□□□ -0.22
CPSF3-204ENST00000489403 CLSTN3Q9BQT9 956 aa13.7□□□□□ -0.22
CPSF3-204ENST00000489403 CCDC113Q9H0I3 377 aa13.7□□□□□ -0.22
CPSF3-204ENST00000489403 C2orf40Q9H1Z8 148 aa13.7□□□□□ -0.22
CPSF3-204ENST00000489403 FBXW11Q9UKB1 542 aa13.7□□□□□ -0.22
CPSF3-204ENST00000489403 CA14Q9ULX7 337 aa13.7□□□□□ -0.22
CPSF3-204ENST00000489403 DOCK6Q96HP0 2047 aa13.69□□□□□ -0.22
CPSF3-204ENST00000489403 ARHGEF35A5YM69 484 aa13.69□□□□□ -0.22
CPSF3-204ENST00000489403 THP07101 528 aa13.69□□□□□ -0.22
CPSF3-204ENST00000489403 OR52Z1P0C646 297 aa13.69□□□□□ -0.22
CPSF3-204ENST00000489403 LAMP2P13473 410 aa13.69□□□□□ -0.22
CPSF3-204ENST00000489403 CYP11B2P19099 503 aa13.69□□□□□ -0.22
CPSF3-204ENST00000489403 RPA1P27694 616 aa13.69□□□□□ -0.22
CPSF3-204ENST00000489403 NAMPTP43490 491 aa13.69□□□□□ -0.22
CPSF3-204ENST00000489403 PRPF4BQ13523 1007 aaKnown RBP13.69□□□□□ -0.22
CPSF3-204ENST00000489403 ANGPT1Q15389 498 aa13.69□□□□□ -0.22
CPSF3-204ENST00000489403 MAPK6Q16659 721 aa13.69□□□□□ -0.22
CPSF3-204ENST00000489403 EEF1DP3Q658K8 133 aa13.69□□□□□ -0.22
CPSF3-204ENST00000489403 PADI6Q6TGC4 694 aa13.69□□□□□ -0.22
CPSF3-204ENST00000489403 CEP57Q86XR8 500 aa13.69□□□□□ -0.22
CPSF3-204ENST00000489403 NOSTRINQ8IVI9 506 aa13.69□□□□□ -0.22
CPSF3-204ENST00000489403 DTWD2Q8NBA8 298 aa13.69□□□□□ -0.22
CPSF3-204ENST00000489403 DEPTORQ8TB45 409 aa13.69□□□□□ -0.22
CPSF3-204ENST00000489403 LNX1Q8TBB1 728 aaPredicted RBP13.69□□□□□ -0.22
CPSF3-204ENST00000489403 PIK3R5Q8WYR1 880 aa13.69□□□□□ -0.22
CPSF3-204ENST00000489403 TTPALQ9BTX7 342 aa13.69□□□□□ -0.22
CPSF3-204ENST00000489403 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.69□□□□□ -0.22
CPSF3-204ENST00000489403 ANHXE9PGG2 379 aa13.68□□□□□ -0.22
CPSF3-204ENST00000489403 STK25O00506 426 aa13.68□□□□□ -0.22
CPSF3-204ENST00000489403 ACKR2O00590 384 aa13.68□□□□□ -0.22
CPSF3-204ENST00000489403 LIG1P18858 919 aa13.68□□□□□ -0.22
CPSF3-204ENST00000489403 HTR4Q13639 388 aa13.68□□□□□ -0.22
CPSF3-204ENST00000489403 SAFBQ15424 915 aaKnown RBP eCLIP13.68□□□□□ -0.22
CPSF3-204ENST00000489403 ZNF174Q15697 407 aa13.68□□□□□ -0.22
CPSF3-204ENST00000489403 PSMD5Q16401 504 aa13.68□□□□□ -0.22
CPSF3-204ENST00000489403 ECM1Q16610 540 aa13.68□□□□□ -0.22
CPSF3-204ENST00000489403 TMEM132AQ24JP5 1023 aa13.68□□□□□ -0.22
CPSF3-204ENST00000489403 FAM171A1Q5VUB5 890 aa13.68□□□□□ -0.22
CPSF3-204ENST00000489403 GRASPQ7Z6J2 395 aaPredicted RBP13.68□□□□□ -0.22
CPSF3-204ENST00000489403 ST13P5Q8NFI4 369 aaPredicted RBP13.68□□□□□ -0.22
CPSF3-204ENST00000489403 ERMNQ8TAM6 284 aa13.68□□□□□ -0.22
CPSF3-204ENST00000489403 GPR152Q8TDT2 470 aa13.68□□□□□ -0.22
CPSF3-204ENST00000489403 NKD2Q969F2 451 aaPredicted RBP13.68□□□□□ -0.22
CPSF3-204ENST00000489403 ADPGKQ9BRR6 497 aa13.68□□□□□ -0.22
CPSF3-204ENST00000489403 KIFC3Q9BVG8 833 aa13.68□□□□□ -0.22
CPSF3-204ENST00000489403 NUMBLQ9Y6R0 609 aa13.68□□□□□ -0.22
CPSF3-204ENST00000489403 MYH15Q9Y2K3 1946 aa13.68□□□□□ -0.22
CPSF3-204ENST00000489403 TRIP11Q15643 1979 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms