RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 SLC4A7Q9Y6M7 1214 aa11.26□□□□□ -0.61
SKA1-204ENST00000488454 PSMA7O14818 248 aa11.25□□□□□ -0.61
SKA1-204ENST00000488454 CALUO43852 315 aaPredicted RBP11.25□□□□□ -0.61
SKA1-204ENST00000488454 NPTXRO95502 500 aa11.25□□□□□ -0.61
SKA1-204ENST00000488454 EOMESO95936 686 aa11.25□□□□□ -0.61
SKA1-204ENST00000488454 PIGRP01833 764 aa11.25□□□□□ -0.61
SKA1-204ENST00000488454 MCF2P10911 925 aa11.25□□□□□ -0.61
SKA1-204ENST00000488454 HARSP12081 509 aaKnown RBP11.25□□□□□ -0.61
SKA1-204ENST00000488454 BMP8BP34820 402 aa11.25□□□□□ -0.61
SKA1-204ENST00000488454 FAM189BP81408 668 aa11.25□□□□□ -0.61
SKA1-204ENST00000488454 KCNA1Q09470 495 aa11.25□□□□□ -0.61
SKA1-204ENST00000488454 HSP90AA2PQ14568 343 aaPredicted RBP11.25□□□□□ -0.61
SKA1-204ENST00000488454 KYAT1Q16773 422 aa11.25□□□□□ -0.61
SKA1-204ENST00000488454 BMT2Q1RMZ1 405 aa11.25□□□□□ -0.61
SKA1-204ENST00000488454 ARMCX5Q6P1M9 558 aa11.25□□□□□ -0.61
SKA1-204ENST00000488454 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.25□□□□□ -0.61
SKA1-204ENST00000488454 RTN4RL1Q86UN2 441 aaPredicted RBP11.25□□□□□ -0.61
SKA1-204ENST00000488454 CDR2LQ86X02 465 aaPredicted RBP11.25□□□□□ -0.61
SKA1-204ENST00000488454 SMYD4Q8IYR2 804 aaPredicted RBP11.25□□□□□ -0.61
SKA1-204ENST00000488454 MLKLQ8NB16 471 aa11.25□□□□□ -0.61
SKA1-204ENST00000488454 RNF169Q8NCN4 708 aa11.25□□□□□ -0.61
SKA1-204ENST00000488454 POMGNT1Q8WZA1 660 aa11.25□□□□□ -0.61
SKA1-204ENST00000488454 VWCEQ96DN2 955 aa11.25□□□□□ -0.61
SKA1-204ENST00000488454 RNPC3Q96LT9 517 aaKnown RBP11.25□□□□□ -0.61
SKA1-204ENST00000488454 TRAIPQ9BWF2 469 aa11.25□□□□□ -0.61
SKA1-204ENST00000488454 TMEM63CQ9P1W3 806 aa11.25□□□□□ -0.61
SKA1-204ENST00000488454 DACH1Q9UI36 760 aa11.25□□□□□ -0.61
SKA1-204ENST00000488454 PCDHB2Q9Y5E7 798 aa11.25□□□□□ -0.61
SKA1-204ENST00000488454 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.24□□□□□ -0.61
SKA1-204ENST00000488454 C9IYK1 514 aa11.24□□□□□ -0.61
SKA1-204ENST00000488454 ANKRD63C9JTQ0 380 aa11.24□□□□□ -0.61
SKA1-204ENST00000488454 KIAA0391O15091 583 aaKnown RBP11.24□□□□□ -0.61
SKA1-204ENST00000488454 ZNF623O75123 536 aa11.24□□□□□ -0.61
SKA1-204ENST00000488454 UPP2O95045 317 aa11.24□□□□□ -0.61
SKA1-204ENST00000488454 LDHAP00338 332 aaKnown RBP11.24□□□□□ -0.61
SKA1-204ENST00000488454 ITGA4P13612 1032 aa11.24□□□□□ -0.61
SKA1-204ENST00000488454 GARTP22102 1010 aa11.24□□□□□ -0.61
SKA1-204ENST00000488454 PRCPP42785 496 aa11.24□□□□□ -0.61
SKA1-204ENST00000488454 NLRP12P59046 1061 aa11.24□□□□□ -0.61
SKA1-204ENST00000488454 WDR5P61964 334 aaKnown RBP11.24□□□□□ -0.61
SKA1-204ENST00000488454 MCL1Q07820 350 aa11.24□□□□□ -0.61
SKA1-204ENST00000488454 NOLC1Q14978 699 aaKnown RBP eCLIP11.24□□□□□ -0.61
SKA1-204ENST00000488454 SHHQ15465 462 aa11.24□□□□□ -0.61
SKA1-204ENST00000488454 TCTN1Q2MV58 587 aa11.24□□□□□ -0.61
SKA1-204ENST00000488454 COBLL1Q53SF7 1204 aa11.24□□□□□ -0.61
SKA1-204ENST00000488454 EEF1DP3Q658K8 133 aa11.24□□□□□ -0.61
SKA1-204ENST00000488454 ECHDC2Q86YB7 292 aa11.24□□□□□ -0.61
SKA1-204ENST00000488454 NPAS4Q8IUM7 802 aa11.24□□□□□ -0.61
SKA1-204ENST00000488454 ABI1Q8IZP0 508 aa11.24□□□□□ -0.61
SKA1-204ENST00000488454 PHOSPHO2Q8TCD6 241 aa11.24□□□□□ -0.61
SKA1-204ENST00000488454 DHTKD1Q96HY7 919 aaPredicted RBP11.24□□□□□ -0.61
SKA1-204ENST00000488454 ZBTB45Q96K62 511 aaPredicted RBP11.24□□□□□ -0.61
SKA1-204ENST00000488454 TSG101Q99816 390 aa11.24□□□□□ -0.61
SKA1-204ENST00000488454 MSTO1Q9BUK6 570 aa11.24□□□□□ -0.61
SKA1-204ENST00000488454 CCDC94Q9BW85 323 aaPredicted RBP11.24□□□□□ -0.61
SKA1-204ENST00000488454 EIF2AQ9BY44 585 aaKnown RBP11.24□□□□□ -0.61
SKA1-204ENST00000488454 ELAC1Q9H777 363 aaKnown RBP11.24□□□□□ -0.61
SKA1-204ENST00000488454 PTPRHQ9HD43 1115 aa11.24□□□□□ -0.61
SKA1-204ENST00000488454 UBN1Q9NPG3 1134 aa11.24□□□□□ -0.61
SKA1-204ENST00000488454 TYW1Q9NV66 732 aaKnown RBP11.24□□□□□ -0.61
SKA1-204ENST00000488454 PARP2Q9UGN5 583 aa11.24□□□□□ -0.61
SKA1-204ENST00000488454 ALPK3Q96L96 1907 aa11.24□□□□□ -0.61
SKA1-204ENST00000488454 A0A0B4J269 797 aa11.23□□□□□ -0.61
SKA1-204ENST00000488454 BICDL2A1A5D9 508 aa11.23□□□□□ -0.61
SKA1-204ENST00000488454 PDXKO00764 312 aa11.23□□□□□ -0.61
SKA1-204ENST00000488454 HOXA2O43364 376 aa11.23□□□□□ -0.61
SKA1-204ENST00000488454 EDN1P05305 212 aa11.23□□□□□ -0.61
SKA1-204ENST00000488454 PROZP22891 400 aa11.23□□□□□ -0.61
SKA1-204ENST00000488454 RPL13P26373 211 aaKnown RBP11.23□□□□□ -0.61
SKA1-204ENST00000488454 YARSP54577 528 aaKnown RBP11.23□□□□□ -0.61
SKA1-204ENST00000488454 UBXN11Q5T124 520 aa11.23□□□□□ -0.61
SKA1-204ENST00000488454 KLHL10Q6JEL2 608 aa11.23□□□□□ -0.61
SKA1-204ENST00000488454 RBM43Q6ZSC3 357 aaKnown RBP11.23□□□□□ -0.61
SKA1-204ENST00000488454 MRPL10Q7Z7H8 261 aaKnown RBP11.23□□□□□ -0.61
SKA1-204ENST00000488454 THNSL1Q8IYQ7 743 aa11.23□□□□□ -0.61
SKA1-204ENST00000488454 ADSSL1Q8N142 457 aa11.23□□□□□ -0.61
SKA1-204ENST00000488454 RDH13Q8NBN7 331 aa11.23□□□□□ -0.61
SKA1-204ENST00000488454 NOC3LQ8WTT2 800 aaKnown RBP11.23□□□□□ -0.61
SKA1-204ENST00000488454 LINC01599Q8WXQ3 324 aa11.23□□□□□ -0.61
SKA1-204ENST00000488454 TOP1MTQ969P6 601 aa11.23□□□□□ -0.61
SKA1-204ENST00000488454 ACAP3Q96P50 834 aa11.23□□□□□ -0.61
SKA1-204ENST00000488454 SLC9A7Q96T83 725 aa11.23□□□□□ -0.61
SKA1-204ENST00000488454 APOL6Q9BWW8 343 aa11.23□□□□□ -0.61
SKA1-204ENST00000488454 CDT1Q9H211 546 aa11.23□□□□□ -0.61
SKA1-204ENST00000488454 PCIF1Q9H4Z3 704 aa11.23□□□□□ -0.61
SKA1-204ENST00000488454 IL21Q9HBE4 155 aa11.23□□□□□ -0.61
SKA1-204ENST00000488454 KIAA1586Q9HCI6 787 aa11.23□□□□□ -0.61
SKA1-204ENST00000488454 AGPAT3Q9NRZ7 376 aa11.23□□□□□ -0.61
SKA1-204ENST00000488454 ANO10Q9NW15 660 aa11.23□□□□□ -0.61
SKA1-204ENST00000488454 TMEM161AQ9NX61 479 aa11.23□□□□□ -0.61
SKA1-204ENST00000488454 AGO2Q9UKV8 859 aaKnown RBP11.23□□□□□ -0.61
SKA1-204ENST00000488454 IPPQ9Y573 584 aa11.23□□□□□ -0.61
SKA1-204ENST00000488454 STYXL1Q9Y6J8 313 aa11.23□□□□□ -0.61
SKA1-204ENST00000488454 CLIC2O15247 247 aa11.22□□□□□ -0.61
SKA1-204ENST00000488454 OGTO15294 1046 aa11.22□□□□□ -0.61
SKA1-204ENST00000488454 TGFB1I1O43294 461 aa11.22□□□□□ -0.61
SKA1-204ENST00000488454 CLTAP09496 248 aa11.22□□□□□ -0.61
SKA1-204ENST00000488454 ATP2A2P16615 1042 aaKnown RBP11.22□□□□□ -0.61
SKA1-204ENST00000488454 BMP6P22004 513 aa11.22□□□□□ -0.61
SKA1-204ENST00000488454 HOXD13P35453 343 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms