RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 MYCT1Q8N699 235 aa20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 SPIRE2Q8WWL2 714 aa20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 DCLRE1BQ9H816 532 aa20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 DCTN4Q9UJW0 460 aa20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 G3BP2Q9UN86 482 aaKnown RBP20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 SLC16A3O15427 465 aaKnown RBP20.04■□□□□ 0.8
CCDC88B-207ENST00000479965 KRT15P19012 456 aa20.04■□□□□ 0.8
CCDC88B-207ENST00000479965 MYL7Q01449 175 aa20.04■□□□□ 0.8
CCDC88B-207ENST00000479965 CDR2Q01850 454 aa20.04■□□□□ 0.8
CCDC88B-207ENST00000479965 PHLDB3Q6NSJ2 640 aa20.04■□□□□ 0.8
CCDC88B-207ENST00000479965 CCNJLQ8IV13 435 aa20.04■□□□□ 0.8
CCDC88B-207ENST00000479965 SCG3Q8WXD2 468 aaKnown RBP20.04■□□□□ 0.8
CCDC88B-207ENST00000479965 EZH1Q92800 747 aaPredicted RBP20.04■□□□□ 0.8
CCDC88B-207ENST00000479965 CCDC77Q9BR77 488 aa20.04■□□□□ 0.8
CCDC88B-207ENST00000479965 JMJD4Q9H9V9 463 aa20.04■□□□□ 0.8
CCDC88B-207ENST00000479965 RGL1Q9NZL6 768 aa20.04■□□□□ 0.8
CCDC88B-207ENST00000479965 ZFP69BQ9UJL9 534 aa20.04■□□□□ 0.8
CCDC88B-207ENST00000479965 ANKRD36CQ5JPF3 1778 aa20.04■□□□□ 0.8
CCDC88B-207ENST00000479965 TGFB1I1O43294 461 aa20.04■□□□□ 0.8
CCDC88B-207ENST00000479965 RNF8O76064 485 aa20.04■□□□□ 0.8
CCDC88B-207ENST00000479965 ATF2P15336 505 aa20.04■□□□□ 0.8
CCDC88B-207ENST00000479965 MARK3P27448 753 aa20.04■□□□□ 0.8
CCDC88B-207ENST00000479965 INPP5DQ92835 1189 aa20.04■□□□□ 0.8
CCDC88B-207ENST00000479965 GPR101Q96P66 508 aaPredicted RBP20.04■□□□□ 0.8
CCDC88B-207ENST00000479965 UBN1Q9NPG3 1134 aa20.04■□□□□ 0.8
CCDC88B-207ENST00000479965 ATP8B3O60423 1300 aa20.03■□□□□ 0.8
CCDC88B-207ENST00000479965 GTPBP10A4D1E9 387 aaKnown RBP20.03■□□□□ 0.8
CCDC88B-207ENST00000479965 WDR91A4D1P6 747 aa20.03■□□□□ 0.8
CCDC88B-207ENST00000479965 GGPS1O95749 300 aa20.03■□□□□ 0.8
CCDC88B-207ENST00000479965 VHLP40337 213 aa20.03■□□□□ 0.8
CCDC88B-207ENST00000479965 SERPINB4P48594 390 aa20.03■□□□□ 0.8
CCDC88B-207ENST00000479965 CUL3Q13618 768 aa20.03■□□□□ 0.8
CCDC88B-207ENST00000479965 SGSM1Q2NKQ1 1148 aa20.03■□□□□ 0.8
CCDC88B-207ENST00000479965 C11orf63Q6NUN7 778 aa20.03■□□□□ 0.8
CCDC88B-207ENST00000479965 MTHFD1LQ6UB35 978 aa20.03■□□□□ 0.8
CCDC88B-207ENST00000479965 DSTYKQ6XUX3 929 aa20.03■□□□□ 0.8
CCDC88B-207ENST00000479965 KCTD1Q719H9 257 aa20.03■□□□□ 0.8
CCDC88B-207ENST00000479965 SNF8Q96H20 258 aa20.03■□□□□ 0.8
CCDC88B-207ENST00000479965 DDX50Q9BQ39 737 aaKnown RBP20.03■□□□□ 0.8
CCDC88B-207ENST00000479965 NPHS2Q9NP85 383 aa20.03■□□□□ 0.8
CCDC88B-207ENST00000479965 TOGARAM1Q9Y4F4 1720 aa20.03■□□□□ 0.8
CCDC88B-207ENST00000479965 TP73O15350 636 aa20.03■□□□□ 0.8
CCDC88B-207ENST00000479965 SKIP12755 728 aa20.03■□□□□ 0.8
CCDC88B-207ENST00000479965 BTDP43251 543 aa20.03■□□□□ 0.8
CCDC88B-207ENST00000479965 MTDHQ86UE4 582 aaKnown RBP20.03■□□□□ 0.8
CCDC88B-207ENST00000479965 ZNF333Q96JL9 665 aa20.03■□□□□ 0.8
CCDC88B-207ENST00000479965 GORASP1Q9BQQ3 440 aa20.03■□□□□ 0.8
CCDC88B-207ENST00000479965 SYT11Q9BT88 431 aa20.03■□□□□ 0.8
CCDC88B-207ENST00000479965 WNT8AQ9H1J5 351 aa20.03■□□□□ 0.8
CCDC88B-207ENST00000479965 BCL9O00512 1426 aa20.03■□□□□ 0.8
CCDC88B-207ENST00000479965 PNMA6FA0A0J9YX94 578 aa20.02■□□□□ 0.8
CCDC88B-207ENST00000479965 USP17L10C9JJH3 530 aa20.02■□□□□ 0.8
CCDC88B-207ENST00000479965 UBAP1LF5GYI3 381 aa20.02■□□□□ 0.8
CCDC88B-207ENST00000479965 KRT36O76013 467 aa20.02■□□□□ 0.8
CCDC88B-207ENST00000479965 POLD1P28340 1107 aa20.02■□□□□ 0.8
CCDC88B-207ENST00000479965 CACNA2D1P54289 1103 aa20.02■□□□□ 0.8
CCDC88B-207ENST00000479965 WASHC2DQ5SRD0 308 aa20.02■□□□□ 0.8
CCDC88B-207ENST00000479965 CADPS2Q86UW7 1296 aa20.02■□□□□ 0.8
CCDC88B-207ENST00000479965 ENDOVQ8N8Q3 282 aaKnown RBP20.02■□□□□ 0.8
CCDC88B-207ENST00000479965 ZNF526Q8TF50 670 aaPredicted RBP20.02■□□□□ 0.8
CCDC88B-207ENST00000479965 FBXO41Q8TF61 875 aa20.02■□□□□ 0.8
CCDC88B-207ENST00000479965 NUP85Q9BW27 656 aa20.02■□□□□ 0.8
CCDC88B-207ENST00000479965 WHRNQ9P202 907 aa20.02■□□□□ 0.8
CCDC88B-207ENST00000479965 FRMD4BQ9Y2L6 1034 aa20.02■□□□□ 0.8
CCDC88B-207ENST00000479965 STARD13Q9Y3M8 1113 aa20.02■□□□□ 0.8
CCDC88B-207ENST00000479965 hCG_1984214I3L0E3 225 aa20.02■□□□□ 0.8
CCDC88B-207ENST00000479965 CAPN9O14815 690 aa20.02■□□□□ 0.8
CCDC88B-207ENST00000479965 FAM13AO94988 1023 aa20.02■□□□□ 0.8
CCDC88B-207ENST00000479965 UBTFL6P0CB48 400 aaPredicted RBP20.02■□□□□ 0.8
CCDC88B-207ENST00000479965 ITIH2P19823 946 aa20.02■□□□□ 0.8
CCDC88B-207ENST00000479965 SLC5A9Q2M3M2 681 aa20.02■□□□□ 0.8
CCDC88B-207ENST00000479965 IRGCQ6NXR0 463 aa20.02■□□□□ 0.8
CCDC88B-207ENST00000479965 C16orf86Q6ZW13 317 aa20.02■□□□□ 0.8
CCDC88B-207ENST00000479965 ZNF713Q8N859 430 aaPredicted RBP20.02■□□□□ 0.8
CCDC88B-207ENST00000479965 SYT2Q8N9I0 419 aaPredicted RBP20.02■□□□□ 0.8
CCDC88B-207ENST00000479965 ZNF564Q8TBZ8 553 aaPredicted RBP20.02■□□□□ 0.8
CCDC88B-207ENST00000479965 ABLIM1O14639 778 aa20.02■□□□□ 0.79
CCDC88B-207ENST00000479965 CA4P22748 312 aa20.02■□□□□ 0.79
CCDC88B-207ENST00000479965 SIX1Q15475 284 aaPredicted RBP20.02■□□□□ 0.79
CCDC88B-207ENST00000479965 SLC30A10Q6XR72 485 aa20.02■□□□□ 0.79
CCDC88B-207ENST00000479965 PHLDB2Q86SQ0 1253 aa20.02■□□□□ 0.79
CCDC88B-207ENST00000479965 ERMNQ8TAM6 284 aa20.02■□□□□ 0.79
CCDC88B-207ENST00000479965 GBP5Q96PP8 586 aa20.02■□□□□ 0.79
CCDC88B-207ENST00000479965 LRCH1Q9Y2L9 728 aa20.02■□□□□ 0.79
CCDC88B-207ENST00000479965 DYNC1LI1Q9Y6G9 523 aaKnown RBP20.02■□□□□ 0.79
CCDC88B-207ENST00000479965 ZCCHC18P0CG32 403 aa20.01■□□□□ 0.79
CCDC88B-207ENST00000479965 SPARCL1Q14515 664 aa20.01■□□□□ 0.79
CCDC88B-207ENST00000479965 OR52E8Q6IFG1 317 aa20.01■□□□□ 0.79
CCDC88B-207ENST00000479965 CCDC125Q86Z20 511 aa20.01■□□□□ 0.79
CCDC88B-207ENST00000479965 SCYL3Q8IZE3 742 aa20.01■□□□□ 0.79
CCDC88B-207ENST00000479965 HEMGNQ9BXL5 484 aa20.01■□□□□ 0.79
CCDC88B-207ENST00000479965 USP20Q9Y2K6 914 aa20.01■□□□□ 0.79
CCDC88B-207ENST00000479965 EXOC1LA0A1B0GW35 172 aa20.01■□□□□ 0.79
CCDC88B-207ENST00000479965 SMARCA1P28370 1054 aa20.01■□□□□ 0.79
CCDC88B-207ENST00000479965 TMEM63BQ5T3F8 832 aa20.01■□□□□ 0.79
CCDC88B-207ENST00000479965 RASIP1Q5U651 963 aa20.01■□□□□ 0.79
CCDC88B-207ENST00000479965 FOXB2Q5VYV0 432 aa20.01■□□□□ 0.79
CCDC88B-207ENST00000479965 C7orf43Q8WVR3 580 aa20.01■□□□□ 0.79
CCDC88B-207ENST00000479965 PCMTD2Q9NV79 361 aa20.01■□□□□ 0.79
CCDC88B-207ENST00000479965 ZNF652Q9Y2D9 606 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms