RNA–Protein interactions for RNA: ENST00000478938.1

SDF4-206, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,591 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-206ENST00000478938 POTEIP0CG38 1075 aa22.61■■□□□ 1.21
SDF4-206ENST00000478938 ZFXP17010 805 aaPredicted RBP22.61■■□□□ 1.21
SDF4-206ENST00000478938 RGS2P41220 211 aa22.61■■□□□ 1.21
SDF4-206ENST00000478938 PPATQ06203 517 aa22.61■■□□□ 1.21
SDF4-206ENST00000478938 KCNH2Q12809 1159 aa22.61■■□□□ 1.21
SDF4-206ENST00000478938 CALCOCO2Q13137 446 aa22.61■■□□□ 1.21
SDF4-206ENST00000478938 GRB10Q13322 594 aa22.61■■□□□ 1.21
SDF4-206ENST00000478938 DPY19L2P1Q6NXN4 242 aa22.61■■□□□ 1.21
SDF4-206ENST00000478938 CCDC174Q6PII3 467 aa22.61■■□□□ 1.21
SDF4-206ENST00000478938 POTEEQ6S8J3 1075 aa22.61■■□□□ 1.21
SDF4-206ENST00000478938 OLFML1Q6UWY5 402 aa22.61■■□□□ 1.21
SDF4-206ENST00000478938 OTOAQ7RTW8 1153 aa22.61■■□□□ 1.21
SDF4-206ENST00000478938 PHLDB2Q86SQ0 1253 aa22.61■■□□□ 1.21
SDF4-206ENST00000478938 SPATA5Q8NB90 893 aa22.61■■□□□ 1.21
SDF4-206ENST00000478938 CEP70Q8NHQ1 597 aa22.61■■□□□ 1.21
SDF4-206ENST00000478938 KRT35Q92764 455 aa22.61■■□□□ 1.21
SDF4-206ENST00000478938 CALML4Q96GE6 196 aa22.61■■□□□ 1.21
SDF4-206ENST00000478938 PWWP2AQ96N64 755 aa22.61■■□□□ 1.21
SDF4-206ENST00000478938 UNC45AQ9H3U1 944 aa22.61■■□□□ 1.21
SDF4-206ENST00000478938 USP54Q70EL1 1684 aa22.61■■□□□ 1.21
SDF4-206ENST00000478938 TP73O15350 636 aa22.61■■□□□ 1.21
SDF4-206ENST00000478938 BAG2O95816 211 aa22.61■■□□□ 1.21
SDF4-206ENST00000478938 UBE4AQ14139 1066 aa22.61■■□□□ 1.21
SDF4-206ENST00000478938 ACAD11Q709F0 780 aa22.61■■□□□ 1.21
SDF4-206ENST00000478938 KCNN1Q92952 543 aa22.61■■□□□ 1.21
SDF4-206ENST00000478938 CNNM1Q9NRU3 951 aa22.61■■□□□ 1.21
SDF4-206ENST00000478938 SMIM31A0A1B0GVY4 71 aa22.6■■□□□ 1.21
SDF4-206ENST00000478938 M0R2N6 131 aa22.6■■□□□ 1.21
SDF4-206ENST00000478938 VILLO15195 856 aa22.6■■□□□ 1.21
SDF4-206ENST00000478938 HNRNPCL1O60812 293 aaKnown RBP22.6■■□□□ 1.21
SDF4-206ENST00000478938 TTC4O95801 387 aa22.6■■□□□ 1.21
SDF4-206ENST00000478938 CHRNB2P17787 502 aa22.6■■□□□ 1.21
SDF4-206ENST00000478938 GSTM4Q03013 218 aa22.6■■□□□ 1.21
SDF4-206ENST00000478938 LNX1Q8TBB1 728 aaPredicted RBP22.6■■□□□ 1.21
SDF4-206ENST00000478938 GAB3Q8WWW8 586 aa22.6■■□□□ 1.21
SDF4-206ENST00000478938 ARHGEF26Q96DR7 871 aa22.6■■□□□ 1.21
SDF4-206ENST00000478938 HSPBAP1Q96EW2 488 aa22.6■■□□□ 1.21
SDF4-206ENST00000478938 TTC1Q99614 292 aa22.6■■□□□ 1.21
SDF4-206ENST00000478938 TMEM98Q9Y2Y6 226 aa22.6■■□□□ 1.21
SDF4-206ENST00000478938 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP22.6■■□□□ 1.21
SDF4-206ENST00000478938 THAP12O43422 761 aa22.6■■□□□ 1.21
SDF4-206ENST00000478938 FGFR1P11362 822 aa22.6■■□□□ 1.21
SDF4-206ENST00000478938 GNAT2P19087 354 aa22.6■■□□□ 1.21
SDF4-206ENST00000478938 CRABP2P29373 138 aa22.6■■□□□ 1.21
SDF4-206ENST00000478938 HOXD12P35452 270 aa22.6■■□□□ 1.21
SDF4-206ENST00000478938 LETM2Q2VYF4 491 aa22.6■■□□□ 1.21
SDF4-206ENST00000478938 SPDYAQ5MJ70 313 aa22.6■■□□□ 1.21
SDF4-206ENST00000478938 GJB7Q6PEY0 223 aa22.6■■□□□ 1.21
SDF4-206ENST00000478938 RBM44Q6ZP01 1051 aaKnown RBP22.6■■□□□ 1.21
SDF4-206ENST00000478938 TRIM67Q6ZTA4 783 aa22.6■■□□□ 1.21
SDF4-206ENST00000478938 RAPH1Q70E73 1250 aa22.6■■□□□ 1.21
SDF4-206ENST00000478938 RFFLQ8WZ73 363 aa22.6■■□□□ 1.21
SDF4-206ENST00000478938 ARHGEF1Q92888 912 aaKnown RBP22.6■■□□□ 1.21
SDF4-206ENST00000478938 BTBD7Q9P203 1132 aa22.6■■□□□ 1.21
SDF4-206ENST00000478938 C2CD2LO14523 706 aa22.59■■□□□ 1.21
SDF4-206ENST00000478938 HAUS5O94927 633 aa22.59■■□□□ 1.21
SDF4-206ENST00000478938 CTNNA2P26232 953 aa22.59■■□□□ 1.21
SDF4-206ENST00000478938 RASGRF1Q13972 1273 aa22.59■■□□□ 1.21
SDF4-206ENST00000478938 B3GNT6Q6ZMB0 384 aa22.59■■□□□ 1.21
SDF4-206ENST00000478938 VPS36Q86VN1 386 aa22.59■■□□□ 1.21
SDF4-206ENST00000478938 LARP4BQ92615 738 aaKnown RBP22.59■■□□□ 1.21
SDF4-206ENST00000478938 DDX12PQ92771 950 aa22.59■■□□□ 1.21
SDF4-206ENST00000478938 USP29Q9HBJ7 922 aa22.59■■□□□ 1.21
SDF4-206ENST00000478938 NDE1Q9NXR1 346 aa22.59■■□□□ 1.21
SDF4-206ENST00000478938 TAS2R1Q9NYW7 299 aa22.59■■□□□ 1.21
SDF4-206ENST00000478938 KANSL3Q9P2N6 904 aa22.59■■□□□ 1.21
SDF4-206ENST00000478938 LGALS13Q9UHV8 139 aa22.59■■□□□ 1.21
SDF4-206ENST00000478938 ADAMTS7Q9UKP4 1686 aa22.59■■□□□ 1.21
SDF4-206ENST00000478938 LAD1O00515 517 aa22.59■■□□□ 1.21
SDF4-206ENST00000478938 CCNT1O60563 726 aaKnown RBP22.59■■□□□ 1.21
SDF4-206ENST00000478938 ZWINTO95229 277 aa22.59■■□□□ 1.21
SDF4-206ENST00000478938 PRKCIP41743 596 aa22.59■■□□□ 1.21
SDF4-206ENST00000478938 CYLC2Q14093 348 aaPredicted RBP22.59■■□□□ 1.21
SDF4-206ENST00000478938 SYNE4Q8N205 404 aa22.59■■□□□ 1.21
SDF4-206ENST00000478938 LRRC43Q8N309 656 aa22.59■■□□□ 1.21
SDF4-206ENST00000478938 POLR3CQ9BUI4 534 aaPredicted RBP22.59■■□□□ 1.21
SDF4-206ENST00000478938 SEC23IPQ9Y6Y8 1000 aaKnown RBP22.59■■□□□ 1.21
SDF4-206ENST00000478938 CCDC160A6NGH7 325 aa22.58■■□□□ 1.21
SDF4-206ENST00000478938 LRRC8BQ6P9F7 803 aa22.58■■□□□ 1.21
SDF4-206ENST00000478938 GLYCTKQ8IVS8 523 aa22.58■■□□□ 1.21
SDF4-206ENST00000478938 ANKRD35Q8N283 1001 aa22.58■■□□□ 1.21
SDF4-206ENST00000478938 HELBQ8NG08 1087 aaPredicted RBP22.58■■□□□ 1.21
SDF4-206ENST00000478938 RFWD2Q8NHY2 731 aa22.58■■□□□ 1.21
SDF4-206ENST00000478938 DGCR14Q96DF8 476 aaKnown RBP22.58■■□□□ 1.21
SDF4-206ENST00000478938 ABHD8Q96I13 439 aa22.58■■□□□ 1.21
SDF4-206ENST00000478938 FAM161BQ96MY7 647 aa22.58■■□□□ 1.21
SDF4-206ENST00000478938 CYLDQ9NQC7 956 aa22.58■■□□□ 1.21
SDF4-206ENST00000478938 NCANO14594 1321 aa22.58■■□□□ 1.21
SDF4-206ENST00000478938 MUTP22033 750 aa22.58■■□□□ 1.21
SDF4-206ENST00000478938 GTF2H1P32780 548 aa22.58■■□□□ 1.21
SDF4-206ENST00000478938 COILP38432 576 aaPredicted RBP22.58■■□□□ 1.21
SDF4-206ENST00000478938 OVGP1Q12889 678 aa22.58■■□□□ 1.21
SDF4-206ENST00000478938 LRRC36Q1X8D7 754 aa22.58■■□□□ 1.21
SDF4-206ENST00000478938 C3orf67Q6ZVT6 689 aa22.58■■□□□ 1.21
SDF4-206ENST00000478938 CYFIP1Q7L576 1253 aa22.58■■□□□ 1.21
SDF4-206ENST00000478938 THEMISQ8N1K5 641 aaPredicted RBP22.58■■□□□ 1.21
SDF4-206ENST00000478938 DDX55Q8NHQ9 600 aaKnown RBP eCLIP22.58■■□□□ 1.215e-12■□□□□ 11.3
SDF4-206ENST00000478938 PNMA5Q96PV4 448 aa22.58■■□□□ 1.21
SDF4-206ENST00000478938 TSPAN18Q96SJ8 248 aa22.58■■□□□ 1.21
SDF4-206ENST00000478938 DYNC1LI1Q9Y6G9 523 aaKnown RBP22.58■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms