RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 TBC1D4O60343 1298 aa20.5■□□□□ 0.87
SHH-205ENST00000472308 TDGF1P13385 188 aa20.5■□□□□ 0.87
SHH-205ENST00000472308 AKAP5P24588 427 aa20.5■□□□□ 0.87
SHH-205ENST00000472308 AXLP30530 894 aa20.5■□□□□ 0.87
SHH-205ENST00000472308 HOXA9P31269 272 aa20.5■□□□□ 0.87
SHH-205ENST00000472308 RPS9P46781 194 aaKnown RBP20.5■□□□□ 0.87
SHH-205ENST00000472308 PTENP60484 403 aa20.5■□□□□ 0.87
SHH-205ENST00000472308 AKAP17AQ02040 695 aaKnown RBP20.5■□□□□ 0.87
SHH-205ENST00000472308 PPP2R5CQ13362 524 aa20.5■□□□□ 0.87
SHH-205ENST00000472308 PPM1LQ5SGD2 360 aa20.5■□□□□ 0.87
SHH-205ENST00000472308 LIN9Q5TKA1 542 aa20.5■□□□□ 0.87
SHH-205ENST00000472308 Q6ZUG5 572 aa20.5■□□□□ 0.87
SHH-205ENST00000472308 PHF20Q9BVI0 1012 aa20.5■□□□□ 0.87
SHH-205ENST00000472308 HCFC1R1Q9NWW0 138 aa20.5■□□□□ 0.87
SHH-205ENST00000472308 NOTCH4Q99466 2003 aa20.49■□□□□ 0.87
SHH-205ENST00000472308 NLRP5P59047 1200 aa20.49■□□□□ 0.87
SHH-205ENST00000472308 FGD1P98174 961 aa20.49■□□□□ 0.87
SHH-205ENST00000472308 GRIK3Q13003 919 aa20.49■□□□□ 0.87
SHH-205ENST00000472308 MTAPQ13126 283 aa20.49■□□□□ 0.87
SHH-205ENST00000472308 KRT32Q14532 448 aa20.49■□□□□ 0.87
SHH-205ENST00000472308 PCBP1Q15365 356 aaKnown RBP eCLIP20.49■□□□□ 0.87
SHH-205ENST00000472308 NPY5RQ15761 445 aa20.49■□□□□ 0.87
SHH-205ENST00000472308 POTEHQ6S545 545 aa20.49■□□□□ 0.87
SHH-205ENST00000472308 MOXD1Q6UVY6 613 aa20.49■□□□□ 0.87
SHH-205ENST00000472308 EXOC8Q8IYI6 725 aa20.49■□□□□ 0.87
SHH-205ENST00000472308 ZNF687Q8N1G0 1237 aa20.49■□□□□ 0.87
SHH-205ENST00000472308 LNX1Q8TBB1 728 aaPredicted RBP20.49■□□□□ 0.87
SHH-205ENST00000472308 PIK3R5Q8WYR1 880 aa20.49■□□□□ 0.87
SHH-205ENST00000472308 XPNPEP1Q9NQW7 623 aa20.49■□□□□ 0.87
SHH-205ENST00000472308 SH3GLB2Q9NR46 395 aa20.49■□□□□ 0.87
SHH-205ENST00000472308 PCDHA4Q9UN74 947 aa20.49■□□□□ 0.87
SHH-205ENST00000472308 SF3B1O75533 1304 aaKnown RBP eCLIP20.49■□□□□ 0.87
SHH-205ENST00000472308 ASAP2O43150 1006 aa20.48■□□□□ 0.87
SHH-205ENST00000472308 TADA2AO75478 443 aa20.48■□□□□ 0.87
SHH-205ENST00000472308 HMGB1P09429 215 aaKnown RBP20.48■□□□□ 0.87
SHH-205ENST00000472308 IFNAR1P17181 557 aa20.48■□□□□ 0.87
SHH-205ENST00000472308 ARF4P18085 180 aaPredicted RBP20.48■□□□□ 0.87
SHH-205ENST00000472308 MBTD1Q05BQ5 628 aa20.48■□□□□ 0.87
SHH-205ENST00000472308 HSP90AA2PQ14568 343 aaPredicted RBP20.48■□□□□ 0.87
SHH-205ENST00000472308 IFNLR1Q8IU57 520 aaPredicted RBP20.48■□□□□ 0.87
SHH-205ENST00000472308 SLC7A14Q8TBB6 771 aa20.48■□□□□ 0.87
SHH-205ENST00000472308 HASPINQ8TF76 798 aa20.48■□□□□ 0.87
SHH-205ENST00000472308 TCP11Q8WWU5 503 aa20.48■□□□□ 0.87
SHH-205ENST00000472308 PLA2G2FQ9BZM2 168 aa20.48■□□□□ 0.87
SHH-205ENST00000472308 KLK14Q9P0G3 267 aa20.48■□□□□ 0.87
SHH-205ENST00000472308 DDX25Q9UHL0 483 aaKnown RBP20.48■□□□□ 0.87
SHH-205ENST00000472308 POLIQ9UNA4 740 aa20.48■□□□□ 0.87
SHH-205ENST00000472308 DYNC1LI1Q9Y6G9 523 aaKnown RBP20.48■□□□□ 0.87
SHH-205ENST00000472308 ARID2Q68CP9 1835 aa20.48■□□□□ 0.87
SHH-205ENST00000472308 ZMYM2Q9UBW7 1377 aa20.47■□□□□ 0.87
SHH-205ENST00000472308 INO80B-WBP1J3KQ70 363 aa20.47■□□□□ 0.87
SHH-205ENST00000472308 ZBTB39O15060 712 aa20.47■□□□□ 0.87
SHH-205ENST00000472308 B4GALT5O43286 388 aa20.47■□□□□ 0.87
SHH-205ENST00000472308 KIF4AO95239 1232 aa20.47■□□□□ 0.87
SHH-205ENST00000472308 P4HBP07237 508 aaKnown RBP20.47■□□□□ 0.87
SHH-205ENST00000472308 POU2F2P09086 479 aa20.47■□□□□ 0.87
SHH-205ENST00000472308 YWHABP31946 246 aaKnown RBP20.47■□□□□ 0.87
SHH-205ENST00000472308 PSMD5Q16401 504 aa20.47■□□□□ 0.87
SHH-205ENST00000472308 PPM1JQ5JR12 505 aa20.47■□□□□ 0.87
SHH-205ENST00000472308 CDR2LQ86X02 465 aaPredicted RBP20.47■□□□□ 0.87
SHH-205ENST00000472308 ING5Q8WYH8 240 aa20.47■□□□□ 0.87
SHH-205ENST00000472308 NELL2Q99435 816 aa20.47■□□□□ 0.87
SHH-205ENST00000472308 LXNQ9BS40 222 aa20.47■□□□□ 0.87
SHH-205ENST00000472308 TTPALQ9BTX7 342 aa20.47■□□□□ 0.87
SHH-205ENST00000472308 C22orf23Q9BZE7 217 aa20.47■□□□□ 0.87
SHH-205ENST00000472308 KCNMB3Q9NPA1 279 aa20.47■□□□□ 0.87
SHH-205ENST00000472308 HEBP1Q9NRV9 189 aa20.47■□□□□ 0.87
SHH-205ENST00000472308 DNMT3BQ9UBC3 853 aaKnown RBP20.47■□□□□ 0.87
SHH-205ENST00000472308 GMEB2Q9UKD1 530 aa20.47■□□□□ 0.87
SHH-205ENST00000472308 XYLBO75191 536 aa20.46■□□□□ 0.87
SHH-205ENST00000472308 SPEM2Q0P670 501 aa20.46■□□□□ 0.87
SHH-205ENST00000472308 LPAL2Q16609 132 aa20.46■□□□□ 0.87
SHH-205ENST00000472308 FAM171A1Q5VUB5 890 aa20.46■□□□□ 0.87
SHH-205ENST00000472308 ZNF852Q6ZMS4 543 aa20.46■□□□□ 0.87
SHH-205ENST00000472308 C4orf19Q8IY42 314 aa20.46■□□□□ 0.87
SHH-205ENST00000472308 ASAP3Q8TDY4 903 aa20.46■□□□□ 0.87
SHH-205ENST00000472308 FAM126AQ9BYI3 521 aaPredicted RBP20.46■□□□□ 0.87
SHH-205ENST00000472308 TRIM6Q9C030 488 aaPredicted RBP20.46■□□□□ 0.87
SHH-205ENST00000472308 NCOA5Q9HCD5 579 aaKnown RBP20.46■□□□□ 0.87
SHH-205ENST00000472308 RGL1Q9NZL6 768 aa20.46■□□□□ 0.87
SHH-205ENST00000472308 KCNH3Q9ULD8 1083 aa20.46■□□□□ 0.87
SHH-205ENST00000472308 FRYQ5TBA9 3013 aa20.46■□□□□ 0.87
SHH-205ENST00000472308 SLC30A4O14863 429 aa20.45■□□□□ 0.86
SHH-205ENST00000472308 DKC1O60832 514 aaKnown RBP eCLIP20.45■□□□□ 0.86
SHH-205ENST00000472308 ECI2O75521 394 aa20.45■□□□□ 0.86
SHH-205ENST00000472308 NPTXRO95502 500 aa20.45■□□□□ 0.86
SHH-205ENST00000472308 ADCY1Q08828 1119 aa20.45■□□□□ 0.86
SHH-205ENST00000472308 CAPSQ13938 189 aa20.45■□□□□ 0.86
SHH-205ENST00000472308 SLC5A9Q2M3M2 681 aa20.45■□□□□ 0.86
SHH-205ENST00000472308 PABPC1LQ4VXU2 614 aaKnown RBP20.45■□□□□ 0.86
SHH-205ENST00000472308 HACE1Q8IYU2 909 aa20.45■□□□□ 0.86
SHH-205ENST00000472308 BLIDQ8IZY5 108 aa20.45■□□□□ 0.86
SHH-205ENST00000472308 MTRQ99707 1265 aa20.45■□□□□ 0.86
SHH-205ENST00000472308 AGXT2Q9BYV1 514 aa20.45■□□□□ 0.86
SHH-205ENST00000472308 CASTOR2A6NHX0 329 aa20.44■□□□□ 0.86
SHH-205ENST00000472308 NCAM2O15394 837 aa20.44■□□□□ 0.86
SHH-205ENST00000472308 POU5F1BQ06416 359 aa20.44■□□□□ 0.86
SHH-205ENST00000472308 TUSC3Q13454 348 aa20.44■□□□□ 0.86
SHH-205ENST00000472308 MXD4Q14582 209 aaPredicted RBP20.44■□□□□ 0.86
SHH-205ENST00000472308 INF2Q27J81 1249 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms