RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 LTN1O94822 1766 aa5.41□□□□□ -1.54
VPS13A-210ENST00000471439 CBX4O00257 560 aa5.4□□□□□ -1.54
VPS13A-210ENST00000471439 ADRB1P08588 477 aa5.4□□□□□ -1.54
VPS13A-210ENST00000471439 GJA4P35212 333 aa5.4□□□□□ -1.54
VPS13A-210ENST00000471439 MAGEA10P43363 369 aaPredicted RBP5.4□□□□□ -1.54
VPS13A-210ENST00000471439 CDKN1CP49918 316 aaPredicted RBP5.4□□□□□ -1.54
VPS13A-210ENST00000471439 MECP2P51608 486 aaKnown RBP5.4□□□□□ -1.54
VPS13A-210ENST00000471439 EPHB4P54760 987 aa5.4□□□□□ -1.54
VPS13A-210ENST00000471439 TMEM132BQ14DG7 1078 aa5.4□□□□□ -1.54
VPS13A-210ENST00000471439 ACAP1Q15027 740 aa5.4□□□□□ -1.54
VPS13A-210ENST00000471439 SLC4A8Q2Y0W8 1093 aa5.4□□□□□ -1.54
VPS13A-210ENST00000471439 TMEM31Q5JXX7 168 aa5.4□□□□□ -1.54
VPS13A-210ENST00000471439 CATSPEREQ5SY80 951 aa5.4□□□□□ -1.54
VPS13A-210ENST00000471439 ARHGEF18Q6ZSZ5 1173 aa5.4□□□□□ -1.54
VPS13A-210ENST00000471439 LHFPL2Q6ZUX7 228 aa5.4□□□□□ -1.54
VPS13A-210ENST00000471439 RPUSD2Q8IZ73 545 aaKnown RBP5.4□□□□□ -1.54
VPS13A-210ENST00000471439 NXPE1Q8N323 547 aa5.4□□□□□ -1.54
VPS13A-210ENST00000471439 PPM1KQ8N3J5 372 aa5.4□□□□□ -1.54
VPS13A-210ENST00000471439 AFAP1L2Q8N4X5 818 aa5.4□□□□□ -1.54
VPS13A-210ENST00000471439 AJUBAQ96IF1 538 aa5.4□□□□□ -1.54
VPS13A-210ENST00000471439 GNRHR2Q96P88 292 aa5.4□□□□□ -1.54
VPS13A-210ENST00000471439 GDF15Q99988 308 aa5.4□□□□□ -1.54
VPS13A-210ENST00000471439 KATNBL1Q9H079 304 aa5.4□□□□□ -1.54
VPS13A-210ENST00000471439 KIAA1683Q9H0B3 1180 aa5.4□□□□□ -1.54
VPS13A-210ENST00000471439 R3HDMLQ9H3Y0 253 aa5.4□□□□□ -1.54
VPS13A-210ENST00000471439 EPHX3Q9H6B9 360 aa5.4□□□□□ -1.54
VPS13A-210ENST00000471439 POGKQ9P215 609 aa5.4□□□□□ -1.54
VPS13A-210ENST00000471439 CDC42EP3Q9UKI2 254 aa5.4□□□□□ -1.54
VPS13A-210ENST00000471439 JAG2Q9Y219 1238 aa5.4□□□□□ -1.54
VPS13A-210ENST00000471439 B3GALT1Q9Y5Z6 326 aa5.4□□□□□ -1.54
VPS13A-210ENST00000471439 ACACBO00763 2458 aa5.39□□□□□ -1.55
VPS13A-210ENST00000471439 ITGB4P16144 1822 aa5.39□□□□□ -1.55
VPS13A-210ENST00000471439 PRAMEF22A3QJZ6 481 aa5.39□□□□□ -1.55
VPS13A-210ENST00000471439 POLRMTO00411 1230 aaKnown RBP5.39□□□□□ -1.55
VPS13A-210ENST00000471439 DVL2O14641 736 aa5.39□□□□□ -1.55
VPS13A-210ENST00000471439 GSTA4O15217 222 aa5.39□□□□□ -1.55
VPS13A-210ENST00000471439 CHGBP05060 677 aa5.39□□□□□ -1.55
VPS13A-210ENST00000471439 ZBTB48P10074 688 aaPredicted RBP5.39□□□□□ -1.55
VPS13A-210ENST00000471439 NCLP19338 710 aaKnown RBP5.39□□□□□ -1.55
VPS13A-210ENST00000471439 PPP2CBP62714 309 aa5.39□□□□□ -1.55
VPS13A-210ENST00000471439 PPP2CAP67775 309 aa5.39□□□□□ -1.55
VPS13A-210ENST00000471439 IRF9Q00978 393 aa5.39□□□□□ -1.55
VPS13A-210ENST00000471439 CD83Q01151 205 aa5.39□□□□□ -1.55
VPS13A-210ENST00000471439 STRN3Q13033 797 aa5.39□□□□□ -1.55
VPS13A-210ENST00000471439 TOP3AQ13472 1001 aaPredicted RBP5.39□□□□□ -1.55
VPS13A-210ENST00000471439 ITPK1Q13572 414 aa5.39□□□□□ -1.55
VPS13A-210ENST00000471439 TBR1Q16650 682 aa5.39□□□□□ -1.55
VPS13A-210ENST00000471439 WDR72Q3MJ13 1102 aa5.39□□□□□ -1.55
VPS13A-210ENST00000471439 USP50Q70EL3 339 aaPredicted RBP5.39□□□□□ -1.55
VPS13A-210ENST00000471439 LARP4Q71RC2 724 aaKnown RBP eCLIP5.39□□□□□ -1.55
VPS13A-210ENST00000471439 PLEKHH3Q7Z736 793 aa5.39□□□□□ -1.55
VPS13A-210ENST00000471439 DDX53Q86TM3 631 aaKnown RBP5.39□□□□□ -1.55
VPS13A-210ENST00000471439 GPC2Q8N158 579 aa5.39□□□□□ -1.55
VPS13A-210ENST00000471439 DLG3Q92796 817 aa5.39□□□□□ -1.55
VPS13A-210ENST00000471439 ERCC4Q92889 916 aaPredicted RBP5.39□□□□□ -1.55
VPS13A-210ENST00000471439 WNK4Q96J92 1243 aa5.39□□□□□ -1.55
VPS13A-210ENST00000471439 HTATIP2Q9BUP3 242 aa5.39□□□□□ -1.55
VPS13A-210ENST00000471439 JADE2Q9NQC1 790 aa5.39□□□□□ -1.55
VPS13A-210ENST00000471439 GALNT8Q9NY28 637 aa5.39□□□□□ -1.55
VPS13A-210ENST00000471439 SLX4Q8IY92 1834 aa5.39□□□□□ -1.55
VPS13A-210ENST00000471439 POLR2AP24928 1970 aaKnown RBP5.38□□□□□ -1.55
VPS13A-210ENST00000471439 SLC12A8A0AV02 714 aa5.38□□□□□ -1.55
VPS13A-210ENST00000471439 B4E1Z4 1266 aa5.38□□□□□ -1.55
VPS13A-210ENST00000471439 FOXP2O15409 715 aa5.38□□□□□ -1.55
VPS13A-210ENST00000471439 RFC4P35249 363 aa5.38□□□□□ -1.55
VPS13A-210ENST00000471439 SOX5P35711 763 aa5.38□□□□□ -1.55
VPS13A-210ENST00000471439 ID4P47928 161 aa5.38□□□□□ -1.55
VPS13A-210ENST00000471439 KCNQ1P51787 676 aa5.38□□□□□ -1.55
VPS13A-210ENST00000471439 RNF151Q2KHN1 245 aa5.38□□□□□ -1.55
VPS13A-210ENST00000471439 KANK2Q63ZY3 851 aa5.38□□□□□ -1.55
VPS13A-210ENST00000471439 CREB3L3Q68CJ9 461 aa5.38□□□□□ -1.55
VPS13A-210ENST00000471439 GLB1LQ6UWU2 654 aa5.38□□□□□ -1.55
VPS13A-210ENST00000471439 DLK2Q6UY11 383 aa5.38□□□□□ -1.55
VPS13A-210ENST00000471439 UBE2R2Q712K3 238 aaPredicted RBP5.38□□□□□ -1.55
VPS13A-210ENST00000471439 C2CD5Q86YS7 1000 aa5.38□□□□□ -1.55
VPS13A-210ENST00000471439 TDHQ8IZJ6 230 aa5.38□□□□□ -1.55
VPS13A-210ENST00000471439 C2orf69Q8N8R5 385 aa5.38□□□□□ -1.55
VPS13A-210ENST00000471439 HIPK4Q8NE63 616 aa5.38□□□□□ -1.55
VPS13A-210ENST00000471439 GBP4Q96PP9 640 aa5.38□□□□□ -1.55
VPS13A-210ENST00000471439 PUS7Q96PZ0 661 aaKnown RBP5.38□□□□□ -1.55
VPS13A-210ENST00000471439 LRRC37BQ96QE4 947 aa5.38□□□□□ -1.55
VPS13A-210ENST00000471439 KCNH7Q9NS40 1196 aa5.38□□□□□ -1.55
VPS13A-210ENST00000471439 H2AFY2Q9P0M6 372 aaPredicted RBP5.38□□□□□ -1.55
VPS13A-210ENST00000471439 PTPRZ1P23471 2315 aaPredicted RBP5.38□□□□□ -1.55
VPS13A-210ENST00000471439 ALPK3Q96L96 1907 aa5.38□□□□□ -1.55
VPS13A-210ENST00000471439 VPS8Q8N3P4 1428 aa5.38□□□□□ -1.55
VPS13A-210ENST00000471439 ASH1LQ9NR48 2969 aaKnown RBP5.37□□□□□ -1.55
VPS13A-210ENST00000471439 LAMB2P55268 1798 aa5.37□□□□□ -1.55
VPS13A-210ENST00000471439 BCORQ6W2J9 1755 aa5.37□□□□□ -1.55
VPS13A-210ENST00000471439 ZFHX2Q9C0A1 2572 aaPredicted RBP5.37□□□□□ -1.55
VPS13A-210ENST00000471439 hCG_2014768A0A024R1R8 64 aa5.37□□□□□ -1.55
VPS13A-210ENST00000471439 NPEPPSL1A6NEC2 478 aa5.37□□□□□ -1.55
VPS13A-210ENST00000471439 FZD9O00144 591 aa5.37□□□□□ -1.55
VPS13A-210ENST00000471439 EYA4O95677 639 aa5.37□□□□□ -1.55
VPS13A-210ENST00000471439 INSRRP14616 1297 aa5.37□□□□□ -1.55
VPS13A-210ENST00000471439 ZNF20P17024 532 aa5.37□□□□□ -1.55
VPS13A-210ENST00000471439 ITGB8P26012 769 aa5.37□□□□□ -1.55
VPS13A-210ENST00000471439 FLT3P36888 993 aa5.37□□□□□ -1.55
VPS13A-210ENST00000471439 HERVK_113P62684 666 aa5.37□□□□□ -1.55
VPS13A-210ENST00000471439 DSG1Q02413 1049 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms