RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 YARSP54577 528 aaKnown RBP19.3■□□□□ 0.68
COL7A1-206ENST00000466591 DSG1Q02413 1049 aa19.3■□□□□ 0.68
COL7A1-206ENST00000466591 DMP1Q13316 513 aaPredicted RBP19.3■□□□□ 0.68
COL7A1-206ENST00000466591 TUSC3Q13454 348 aa19.3■□□□□ 0.68
COL7A1-206ENST00000466591 PDIA5Q14554 519 aa19.3■□□□□ 0.68
COL7A1-206ENST00000466591 C15orf39Q6ZRI6 1047 aa19.3■□□□□ 0.68
COL7A1-206ENST00000466591 ALYREFQ86V81 257 aaKnown RBP19.3■□□□□ 0.68
COL7A1-206ENST00000466591 ZDHHC14Q8IZN3 488 aa19.3■□□□□ 0.68
COL7A1-206ENST00000466591 HASPINQ8TF76 798 aa19.3■□□□□ 0.68
COL7A1-206ENST00000466591 BSNDQ8WZ55 320 aa19.3■□□□□ 0.68
COL7A1-206ENST00000466591 POLD4Q9HCU8 107 aa19.3■□□□□ 0.68
COL7A1-206ENST00000466591 PCDHB6Q9Y5E3 794 aa19.3■□□□□ 0.68
COL7A1-206ENST00000466591 F8W810 466 aa19.29■□□□□ 0.68
COL7A1-206ENST00000466591 SPATA31D3P0C874 917 aa19.29■□□□□ 0.68
COL7A1-206ENST00000466591 U2AF2P26368 475 aaKnown RBP eCLIP19.29■□□□□ 0.68
COL7A1-206ENST00000466591 PTPN5P54829 565 aa19.29■□□□□ 0.68
COL7A1-206ENST00000466591 ATF7IP2Q5U623 682 aa19.29■□□□□ 0.68
COL7A1-206ENST00000466591 SPATA31D4Q6ZUB0 917 aa19.29■□□□□ 0.68
COL7A1-206ENST00000466591 DRC1Q96MC2 740 aa19.29■□□□□ 0.68
COL7A1-206ENST00000466591 TCHPQ9BT92 498 aa19.29■□□□□ 0.68
COL7A1-206ENST00000466591 PHLPP2Q6ZVD8 1323 aa19.28■□□□□ 0.68
COL7A1-206ENST00000466591 LILRB3O75022 631 aa19.28■□□□□ 0.68
COL7A1-206ENST00000466591 RFX1P22670 979 aa19.28■□□□□ 0.68
COL7A1-206ENST00000466591 HOXD11P31277 338 aaPredicted RBP19.28■□□□□ 0.68
COL7A1-206ENST00000466591 PEX3P56589 373 aa19.28■□□□□ 0.68
COL7A1-206ENST00000466591 NHLH1Q02575 133 aa19.28■□□□□ 0.68
COL7A1-206ENST00000466591 ELAVL2Q12926 359 aaKnown RBP19.28■□□□□ 0.68
COL7A1-206ENST00000466591 RILPL1Q5EBL4 403 aa19.28■□□□□ 0.68
COL7A1-206ENST00000466591 LIN9Q5TKA1 542 aa19.28■□□□□ 0.68
COL7A1-206ENST00000466591 FAM171A1Q5VUB5 890 aa19.28■□□□□ 0.68
COL7A1-206ENST00000466591 KIAA0319Q5VV43 1072 aa19.28■□□□□ 0.68
COL7A1-206ENST00000466591 SMG7Q92540 1137 aaKnown RBP19.28■□□□□ 0.68
COL7A1-206ENST00000466591 GPR62Q9BZJ7 368 aa19.28■□□□□ 0.68
COL7A1-206ENST00000466591 KMT5AQ9NQR1 393 aa19.28■□□□□ 0.68
COL7A1-206ENST00000466591 FBXL21Q9UKT6 434 aa19.28■□□□□ 0.68
COL7A1-206ENST00000466591 USP20Q9Y2K6 914 aa19.28■□□□□ 0.68
COL7A1-206ENST00000466591 E9PMD0 336 aa19.27■□□□□ 0.68
COL7A1-206ENST00000466591 BRD1O95696 1058 aa19.27■□□□□ 0.68
COL7A1-206ENST00000466591 ZNF568Q3ZCX4 644 aa19.27■□□□□ 0.68
COL7A1-206ENST00000466591 PDXDC1Q6P996 788 aa19.27■□□□□ 0.68
COL7A1-206ENST00000466591 RASSF8Q8NHQ8 419 aa19.27■□□□□ 0.68
COL7A1-206ENST00000466591 KIF2CQ99661 725 aa19.27■□□□□ 0.68
COL7A1-206ENST00000466591 TTPALQ9BTX7 342 aa19.27■□□□□ 0.68
COL7A1-206ENST00000466591 CCDC94Q9BW85 323 aaPredicted RBP19.27■□□□□ 0.68
COL7A1-206ENST00000466591 PLEKHA4Q9H4M7 779 aa19.27■□□□□ 0.68
COL7A1-206ENST00000466591 RXFP1Q9HBX9 757 aa19.27■□□□□ 0.68
COL7A1-206ENST00000466591 TOPORSQ9NS56 1045 aaPredicted RBP19.27■□□□□ 0.68
COL7A1-206ENST00000466591 CACNG4Q9UBN1 327 aa19.27■□□□□ 0.68
COL7A1-206ENST00000466591 DAXXQ9UER7 740 aaPredicted RBP19.27■□□□□ 0.68
COL7A1-206ENST00000466591 SMC3Q9UQE7 1217 aa19.27■□□□□ 0.68
COL7A1-206ENST00000466591 PP2D1A8MPX8 630 aa19.26■□□□□ 0.67
COL7A1-206ENST00000466591 HARSP12081 509 aaKnown RBP19.26■□□□□ 0.67
COL7A1-206ENST00000466591 RPL17P18621 184 aaKnown RBP19.26■□□□□ 0.67
COL7A1-206ENST00000466591 GJB2P29033 226 aa19.26■□□□□ 0.67
COL7A1-206ENST00000466591 PRPHP41219 470 aa19.26■□□□□ 0.67
COL7A1-206ENST00000466591 MATR3P43243 847 aaKnown RBP eCLIP19.26■□□□□ 0.67
COL7A1-206ENST00000466591 STRN3Q13033 797 aa19.26■□□□□ 0.67
COL7A1-206ENST00000466591 ECM1Q16610 540 aa19.26■□□□□ 0.67
COL7A1-206ENST00000466591 GLRA4Q5JXX5 417 aa19.26■□□□□ 0.67
COL7A1-206ENST00000466591 PRSS55Q6UWB4 352 aaPredicted RBP19.26■□□□□ 0.67
COL7A1-206ENST00000466591 CYP26C1Q6V0L0 522 aa19.26■□□□□ 0.67
COL7A1-206ENST00000466591 IGSF22Q8N9C0 903 aa19.26■□□□□ 0.67
COL7A1-206ENST00000466591 GSTCDQ8NEC7 633 aa19.26■□□□□ 0.67
COL7A1-206ENST00000466591 CMASQ8NFW8 434 aaPredicted RBP19.26■□□□□ 0.67
COL7A1-206ENST00000466591 ASIC4Q96FT7 647 aa19.26■□□□□ 0.67
COL7A1-206ENST00000466591 MRPL4Q9BYD3 311 aaKnown RBP19.26■□□□□ 0.67
COL7A1-206ENST00000466591 CCDC113Q9H0I3 377 aa19.26■□□□□ 0.67
COL7A1-206ENST00000466591 IRF2BPLQ9H1B7 796 aa19.26■□□□□ 0.67
COL7A1-206ENST00000466591 CHST7Q9NS84 486 aa19.26■□□□□ 0.67
COL7A1-206ENST00000466591 FNIP2Q9P278 1114 aa19.26■□□□□ 0.67
COL7A1-206ENST00000466591 TTLL13PA6NNM8 815 aa19.25■□□□□ 0.67
COL7A1-206ENST00000466591 TGM5O43548 720 aa19.25■□□□□ 0.67
COL7A1-206ENST00000466591 HIP1RO75146 1068 aa19.25■□□□□ 0.67
COL7A1-206ENST00000466591 RFPL2O75678 378 aa19.25■□□□□ 0.67
COL7A1-206ENST00000466591 KIF4AO95239 1232 aa19.25■□□□□ 0.67
COL7A1-206ENST00000466591 MCM2P49736 904 aa19.25■□□□□ 0.67
COL7A1-206ENST00000466591 MRE11P49959 708 aa19.25■□□□□ 0.67
COL7A1-206ENST00000466591 TOB1P50616 345 aaPredicted RBP19.25■□□□□ 0.67
COL7A1-206ENST00000466591 SMTNP53814 917 aa19.25■□□□□ 0.67
COL7A1-206ENST00000466591 OSTNP61366 133 aa19.25■□□□□ 0.67
COL7A1-206ENST00000466591 PSMD5Q16401 504 aa19.25■□□□□ 0.67
COL7A1-206ENST00000466591 EEF1DP3Q658K8 133 aa19.25■□□□□ 0.67
COL7A1-206ENST00000466591 GET4Q7L5D6 327 aaPredicted RBP19.25■□□□□ 0.67
COL7A1-206ENST00000466591 C4orf32Q8N8J7 132 aa19.25■□□□□ 0.67
COL7A1-206ENST00000466591 HDAC7Q8WUI4 952 aa19.25■□□□□ 0.67
COL7A1-206ENST00000466591 TMX3Q96JJ7 454 aa19.25■□□□□ 0.67
COL7A1-206ENST00000466591 PAAF1Q9BRP4 392 aa19.25■□□□□ 0.67
COL7A1-206ENST00000466591 KCNG1Q9UIX4 513 aa19.25■□□□□ 0.67
COL7A1-206ENST00000466591 POLIQ9UNA4 740 aa19.25■□□□□ 0.67
COL7A1-206ENST00000466591 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.25■□□□□ 0.67
COL7A1-206ENST00000466591 CLUHO75153 1309 aa19.25■□□□□ 0.67
COL7A1-206ENST00000466591 TECTAO75443 2155 aa19.25■□□□□ 0.67
COL7A1-206ENST00000466591 VWA3AA6NCI4 1184 aa19.24■□□□□ 0.67
COL7A1-206ENST00000466591 STK25O00506 426 aa19.24■□□□□ 0.67
COL7A1-206ENST00000466591 TRAPPC3O43617 180 aa19.24■□□□□ 0.67
COL7A1-206ENST00000466591 B3GAT3O94766 335 aa19.24■□□□□ 0.67
COL7A1-206ENST00000466591 CDC25AP30304 524 aa19.24■□□□□ 0.67
COL7A1-206ENST00000466591 AVPR2P30518 371 aa19.24■□□□□ 0.67
COL7A1-206ENST00000466591 NPTX2P47972 431 aa19.24■□□□□ 0.67
COL7A1-206ENST00000466591 VCPP55072 806 aaKnown RBP19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms