RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 ZSWIM1Q9BR11 485 aa16.21■□□□□ 0.19
LDLR-202ENST00000455727 RAB17Q9H0T7 212 aa16.21■□□□□ 0.19
LDLR-202ENST00000455727 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.21■□□□□ 0.194e-7■■□□□ 11.6
LDLR-202ENST00000455727 UVRAGQ9P2Y5 699 aa16.21■□□□□ 0.19
LDLR-202ENST00000455727 GTF3C4Q9UKN8 822 aa16.21■□□□□ 0.19
LDLR-202ENST00000455727 TTI1O43156 1089 aa16.2■□□□□ 0.18
LDLR-202ENST00000455727 GGPS1O95749 300 aa16.2■□□□□ 0.18
LDLR-202ENST00000455727 KRT14P02533 472 aa16.2■□□□□ 0.18
LDLR-202ENST00000455727 MMEP08473 750 aa16.2■□□□□ 0.18
LDLR-202ENST00000455727 SP2Q02086 613 aa16.2■□□□□ 0.18
LDLR-202ENST00000455727 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.2■□□□□ 0.182e-7■□□□□ 10.3
LDLR-202ENST00000455727 TOPORSQ9NS56 1045 aaPredicted RBP16.2■□□□□ 0.18
LDLR-202ENST00000455727 GGA3Q9NZ52 723 aa16.2■□□□□ 0.18
LDLR-202ENST00000455727 POLR2AP24928 1970 aaKnown RBP16.2■□□□□ 0.18
LDLR-202ENST00000455727 PTPRFP10586 1907 aa16.2■□□□□ 0.18
LDLR-202ENST00000455727 FAM187AA6NFU0 413 aa16.2■□□□□ 0.18
LDLR-202ENST00000455727 PIGRP01833 764 aa16.2■□□□□ 0.18
LDLR-202ENST00000455727 PEX5P50542 639 aa16.2■□□□□ 0.18
LDLR-202ENST00000455727 DHX34Q14147 1143 aaKnown RBP16.2■□□□□ 0.18
LDLR-202ENST00000455727 EMC2Q15006 297 aa16.2■□□□□ 0.18
LDLR-202ENST00000455727 PSMD6Q15008 389 aa16.2■□□□□ 0.18
LDLR-202ENST00000455727 DDX42Q86XP3 938 aaKnown RBP eCLIP16.2■□□□□ 0.181e-7■■■□□ 15
LDLR-202ENST00000455727 CD101Q93033 1021 aa16.2■□□□□ 0.18
LDLR-202ENST00000455727 BICD1Q96G01 975 aa16.2■□□□□ 0.18
LDLR-202ENST00000455727 FAM213AQ9BRX8 229 aa16.2■□□□□ 0.18
LDLR-202ENST00000455727 DHX33Q9H6R0 707 aaKnown RBP16.2■□□□□ 0.18
LDLR-202ENST00000455727 NR2E1Q9Y466 385 aa16.2■□□□□ 0.18
LDLR-202ENST00000455727 IGKV6D-21A0A0A0MT36 114 aa16.19■□□□□ 0.18
LDLR-202ENST00000455727 DAPK3O43293 454 aa16.19■□□□□ 0.18
LDLR-202ENST00000455727 GRIN3BO60391 1043 aa16.19■□□□□ 0.18
LDLR-202ENST00000455727 DLATP10515 647 aaKnown RBP16.19■□□□□ 0.18
LDLR-202ENST00000455727 ATP4AP20648 1035 aa16.19■□□□□ 0.18
LDLR-202ENST00000455727 LIG4P49917 911 aa16.19■□□□□ 0.18
LDLR-202ENST00000455727 POLGP54098 1239 aaPredicted RBP16.19■□□□□ 0.18
LDLR-202ENST00000455727 SP4Q02446 784 aa16.19■□□□□ 0.18
LDLR-202ENST00000455727 MTMR3Q13615 1198 aa16.19■□□□□ 0.18
LDLR-202ENST00000455727 MTERF2Q49AM1 385 aa16.19■□□□□ 0.18
LDLR-202ENST00000455727 ACAD10Q6JQN1 1059 aa16.19■□□□□ 0.18
LDLR-202ENST00000455727 PSPC1Q8WXF1 523 aaKnown RBP16.19■□□□□ 0.18
LDLR-202ENST00000455727 NIFKQ9BYG3 293 aaKnown RBP16.19■□□□□ 0.18
LDLR-202ENST00000455727 PORCNQ9H237 461 aa16.19■□□□□ 0.18
LDLR-202ENST00000455727 ZNF302Q9NR11 478 aa16.19■□□□□ 0.18
LDLR-202ENST00000455727 TRPC6Q9Y210 931 aa16.19■□□□□ 0.18
LDLR-202ENST00000455727 DICER1Q9UPY3 1922 aaKnown RBP16.19■□□□□ 0.18
LDLR-202ENST00000455727 OATP04181 439 aa16.19■□□□□ 0.18
LDLR-202ENST00000455727 COMTP21964 271 aa16.19■□□□□ 0.18
LDLR-202ENST00000455727 HSD17B3P37058 310 aa16.19■□□□□ 0.18
LDLR-202ENST00000455727 NAMPTP43490 491 aa16.19■□□□□ 0.18
LDLR-202ENST00000455727 IRAK1P51617 712 aa16.19■□□□□ 0.18
LDLR-202ENST00000455727 DRG2P55039 364 aaKnown RBP16.19■□□□□ 0.18
LDLR-202ENST00000455727 STRN3Q13033 797 aa16.19■□□□□ 0.18
LDLR-202ENST00000455727 EFCAB13Q8IY85 973 aa16.19■□□□□ 0.18
LDLR-202ENST00000455727 TATDN2Q93075 761 aa16.19■□□□□ 0.18
LDLR-202ENST00000455727 SGIP1Q9BQI5 828 aa16.19■□□□□ 0.18
LDLR-202ENST00000455727 CAPS2Q9BXY5 557 aa16.19■□□□□ 0.18
LDLR-202ENST00000455727 NEUROG2Q9H2A3 272 aa16.19■□□□□ 0.18
LDLR-202ENST00000455727 FBXO40Q9UH90 709 aa16.19■□□□□ 0.18
LDLR-202ENST00000455727 PLAAQ9Y263 795 aa16.19■□□□□ 0.18
LDLR-202ENST00000455727 A0A0G2JMZ2 1700 aa16.18■□□□□ 0.18
LDLR-202ENST00000455727 PPFIA4O75335 1185 aa16.18■□□□□ 0.18
LDLR-202ENST00000455727 USP2O75604 605 aaPredicted RBP16.18■□□□□ 0.18
LDLR-202ENST00000455727 ARL2P36404 184 aa16.18■□□□□ 0.18
LDLR-202ENST00000455727 DR1Q01658 176 aa16.18■□□□□ 0.18
LDLR-202ENST00000455727 MESDQ14696 234 aa16.18■□□□□ 0.18
LDLR-202ENST00000455727 ZACNQ401N2 412 aa16.18■□□□□ 0.18
LDLR-202ENST00000455727 SPDYCQ5MJ68 293 aa16.18■□□□□ 0.18
LDLR-202ENST00000455727 SLFN12LQ6IEE8 588 aa16.18■□□□□ 0.18
LDLR-202ENST00000455727 LBX2Q6XYB7 198 aa16.18■□□□□ 0.18
LDLR-202ENST00000455727 CYFIP1Q7L576 1253 aa16.18■□□□□ 0.18
LDLR-202ENST00000455727 ZNF677Q86XU0 584 aa16.18■□□□□ 0.18
LDLR-202ENST00000455727 CCDC125Q86Z20 511 aa16.18■□□□□ 0.18
LDLR-202ENST00000455727 GPC2Q8N158 579 aa16.18■□□□□ 0.18
LDLR-202ENST00000455727 ZNF564Q8TBZ8 553 aaPredicted RBP16.18■□□□□ 0.18
LDLR-202ENST00000455727 ZNF516Q92618 1163 aa16.18■□□□□ 0.18
LDLR-202ENST00000455727 NUP85Q9BW27 656 aa16.18■□□□□ 0.18
LDLR-202ENST00000455727 CELF4Q9BZC1 486 aaKnown RBP16.18■□□□□ 0.18
LDLR-202ENST00000455727 ACP6Q9NPH0 428 aa16.18■□□□□ 0.18
LDLR-202ENST00000455727 HMGB1P1B2RPK0 211 aaPredicted RBP16.18■□□□□ 0.18
LDLR-202ENST00000455727 H0YGN5 161 aa16.18■□□□□ 0.18
LDLR-202ENST00000455727 CTNNA2P26232 953 aa16.18■□□□□ 0.18
LDLR-202ENST00000455727 HIRAP54198 1017 aaPredicted RBP16.18■□□□□ 0.18
LDLR-202ENST00000455727 ZNF211Q13398 564 aaPredicted RBP16.18■□□□□ 0.18
LDLR-202ENST00000455727 DUPD1Q68J44 220 aa16.18■□□□□ 0.18
LDLR-202ENST00000455727 ANKRD35Q8N283 1001 aa16.18■□□□□ 0.18
LDLR-202ENST00000455727 DHX38Q92620 1227 aaKnown RBP16.18■□□□□ 0.18
LDLR-202ENST00000455727 KRT35Q92764 455 aa16.18■□□□□ 0.18
LDLR-202ENST00000455727 ERP44Q9BS26 406 aa16.18■□□□□ 0.18
LDLR-202ENST00000455727 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.18■□□□□ 0.182e-6■■■■■ 72.5
LDLR-202ENST00000455727 C1orf112Q9NSG2 853 aa16.18■□□□□ 0.18
LDLR-202ENST00000455727 PCDHA3Q9Y5H8 950 aa16.18■□□□□ 0.18
LDLR-202ENST00000455727 NFS1Q9Y697 457 aa16.18■□□□□ 0.18
LDLR-202ENST00000455727 LDHAP00338 332 aaKnown RBP16.17■□□□□ 0.18
LDLR-202ENST00000455727 CHRNA3P32297 505 aa16.17■□□□□ 0.18
LDLR-202ENST00000455727 CTNNA1P35221 906 aaKnown RBP16.17■□□□□ 0.18
LDLR-202ENST00000455727 UAP1Q16222 522 aaPredicted RBP16.17■□□□□ 0.18
LDLR-202ENST00000455727 CLEC16AQ2KHT3 1053 aa16.17■□□□□ 0.18
LDLR-202ENST00000455727 KDM7AQ6ZMT4 941 aa16.17■□□□□ 0.18
LDLR-202ENST00000455727 RIOX2Q8IUF8 465 aa16.17■□□□□ 0.18
LDLR-202ENST00000455727 PROCA1Q8NCQ7 364 aaPredicted RBP16.17■□□□□ 0.18
LDLR-202ENST00000455727 ZNF653Q96CK0 615 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms