RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 PLS3P13797 630 aa23.32■■□□□ 1.32
HMGB3-205ENST00000455596 KLRC2P26717 231 aa23.32■■□□□ 1.32
HMGB3-205ENST00000455596 SMTNP53814 917 aa23.32■■□□□ 1.32
HMGB3-205ENST00000455596 CBX2Q14781 532 aaPredicted RBP23.32■■□□□ 1.32
HMGB3-205ENST00000455596 CES5AQ6NT32 575 aa23.32■■□□□ 1.32
HMGB3-205ENST00000455596 SPIRE2Q8WWL2 714 aa23.32■■□□□ 1.32
HMGB3-205ENST00000455596 ADAM28Q9UKQ2 775 aa23.32■■□□□ 1.32
HMGB3-205ENST00000455596 CLIC4Q9Y696 253 aa23.32■■□□□ 1.32
HMGB3-205ENST00000455596 C2orf16Q68DN1 1984 aa23.31■■□□□ 1.32
HMGB3-205ENST00000455596 F8W810 466 aa23.31■■□□□ 1.32
HMGB3-205ENST00000455596 C2CD2LO14523 706 aa23.31■■□□□ 1.32
HMGB3-205ENST00000455596 LILRB3O75022 631 aa23.31■■□□□ 1.32
HMGB3-205ENST00000455596 CNPP09543 421 aaKnown RBP23.31■■□□□ 1.32
HMGB3-205ENST00000455596 EPCAMP16422 314 aa23.31■■□□□ 1.32
HMGB3-205ENST00000455596 GLUD2P49448 558 aa23.31■■□□□ 1.32
HMGB3-205ENST00000455596 ITIH3Q06033 890 aa23.31■■□□□ 1.32
HMGB3-205ENST00000455596 ZNF568Q3ZCX4 644 aa23.31■■□□□ 1.32
HMGB3-205ENST00000455596 FUT10Q6P4F1 479 aa23.31■■□□□ 1.32
HMGB3-205ENST00000455596 TAS1R3Q7RTX0 852 aa23.31■■□□□ 1.32
HMGB3-205ENST00000455596 TAS1R1Q7RTX1 841 aa23.31■■□□□ 1.32
HMGB3-205ENST00000455596 LOC730098B7Z3J9 87 aa23.3■■□□□ 1.32
HMGB3-205ENST00000455596 DCXO43602 365 aa23.3■■□□□ 1.32
HMGB3-205ENST00000455596 STRN3Q13033 797 aa23.3■■□□□ 1.32
HMGB3-205ENST00000455596 HSP90AA2PQ14568 343 aaPredicted RBP23.3■■□□□ 1.32
HMGB3-205ENST00000455596 KARSQ15046 597 aaKnown RBP23.3■■□□□ 1.32
HMGB3-205ENST00000455596 PTPAQ15257 358 aa23.3■■□□□ 1.32
HMGB3-205ENST00000455596 KIAA1841Q6NSI8 718 aa23.3■■□□□ 1.32
HMGB3-205ENST00000455596 RABGGTAQ92696 567 aa23.3■■□□□ 1.32
HMGB3-205ENST00000455596 SNX21Q969T3 373 aa23.3■■□□□ 1.32
HMGB3-205ENST00000455596 CCDC94Q9BW85 323 aaPredicted RBP23.3■■□□□ 1.32
HMGB3-205ENST00000455596 TARS2Q9BW92 718 aaKnown RBP23.3■■□□□ 1.32
HMGB3-205ENST00000455596 CCSER1Q9C0I3 900 aa23.3■■□□□ 1.32
HMGB3-205ENST00000455596 CDT1Q9H211 546 aa23.3■■□□□ 1.32
HMGB3-205ENST00000455596 ADAM7Q9H2U9 754 aa23.3■■□□□ 1.32
HMGB3-205ENST00000455596 PTPRHQ9HD43 1115 aa23.3■■□□□ 1.32
HMGB3-205ENST00000455596 LARSQ9P2J5 1176 aaKnown RBP23.3■■□□□ 1.32
HMGB3-205ENST00000455596 CACNG4Q9UBN1 327 aa23.3■■□□□ 1.32
HMGB3-205ENST00000455596 ODF2LQ9ULJ1 636 aa23.3■■□□□ 1.32
HMGB3-205ENST00000455596 MTMR6Q9Y217 621 aa23.3■■□□□ 1.32
HMGB3-205ENST00000455596 GTF3C3Q9Y5Q9 886 aa23.3■■□□□ 1.32
HMGB3-205ENST00000455596 DENND4AQ7Z401 1863 aa23.3■■□□□ 1.32
HMGB3-205ENST00000455596 VWA8A3KMH1 1905 aa23.29■■□□□ 1.32
HMGB3-205ENST00000455596 NPHP3-ACAD11A0A0J9YXS1 232 aa23.29■■□□□ 1.32
HMGB3-205ENST00000455596 CASTOR2A6NHX0 329 aa23.29■■□□□ 1.32
HMGB3-205ENST00000455596 TADA2AO75478 443 aa23.29■■□□□ 1.32
HMGB3-205ENST00000455596 PLCG1P19174 1290 aa23.29■■□□□ 1.32
HMGB3-205ENST00000455596 GRM5P41594 1212 aa23.29■■□□□ 1.32
HMGB3-205ENST00000455596 CLCN4P51793 760 aa23.29■■□□□ 1.32
HMGB3-205ENST00000455596 DSG1Q02413 1049 aa23.29■■□□□ 1.32
HMGB3-205ENST00000455596 CACNB1Q02641 598 aaPredicted RBP23.29■■□□□ 1.32
HMGB3-205ENST00000455596 DHX8Q14562 1220 aaKnown RBP23.29■■□□□ 1.32
HMGB3-205ENST00000455596 ARSHQ5FYA8 562 aa23.29■■□□□ 1.32
HMGB3-205ENST00000455596 TMEM31Q5JXX7 168 aa23.29■■□□□ 1.32
HMGB3-205ENST00000455596 KIAA0319Q5VV43 1072 aa23.29■■□□□ 1.32
HMGB3-205ENST00000455596 FAM173BQ6P4H8 233 aa23.29■■□□□ 1.32
HMGB3-205ENST00000455596 GPBP1Q86WP2 473 aa23.29■■□□□ 1.32
HMGB3-205ENST00000455596 RNF135Q8IUD6 432 aa23.29■■□□□ 1.32
HMGB3-205ENST00000455596 RPGRIP1Q96KN7 1286 aa23.29■■□□□ 1.32
HMGB3-205ENST00000455596 PAAF1Q9BRP4 392 aa23.29■■□□□ 1.32
HMGB3-205ENST00000455596 GPR62Q9BZJ7 368 aa23.29■■□□□ 1.32
HMGB3-205ENST00000455596 CXCL16Q9H2A7 254 aa23.29■■□□□ 1.32
HMGB3-205ENST00000455596 ZSCAN16Q9H4T2 348 aaPredicted RBP23.29■■□□□ 1.32
HMGB3-205ENST00000455596 BLOC1S4Q9NUP1 217 aa23.29■■□□□ 1.32
HMGB3-205ENST00000455596 H0YCG3 227 aa23.28■■□□□ 1.32
HMGB3-205ENST00000455596 STX6O43752 255 aa23.28■■□□□ 1.32
HMGB3-205ENST00000455596 GPR37L1O60883 481 aa23.28■■□□□ 1.32
HMGB3-205ENST00000455596 ADH1AP07327 375 aa23.28■■□□□ 1.32
HMGB3-205ENST00000455596 MARCKSP29966 332 aaPredicted RBP23.28■■□□□ 1.32
HMGB3-205ENST00000455596 YARSP54577 528 aaKnown RBP23.28■■□□□ 1.32
HMGB3-205ENST00000455596 NAB2Q15742 525 aa23.28■■□□□ 1.32
HMGB3-205ENST00000455596 USP41Q3LFD5 358 aa23.28■■□□□ 1.32
HMGB3-205ENST00000455596 RARS2Q5T160 578 aaKnown RBP23.28■■□□□ 1.32
HMGB3-205ENST00000455596 MPZL3Q6UWV2 235 aa23.28■■□□□ 1.32
HMGB3-205ENST00000455596 ZBTB33Q86T24 672 aa23.28■■□□□ 1.32
HMGB3-205ENST00000455596 TMEM161BQ8NDZ6 487 aa23.28■■□□□ 1.32
HMGB3-205ENST00000455596 LRRC15Q8TF66 581 aa23.28■■□□□ 1.32
HMGB3-205ENST00000455596 RAD54LQ92698 747 aa23.28■■□□□ 1.32
HMGB3-205ENST00000455596 NECTIN4Q96NY8 510 aa23.28■■□□□ 1.32
HMGB3-205ENST00000455596 TCHPQ9BT92 498 aa23.28■■□□□ 1.32
HMGB3-205ENST00000455596 TOPORSQ9NS56 1045 aaPredicted RBP23.28■■□□□ 1.32
HMGB3-205ENST00000455596 CHST7Q9NS84 486 aa23.28■■□□□ 1.32
HMGB3-205ENST00000455596 C5orf42Q9H799 3197 aa23.28■■□□□ 1.32
HMGB3-205ENST00000455596 SPDYE4A6NLX3 237 aa23.27■■□□□ 1.32
HMGB3-205ENST00000455596 MAPTP10636 758 aaKnown RBP23.27■■□□□ 1.32
HMGB3-205ENST00000455596 MCF2P10911 925 aa23.27■■□□□ 1.32
HMGB3-205ENST00000455596 PROZP22891 400 aa23.27■■□□□ 1.32
HMGB3-205ENST00000455596 MTHFRP42898 656 aa23.27■■□□□ 1.32
HMGB3-205ENST00000455596 MCM6Q14566 821 aa23.27■■□□□ 1.32
HMGB3-205ENST00000455596 C12orf76Q8N812 135 aaPredicted RBP23.27■■□□□ 1.32
HMGB3-205ENST00000455596 CEP120Q8N960 986 aa23.27■■□□□ 1.32
HMGB3-205ENST00000455596 LARP4BQ92615 738 aaKnown RBP23.27■■□□□ 1.32
HMGB3-205ENST00000455596 FBXL18Q96ME1 805 aa23.27■■□□□ 1.32
HMGB3-205ENST00000455596 RIPOR3Q96MK2 946 aa23.27■■□□□ 1.32
HMGB3-205ENST00000455596 REEP2Q9BRK0 252 aa23.27■■□□□ 1.32
HMGB3-205ENST00000455596 LRFN3Q9BTN0 628 aa23.27■■□□□ 1.32
HMGB3-205ENST00000455596 SFXN1Q9H9B4 322 aa23.27■■□□□ 1.32
HMGB3-205ENST00000455596 RXFP1Q9HBX9 757 aa23.27■■□□□ 1.32
HMGB3-205ENST00000455596 FBXO2Q9UK22 296 aaPredicted RBP23.27■■□□□ 1.32
HMGB3-205ENST00000455596 SRPRBQ9Y5M8 271 aaKnown RBP23.27■■□□□ 1.32
HMGB3-205ENST00000455596 SF3B1O75533 1304 aaKnown RBP eCLIP23.27■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms