RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 HELQQ8TDG4 1101 aa14.67□□□□□ -0.06
COL6A3-207ENST00000433762 PARD3BQ8TEW8 1205 aa14.67□□□□□ -0.06
COL6A3-207ENST00000433762 SEC16BQ96JE7 1060 aa14.67□□□□□ -0.06
COL6A3-207ENST00000433762 KDM4CQ9H3R0 1056 aa14.67□□□□□ -0.06
COL6A3-207ENST00000433762 PCIF1Q9H4Z3 704 aa14.67□□□□□ -0.06
COL6A3-207ENST00000433762 COL20A1Q9P218 1284 aa14.67□□□□□ -0.06
COL6A3-207ENST00000433762 TCEAL9Q9UHQ7 104 aa14.67□□□□□ -0.06
COL6A3-207ENST00000433762 TBX20Q9UMR3 447 aa14.67□□□□□ -0.06
COL6A3-207ENST00000433762 H0YCG3 227 aa14.66□□□□□ -0.06
COL6A3-207ENST00000433762 MAFGO15525 162 aa14.66□□□□□ -0.06
COL6A3-207ENST00000433762 SGPL1O95470 568 aa14.66□□□□□ -0.06
COL6A3-207ENST00000433762 CYP11B1P15538 503 aa14.66□□□□□ -0.06
COL6A3-207ENST00000433762 DRD4P21917 467 aa14.66□□□□□ -0.06
COL6A3-207ENST00000433762 HNRNPH1P31943 449 aaKnown RBP14.66□□□□□ -0.06
COL6A3-207ENST00000433762 SLC1A1P43005 524 aa14.66□□□□□ -0.06
COL6A3-207ENST00000433762 SIX1Q15475 284 aaPredicted RBP14.66□□□□□ -0.06
COL6A3-207ENST00000433762 ACAD10Q6JQN1 1059 aa14.66□□□□□ -0.06
COL6A3-207ENST00000433762 RTKN2Q8IZC4 609 aa14.66□□□□□ -0.06
COL6A3-207ENST00000433762 TMEM161BQ8NDZ6 487 aa14.66□□□□□ -0.06
COL6A3-207ENST00000433762 FBXL13Q8NEE6 735 aa14.66□□□□□ -0.06
COL6A3-207ENST00000433762 SYTL5Q8TDW5 730 aaPredicted RBP14.66□□□□□ -0.06
COL6A3-207ENST00000433762 C18orf8Q96DM3 657 aa14.66□□□□□ -0.06
COL6A3-207ENST00000433762 NUP85Q9BW27 656 aa14.66□□□□□ -0.06
COL6A3-207ENST00000433762 SNX24Q9Y343 169 aa14.66□□□□□ -0.06
COL6A3-207ENST00000433762 CAND2O75155 1236 aa14.66□□□□□ -0.06
COL6A3-207ENST00000433762 ADRB2P07550 413 aa14.66□□□□□ -0.06
COL6A3-207ENST00000433762 GARTP22102 1010 aa14.66□□□□□ -0.06
COL6A3-207ENST00000433762 MRPS9P82933 396 aaKnown RBP14.66□□□□□ -0.06
COL6A3-207ENST00000433762 IFT88Q13099 833 aa14.66□□□□□ -0.06
COL6A3-207ENST00000433762 DMP1Q13316 513 aaPredicted RBP14.66□□□□□ -0.06
COL6A3-207ENST00000433762 MESDQ14696 234 aa14.66□□□□□ -0.06
COL6A3-207ENST00000433762 ZNF746Q6NUN9 644 aaPredicted RBP14.66□□□□□ -0.06
COL6A3-207ENST00000433762 TAOK1Q7L7X3 1001 aa14.66□□□□□ -0.06
COL6A3-207ENST00000433762 PSPC1Q8WXF1 523 aaKnown RBP14.66□□□□□ -0.06
COL6A3-207ENST00000433762 RNF25Q96BH1 459 aaPredicted RBP14.66□□□□□ -0.06
COL6A3-207ENST00000433762 ZBED3Q96IU2 234 aaPredicted RBP14.66□□□□□ -0.06
COL6A3-207ENST00000433762 TRIM31Q9BZY9 425 aa14.66□□□□□ -0.06
COL6A3-207ENST00000433762 KIAA1683Q9H0B3 1180 aa14.66□□□□□ -0.06
COL6A3-207ENST00000433762 SLC38A10Q9HBR0 1119 aa14.66□□□□□ -0.06
COL6A3-207ENST00000433762 FER1L6Q2WGJ9 1857 aa14.65□□□□□ -0.06
COL6A3-207ENST00000433762 H0YHG0 523 aa14.65□□□□□ -0.06
COL6A3-207ENST00000433762 RGS16O15492 202 aaPredicted RBP14.65□□□□□ -0.06
COL6A3-207ENST00000433762 SPOPO43791 374 aa14.65□□□□□ -0.06
COL6A3-207ENST00000433762 ECEL1O95672 775 aa14.65□□□□□ -0.06
COL6A3-207ENST00000433762 ITIH4Q14624 930 aa14.65□□□□□ -0.06
COL6A3-207ENST00000433762 TTC27Q6P3X3 843 aa14.65□□□□□ -0.06
COL6A3-207ENST00000433762 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.65□□□□□ -0.06
COL6A3-207ENST00000433762 DDX1Q92499 740 aaKnown RBP14.65□□□□□ -0.06
COL6A3-207ENST00000433762 ZNF653Q96CK0 615 aa14.65□□□□□ -0.06
COL6A3-207ENST00000433762 AGBL1Q96MI9 1066 aa14.65□□□□□ -0.06
COL6A3-207ENST00000433762 ZNF317Q96PQ6 595 aaPredicted RBP14.65□□□□□ -0.06
COL6A3-207ENST00000433762 HOMER3Q9NSC5 361 aa14.65□□□□□ -0.06
COL6A3-207ENST00000433762 FBXO28Q9NVF7 368 aa14.65□□□□□ -0.06
COL6A3-207ENST00000433762 SIP14410 1827 aa14.65□□□□□ -0.06
COL6A3-207ENST00000433762 DDX39AO00148 427 aaKnown RBP14.65□□□□□ -0.07
COL6A3-207ENST00000433762 RIPK2O43353 540 aa14.65□□□□□ -0.07
COL6A3-207ENST00000433762 PYGMP11217 842 aa14.65□□□□□ -0.07
COL6A3-207ENST00000433762 TMOD1P28289 359 aa14.65□□□□□ -0.07
COL6A3-207ENST00000433762 ATP5DP30049 168 aa14.65□□□□□ -0.07
COL6A3-207ENST00000433762 PEX3P56589 373 aa14.65□□□□□ -0.07
COL6A3-207ENST00000433762 BPIFB4P59827 614 aa14.65□□□□□ -0.07
COL6A3-207ENST00000433762 PGM5Q15124 567 aa14.65□□□□□ -0.07
COL6A3-207ENST00000433762 CLEC16AQ2KHT3 1053 aa14.65□□□□□ -0.07
COL6A3-207ENST00000433762 PPM1KQ8N3J5 372 aa14.65□□□□□ -0.07
COL6A3-207ENST00000433762 PROCA1Q8NCQ7 364 aaPredicted RBP14.65□□□□□ -0.07
COL6A3-207ENST00000433762 IL31RAQ8NI17 732 aa14.65□□□□□ -0.07
COL6A3-207ENST00000433762 SLC16A10Q8TF71 515 aa14.65□□□□□ -0.07
COL6A3-207ENST00000433762 GRK7Q8WTQ7 553 aa14.65□□□□□ -0.07
COL6A3-207ENST00000433762 KIAA1586Q9HCI6 787 aa14.65□□□□□ -0.07
COL6A3-207ENST00000433762 NFIBO00712 420 aa14.64□□□□□ -0.07
COL6A3-207ENST00000433762 BACH1O14867 736 aa14.64□□□□□ -0.07
COL6A3-207ENST00000433762 CYP26A1O43174 497 aa14.64□□□□□ -0.07
COL6A3-207ENST00000433762 GSTA1P08263 222 aa14.64□□□□□ -0.07
COL6A3-207ENST00000433762 ITIH2P19823 946 aa14.64□□□□□ -0.07
COL6A3-207ENST00000433762 CNGA1P29973 690 aa14.64□□□□□ -0.07
COL6A3-207ENST00000433762 MARCKSL1P49006 195 aa14.64□□□□□ -0.07
COL6A3-207ENST00000433762 CALCOCO2Q13137 446 aa14.64□□□□□ -0.07
COL6A3-207ENST00000433762 SLC29A2Q14542 456 aa14.64□□□□□ -0.07
COL6A3-207ENST00000433762 OTUD6AQ7L8S5 288 aa14.64□□□□□ -0.07
COL6A3-207ENST00000433762 CCDC50Q8IVM0 306 aa14.64□□□□□ -0.07
COL6A3-207ENST00000433762 CCDC13Q8IYE1 715 aa14.64□□□□□ -0.07
COL6A3-207ENST00000433762 CCDC105Q8IYK2 499 aa14.64□□□□□ -0.07
COL6A3-207ENST00000433762 ZDHHC14Q8IZN3 488 aa14.64□□□□□ -0.07
COL6A3-207ENST00000433762 ATXN2LQ8WWM7 1075 aaKnown RBP14.64□□□□□ -0.07
COL6A3-207ENST00000433762 RAB20Q9NX57 234 aa14.64□□□□□ -0.07
COL6A3-207ENST00000433762 CLRN2A0PK11 232 aa14.63□□□□□ -0.07
COL6A3-207ENST00000433762 SLC16A4O15374 487 aa14.63□□□□□ -0.07
COL6A3-207ENST00000433762 TCEA3O75764 348 aa14.63□□□□□ -0.07
COL6A3-207ENST00000433762 RASSF9O75901 435 aa14.63□□□□□ -0.07
COL6A3-207ENST00000433762 MMEP08473 750 aa14.63□□□□□ -0.07
COL6A3-207ENST00000433762 ADSSP30520 456 aa14.63□□□□□ -0.07
COL6A3-207ENST00000433762 CLDN10P78369 228 aa14.63□□□□□ -0.07
COL6A3-207ENST00000433762 SPP2Q13103 211 aa14.63□□□□□ -0.07
COL6A3-207ENST00000433762 BRDTQ58F21 947 aaPredicted RBP14.63□□□□□ -0.07
COL6A3-207ENST00000433762 RNF187Q5TA31 235 aaPredicted RBP14.63□□□□□ -0.07
COL6A3-207ENST00000433762 KCNV1Q6PIU1 500 aa14.63□□□□□ -0.07
COL6A3-207ENST00000433762 CEP128Q6ZU80 1094 aa14.63□□□□□ -0.07
COL6A3-207ENST00000433762 MIGA2Q7L4E1 593 aa14.63□□□□□ -0.07
COL6A3-207ENST00000433762 CPLX4Q7Z7G2 160 aa14.63□□□□□ -0.07
COL6A3-207ENST00000433762 SLC47A2Q86VL8 602 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms