RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 KIAA1586Q9HCI6 787 aa11.38□□□□□ -0.59
TCOF1-204ENST00000427724 A6NNZ2 444 aa11.38□□□□□ -0.59
TCOF1-204ENST00000427724 GOLGA8KD6RF30 607 aa11.38□□□□□ -0.59
TCOF1-204ENST00000427724 MYL1P05976 194 aa11.38□□□□□ -0.59
TCOF1-204ENST00000427724 PRMT2P55345 433 aa11.38□□□□□ -0.59
TCOF1-204ENST00000427724 SNCBQ16143 134 aa11.38□□□□□ -0.59
TCOF1-204ENST00000427724 TUBB8Q3ZCM7 444 aa11.38□□□□□ -0.59
TCOF1-204ENST00000427724 CYP2W1Q8TAV3 490 aa11.38□□□□□ -0.59
TCOF1-204ENST00000427724 RAD54LQ92698 747 aa11.38□□□□□ -0.59
TCOF1-204ENST00000427724 GAS2L1Q99501 681 aaPredicted RBP11.38□□□□□ -0.59
TCOF1-204ENST00000427724 TUFT1Q9NNX1 390 aa11.38□□□□□ -0.59
TCOF1-204ENST00000427724 CYP39A1Q9NYL5 469 aa11.38□□□□□ -0.59
TCOF1-204ENST00000427724 MRC1P22897 1456 aa11.38□□□□□ -0.59
TCOF1-204ENST00000427724 RGPD8O14715 1765 aaPredicted RBP11.38□□□□□ -0.59
TCOF1-204ENST00000427724 TLL1O43897 1013 aa11.38□□□□□ -0.59
TCOF1-204ENST00000427724 MOCS2O96007 188 aaPredicted RBP11.38□□□□□ -0.59
TCOF1-204ENST00000427724 CLTAP09496 248 aa11.38□□□□□ -0.59
TCOF1-204ENST00000427724 KRT71Q3SY84 523 aa11.38□□□□□ -0.59
TCOF1-204ENST00000427724 NUDT18Q6ZVK8 323 aa11.38□□□□□ -0.59
TCOF1-204ENST00000427724 PACS2Q86VP3 889 aa11.38□□□□□ -0.59
TCOF1-204ENST00000427724 SPATA2LQ8IUW3 424 aaPredicted RBP11.38□□□□□ -0.59
TCOF1-204ENST00000427724 KIFC3Q9BVG8 833 aa11.38□□□□□ -0.59
TCOF1-204ENST00000427724 SEPT10Q9P0V9 454 aa11.38□□□□□ -0.59
TCOF1-204ENST00000427724 NCK2O43639 380 aa11.37□□□□□ -0.59
TCOF1-204ENST00000427724 IFNB1P01574 187 aa11.37□□□□□ -0.59
TCOF1-204ENST00000427724 AFPP02771 609 aaKnown RBP11.37□□□□□ -0.59
TCOF1-204ENST00000427724 EVX2Q03828 476 aa11.37□□□□□ -0.59
TCOF1-204ENST00000427724 FAM133AQ8N9E0 248 aa11.37□□□□□ -0.59
TCOF1-204ENST00000427724 RNPC3Q96LT9 517 aaKnown RBP11.37□□□□□ -0.59
TCOF1-204ENST00000427724 DPH5Q9H2P9 285 aa11.37□□□□□ -0.59
TCOF1-204ENST00000427724 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.37□□□□□ -0.59
TCOF1-204ENST00000427724 ADAMTS1Q9UHI8 967 aa11.37□□□□□ -0.59
TCOF1-204ENST00000427724 STRIP2Q9ULQ0 834 aa11.37□□□□□ -0.59
TCOF1-204ENST00000427724 NPHP3-ACAD11A0A0J9YXS1 232 aa11.37□□□□□ -0.59
TCOF1-204ENST00000427724 A6NJR5 290 aa11.37□□□□□ -0.59
TCOF1-204ENST00000427724 POMCP01189 267 aa11.37□□□□□ -0.59
TCOF1-204ENST00000427724 ALDH2P05091 517 aa11.37□□□□□ -0.59
TCOF1-204ENST00000427724 H2AFZP0C0S5 128 aa11.37□□□□□ -0.59
TCOF1-204ENST00000427724 SKIP12755 728 aa11.37□□□□□ -0.59
TCOF1-204ENST00000427724 SMARCA1P28370 1054 aa11.37□□□□□ -0.59
TCOF1-204ENST00000427724 CTNNA1P35221 906 aaKnown RBP11.37□□□□□ -0.59
TCOF1-204ENST00000427724 NNMTP40261 264 aa11.37□□□□□ -0.59
TCOF1-204ENST00000427724 ALDH1A3P47895 512 aa11.37□□□□□ -0.59
TCOF1-204ENST00000427724 CALCOCO2Q13137 446 aa11.37□□□□□ -0.59
TCOF1-204ENST00000427724 HADHQ16836 314 aaKnown RBP11.37□□□□□ -0.59
TCOF1-204ENST00000427724 ACCSLQ4AC99 568 aa11.37□□□□□ -0.59
TCOF1-204ENST00000427724 H2AFVQ71UI9 128 aa11.37□□□□□ -0.59
TCOF1-204ENST00000427724 LRP10Q7Z4F1 713 aa11.37□□□□□ -0.59
TCOF1-204ENST00000427724 TMEM60Q9H2L4 133 aa11.37□□□□□ -0.59
TCOF1-204ENST00000427724 NGRNQ9NPE2 291 aaKnown RBP11.37□□□□□ -0.59
TCOF1-204ENST00000427724 RNF186Q9NXI6 227 aa11.37□□□□□ -0.59
TCOF1-204ENST00000427724 SAMD15Q9P1V8 674 aa11.37□□□□□ -0.59
TCOF1-204ENST00000427724 ATP2A1O14983 1001 aa11.37□□□□□ -0.59
TCOF1-204ENST00000427724 EPHB4P54760 987 aa11.37□□□□□ -0.59
TCOF1-204ENST00000427724 CORO7P57737 925 aa11.37□□□□□ -0.59
TCOF1-204ENST00000427724 ANKRD40Q6AI12 368 aa11.37□□□□□ -0.59
TCOF1-204ENST00000427724 ADSSL1Q8N142 457 aa11.37□□□□□ -0.59
TCOF1-204ENST00000427724 BBS5Q8N3I7 341 aa11.37□□□□□ -0.59
TCOF1-204ENST00000427724 PAWRQ96IZ0 340 aaKnown RBP11.37□□□□□ -0.59
TCOF1-204ENST00000427724 PDGFCQ9NRA1 345 aa11.37□□□□□ -0.59
TCOF1-204ENST00000427724 INTS13Q9NVM9 706 aa11.37□□□□□ -0.59
TCOF1-204ENST00000427724 PTCH2Q9Y6C5 1203 aa11.37□□□□□ -0.59
TCOF1-204ENST00000427724 CACNA1FO60840 1977 aa11.36□□□□□ -0.59
TCOF1-204ENST00000427724 LRRC53A6NM62 1247 aa11.36□□□□□ -0.59
TCOF1-204ENST00000427724 KRIT1O00522 736 aa11.36□□□□□ -0.59
TCOF1-204ENST00000427724 ITGA7Q13683 1181 aa11.36□□□□□ -0.59
TCOF1-204ENST00000427724 ZRSR2Q15696 482 aaKnown RBP11.36□□□□□ -0.59
TCOF1-204ENST00000427724 SEZ6Q53EL9 994 aa11.36□□□□□ -0.59
TCOF1-204ENST00000427724 AP1ARQ63HQ0 302 aa11.36□□□□□ -0.59
TCOF1-204ENST00000427724 APOL5Q9BWW9 433 aa11.36□□□□□ -0.59
TCOF1-204ENST00000427724 GPRC5CQ9NQ84 441 aa11.36□□□□□ -0.59
TCOF1-204ENST00000427724 CYP26B1Q9NR63 512 aa11.36□□□□□ -0.59
TCOF1-204ENST00000427724 UTP11Q9Y3A2 253 aaKnown RBP11.36□□□□□ -0.59
TCOF1-204ENST00000427724 XRN1Q8IZH2 1706 aaKnown RBP11.36□□□□□ -0.59
TCOF1-204ENST00000427724 AKAP12Q02952 1782 aa11.36□□□□□ -0.59
TCOF1-204ENST00000427724 ESYT3A0FGR9 886 aa11.36□□□□□ -0.59
TCOF1-204ENST00000427724 KLK7P49862 253 aa11.36□□□□□ -0.59
TCOF1-204ENST00000427724 CDO1Q16878 200 aa11.36□□□□□ -0.59
TCOF1-204ENST00000427724 CYP4A22Q5TCH4 519 aa11.36□□□□□ -0.59
TCOF1-204ENST00000427724 LBX2Q6XYB7 198 aa11.36□□□□□ -0.59
TCOF1-204ENST00000427724 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.36□□□□□ -0.59
TCOF1-204ENST00000427724 UNC45AQ9H3U1 944 aa11.36□□□□□ -0.59
TCOF1-204ENST00000427724 SLC38A7Q9NVC3 462 aa11.36□□□□□ -0.59
TCOF1-204ENST00000427724 GCNT4Q9P109 453 aa11.36□□□□□ -0.59
TCOF1-204ENST00000427724 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.36□□□□□ -0.59
TCOF1-204ENST00000427724 GON4LQ3T8J9 2241 aa11.36□□□□□ -0.59
TCOF1-204ENST00000427724 A0A087X0B3 334 aa11.36□□□□□ -0.59
TCOF1-204ENST00000427724 A0A0U1RQJ8 604 aa11.36□□□□□ -0.59
TCOF1-204ENST00000427724 TBX3O15119 743 aa11.36□□□□□ -0.59
TCOF1-204ENST00000427724 MED7O43513 233 aa11.36□□□□□ -0.59
TCOF1-204ENST00000427724 KLRC2P26717 231 aa11.36□□□□□ -0.59
TCOF1-204ENST00000427724 GFPT1Q06210 699 aaPredicted RBP11.36□□□□□ -0.59
TCOF1-204ENST00000427724 STK4Q13043 487 aa11.36□□□□□ -0.59
TCOF1-204ENST00000427724 CASC4Q6P4E1 433 aa11.36□□□□□ -0.59
TCOF1-204ENST00000427724 UNC13DQ70J99 1090 aa11.36□□□□□ -0.59
TCOF1-204ENST00000427724 INTS8Q75QN2 995 aaKnown RBP11.36□□□□□ -0.59
TCOF1-204ENST00000427724 ADAM2Q99965 735 aa11.36□□□□□ -0.59
TCOF1-204ENST00000427724 MFSD1Q9H3U5 465 aa11.36□□□□□ -0.59
TCOF1-204ENST00000427724 PSD3Q9NYI0 1048 aa11.36□□□□□ -0.59
TCOF1-204ENST00000427724 CAPN11Q9UMQ6 739 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms