RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 CABYRO75952 493 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 PGK1P00558 417 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 VTNP04004 478 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 HSPA6P17066 643 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 CCND3P30281 292 aaPredicted RBP6.47□□□□□ -1.37
HMGB3-202ENST00000419110 GRK4P32298 578 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 GTF2H1P32780 548 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 KRT9P35527 623 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 PIK3CAP42336 1068 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 FXR1P51114 621 aaKnown RBP eCLIP6.47□□□□□ -1.37
HMGB3-202ENST00000419110 NKX3-2P78367 333 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 HTRA3P83110 453 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 RBL2Q08999 1139 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 NCBP1Q09161 790 aaKnown RBP6.47□□□□□ -1.37
HMGB3-202ENST00000419110 TRIM32Q13049 653 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 RAPGEF1Q13905 1077 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 SURF1Q15526 300 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 KYAT1Q16773 422 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 FAM187BQ17R55 369 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 TDRD12Q587J7 1177 aaKnown RBP6.47□□□□□ -1.37
HMGB3-202ENST00000419110 CYP26C1Q6V0L0 522 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 CATSPER4Q7RTX7 472 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 SRGAP1Q7Z6B7 1085 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 CBWD2Q8IUF1 395 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 KAT2BQ92831 832 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 LRCH3Q96II8 777 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 FBXL18Q96ME1 805 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 SPAG5Q96R06 1193 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 PPP1R16BQ96T49 567 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 DNAJC7Q99615 494 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 CGRRF1Q99675 332 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 FAM213AQ9BRX8 229 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 TCHPQ9BT92 498 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 TARS2Q9BW92 718 aaKnown RBP6.47□□□□□ -1.37
HMGB3-202ENST00000419110 GCOM2Q9BZD3 368 aaPredicted RBP6.47□□□□□ -1.37
HMGB3-202ENST00000419110 IMPG2Q9BZV3 1241 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 INTS2Q9H0H0 1204 aaKnown RBP6.47□□□□□ -1.37
HMGB3-202ENST00000419110 IKZF4Q9H2S9 585 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 HMX1Q9NP08 348 aaPredicted RBP6.47□□□□□ -1.37
HMGB3-202ENST00000419110 PLCB1Q9NQ66 1216 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 C1orf112Q9NSG2 853 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 SETD4Q9NVD3 440 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 TSR3Q9UJK0 312 aaKnown RBP6.47□□□□□ -1.37
HMGB3-202ENST00000419110 CAPN11Q9UMQ6 739 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 NOD1Q9Y239 953 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 ARIH1Q9Y4X5 557 aaPredicted RBP6.47□□□□□ -1.37
HMGB3-202ENST00000419110 PTCH2Q9Y6C5 1203 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 STYXL1Q9Y6J8 313 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 MYH10P35580 1976 aa6.47□□□□□ -1.37
HMGB3-202ENST00000419110 A0A087WZ62 844 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 TTC26A0AVF1 554 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 GRXCR2A6NFK2 248 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 MOXD2PA6NHM9 499 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 TULP1O00294 542 aaPredicted RBP6.46□□□□□ -1.38
HMGB3-202ENST00000419110 ZSCAN12O43309 604 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 TSPAN1O60635 241 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 IL18RAPO95256 599 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 ASGR1P07306 291 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 GJB1P08034 283 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 TMEM191BP0C7N4 346 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 DLATP10515 647 aaKnown RBP6.46□□□□□ -1.38
HMGB3-202ENST00000419110 MCF2P10911 925 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 FECHP22830 423 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 ADSSP30520 456 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 HOXC8P31273 242 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 CYLC1P35663 651 aaPredicted RBP6.46□□□□□ -1.38
HMGB3-202ENST00000419110 KLK7P49862 253 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 AP3M2P53677 418 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 ADKP55263 362 aaKnown RBP6.46□□□□□ -1.38
HMGB3-202ENST00000419110 NLRP11P59045 1033 aaKnown RBP6.46□□□□□ -1.38
HMGB3-202ENST00000419110 MRPS6P82932 125 aaKnown RBP6.46□□□□□ -1.38
HMGB3-202ENST00000419110 PTPN11Q06124 597 aaPredicted RBP6.46□□□□□ -1.38
HMGB3-202ENST00000419110 MCL1Q07820 350 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 GOLGA8FQ08AF8 430 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 GOLGA8DPQ0D2H9 430 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 BIRC3Q13489 604 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 ARID5BQ14865 1188 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 PSMD6Q15008 389 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 ASIC2Q16515 512 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 KIZQ2M2Z5 673 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 SLC9C1Q4G0N8 1177 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 KRT39Q6A163 491 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 NOTUMQ6P988 496 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 PDXDC1Q6P996 788 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 TRIM65Q6PJ69 517 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 CXCL17Q6UXB2 119 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 TSHZ1Q6ZSZ6 1077 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 VPS36Q86VN1 386 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 SESTD1Q86VW0 696 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 TMTC1Q8IUR5 882 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 TXLNBQ8N3L3 684 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 RDH13Q8NBN7 331 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 OR8K1Q8NGG5 319 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 CPLX3Q8WVH0 158 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 VTI1AQ96AJ9 217 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 CCDC127Q96BQ5 260 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 BORCS6Q96GS4 357 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 FAM81BQ96LP2 452 aa6.46□□□□□ -1.38
HMGB3-202ENST00000419110 ZNF830Q96NB3 372 aaPredicted RBP6.46□□□□□ -1.38
HMGB3-202ENST00000419110 NT5C1BQ96P26 610 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms