RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 CDT1Q9H211 546 aa16.27■□□□□ 0.2
LIMS4-201ENST00000413601 PTPRHQ9HD43 1115 aa16.27■□□□□ 0.2
LIMS4-201ENST00000413601 MARCH5Q9NX47 278 aa16.27■□□□□ 0.2
LIMS4-201ENST00000413601 CLEC1BQ9P126 229 aa16.27■□□□□ 0.2
LIMS4-201ENST00000413601 BARX2Q9UMQ3 279 aaPredicted RBP16.27■□□□□ 0.2
LIMS4-201ENST00000413601 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.26■□□□□ 0.19
LIMS4-201ENST00000413601 PTGESO14684 152 aa16.26■□□□□ 0.19
LIMS4-201ENST00000413601 FAM13AO94988 1023 aa16.26■□□□□ 0.19
LIMS4-201ENST00000413601 CTSAP10619 480 aa16.26■□□□□ 0.19
LIMS4-201ENST00000413601 NCKAP1LP55160 1127 aa16.26■□□□□ 0.19
LIMS4-201ENST00000413601 BMS1Q14692 1282 aaKnown RBP16.26■□□□□ 0.19
LIMS4-201ENST00000413601 ZNF568Q3ZCX4 644 aa16.26■□□□□ 0.19
LIMS4-201ENST00000413601 LLGL2Q6P1M3 1020 aa16.26■□□□□ 0.19
LIMS4-201ENST00000413601 HAUS6Q7Z4H7 955 aa16.26■□□□□ 0.19
LIMS4-201ENST00000413601 APBB1IPQ7Z5R6 666 aaPredicted RBP16.26■□□□□ 0.19
LIMS4-201ENST00000413601 RABGGTAQ92696 567 aa16.26■□□□□ 0.19
LIMS4-201ENST00000413601 ZBTB45Q96K62 511 aaPredicted RBP16.26■□□□□ 0.19
LIMS4-201ENST00000413601 MSLNLQ96KJ4 702 aa16.26■□□□□ 0.19
LIMS4-201ENST00000413601 TCHPQ9BT92 498 aa16.26■□□□□ 0.19
LIMS4-201ENST00000413601 ZHX3Q9H4I2 956 aa16.26■□□□□ 0.19
LIMS4-201ENST00000413601 PARVGQ9HBI0 331 aa16.26■□□□□ 0.19
LIMS4-201ENST00000413601 CACNG4Q9UBN1 327 aa16.26■□□□□ 0.19
LIMS4-201ENST00000413601 STK17AQ9UEE5 414 aa16.26■□□□□ 0.19
LIMS4-201ENST00000413601 CD207Q9UJ71 328 aa16.26■□□□□ 0.19
LIMS4-201ENST00000413601 PLXNA3P51805 1871 aa16.26■□□□□ 0.19
LIMS4-201ENST00000413601 A0A087X0B3 334 aa16.25■□□□□ 0.19
LIMS4-201ENST00000413601 TNFRSF10AO00220 468 aa16.25■□□□□ 0.19
LIMS4-201ENST00000413601 NR1I2O75469 434 aa16.25■□□□□ 0.19
LIMS4-201ENST00000413601 YEATS4O95619 227 aa16.25■□□□□ 0.19
LIMS4-201ENST00000413601 THP07101 528 aa16.25■□□□□ 0.19
LIMS4-201ENST00000413601 PROZP22891 400 aa16.25■□□□□ 0.19
LIMS4-201ENST00000413601 ZNF131P52739 623 aa16.25■□□□□ 0.19
LIMS4-201ENST00000413601 OSTNP61366 133 aa16.25■□□□□ 0.19
LIMS4-201ENST00000413601 KCNC3Q14003 757 aa16.25■□□□□ 0.19
LIMS4-201ENST00000413601 MPZL3Q6UWV2 235 aa16.25■□□□□ 0.19
LIMS4-201ENST00000413601 DYMQ7RTS9 669 aa16.25■□□□□ 0.19
LIMS4-201ENST00000413601 CEP120Q8N960 986 aa16.25■□□□□ 0.19
LIMS4-201ENST00000413601 COLEC11Q9BWP8 271 aa16.25■□□□□ 0.19
LIMS4-201ENST00000413601 DAXXQ9UER7 740 aaPredicted RBP16.25■□□□□ 0.19
LIMS4-201ENST00000413601 MTCL1Q9Y4B5 1905 aaKnown RBP16.24■□□□□ 0.19
LIMS4-201ENST00000413601 FSD2A1L4K1 749 aa16.24■□□□□ 0.19
LIMS4-201ENST00000413601 H0YCG3 227 aa16.24■□□□□ 0.19
LIMS4-201ENST00000413601 ABLIM1O14639 778 aa16.24■□□□□ 0.19
LIMS4-201ENST00000413601 MBTPS2O43462 519 aa16.24■□□□□ 0.19
LIMS4-201ENST00000413601 CLASP2O75122 1294 aaKnown RBP16.24■□□□□ 0.19
LIMS4-201ENST00000413601 PPP6R2O75170 966 aa16.24■□□□□ 0.19
LIMS4-201ENST00000413601 TBCAO75347 108 aaKnown RBP16.24■□□□□ 0.19
LIMS4-201ENST00000413601 HARSP12081 509 aaKnown RBP16.24■□□□□ 0.19
LIMS4-201ENST00000413601 GRM5P41594 1212 aa16.24■□□□□ 0.19
LIMS4-201ENST00000413601 STAT6P42226 847 aa16.24■□□□□ 0.19
LIMS4-201ENST00000413601 TUSC3Q13454 348 aa16.24■□□□□ 0.19
LIMS4-201ENST00000413601 SV2BQ7L1I2 683 aa16.24■□□□□ 0.19
LIMS4-201ENST00000413601 TAS1R1Q7RTX1 841 aa16.24■□□□□ 0.19
LIMS4-201ENST00000413601 FAM178BQ8IXR5 827 aa16.24■□□□□ 0.19
LIMS4-201ENST00000413601 PDILTQ8N807 584 aa16.24■□□□□ 0.19
LIMS4-201ENST00000413601 TMEM87AQ8NBN3 555 aa16.24■□□□□ 0.19
LIMS4-201ENST00000413601 PAAF1Q9BRP4 392 aa16.24■□□□□ 0.19
LIMS4-201ENST00000413601 CCDC94Q9BW85 323 aaPredicted RBP16.24■□□□□ 0.19
LIMS4-201ENST00000413601 ANKFY1Q9P2R3 1169 aa16.24■□□□□ 0.19
LIMS4-201ENST00000413601 FAM50BQ9Y247 325 aa16.24■□□□□ 0.19
LIMS4-201ENST00000413601 IRAK3Q9Y616 596 aa16.24■□□□□ 0.19
LIMS4-201ENST00000413601 VWA8A3KMH1 1905 aa16.23■□□□□ 0.19
LIMS4-201ENST00000413601 CASTOR2A6NHX0 329 aa16.23■□□□□ 0.19
LIMS4-201ENST00000413601 K7ENM7 598 aa16.23■□□□□ 0.19
LIMS4-201ENST00000413601 TRAK2O60296 914 aa16.23■□□□□ 0.19
LIMS4-201ENST00000413601 TOM1L1O75674 476 aa16.23■□□□□ 0.19
LIMS4-201ENST00000413601 EFEMP2O95967 443 aa16.23■□□□□ 0.19
LIMS4-201ENST00000413601 MCF2P10911 925 aa16.23■□□□□ 0.19
LIMS4-201ENST00000413601 COASYQ13057 564 aa16.23■□□□□ 0.19
LIMS4-201ENST00000413601 SMAD4Q13485 552 aaKnown RBP16.23■□□□□ 0.19
LIMS4-201ENST00000413601 PTPN14Q15678 1187 aa16.23■□□□□ 0.19
LIMS4-201ENST00000413601 NAB2Q15742 525 aa16.23■□□□□ 0.19
LIMS4-201ENST00000413601 GLRA4Q5JXX5 417 aa16.23■□□□□ 0.19
LIMS4-201ENST00000413601 ZPBP2Q6X784 338 aa16.23■□□□□ 0.19
LIMS4-201ENST00000413601 TMEM184AQ6ZMB5 413 aa16.23■□□□□ 0.19
LIMS4-201ENST00000413601 CCDC73Q6ZRK6 1079 aa16.23■□□□□ 0.19
LIMS4-201ENST00000413601 DDX12PQ92771 950 aa16.23■□□□□ 0.19
LIMS4-201ENST00000413601 BICD1Q96G01 975 aa16.23■□□□□ 0.19
LIMS4-201ENST00000413601 STK39Q9UEW8 545 aa16.23■□□□□ 0.19
LIMS4-201ENST00000413601 TBX20Q9UMR3 447 aa16.23■□□□□ 0.19
LIMS4-201ENST00000413601 ANK1P16157 1881 aa16.22■□□□□ 0.19
LIMS4-201ENST00000413601 MYMKA6NI61 221 aa16.22■□□□□ 0.19
LIMS4-201ENST00000413601 C2CD2LO14523 706 aa16.22■□□□□ 0.19
LIMS4-201ENST00000413601 CUTAO60888 179 aa16.22■□□□□ 0.19
LIMS4-201ENST00000413601 BRD1O95696 1058 aa16.22■□□□□ 0.19
LIMS4-201ENST00000413601 SOD2P04179 222 aa16.22■□□□□ 0.19
LIMS4-201ENST00000413601 SRGAP2BP0DMP2 458 aa16.22■□□□□ 0.19
LIMS4-201ENST00000413601 NMT1P30419 496 aaKnown RBP16.22■□□□□ 0.19
LIMS4-201ENST00000413601 MATR3P43243 847 aaKnown RBP eCLIP16.22■□□□□ 0.19
LIMS4-201ENST00000413601 YARSP54577 528 aaKnown RBP16.22■□□□□ 0.19
LIMS4-201ENST00000413601 DNM1Q05193 864 aaKnown RBP16.22■□□□□ 0.19
LIMS4-201ENST00000413601 HSP90AA2PQ14568 343 aaPredicted RBP16.22■□□□□ 0.19
LIMS4-201ENST00000413601 NOLC1Q14978 699 aaKnown RBP eCLIP16.22■□□□□ 0.19
LIMS4-201ENST00000413601 SMAD2Q15796 467 aaKnown RBP16.22■□□□□ 0.19
LIMS4-201ENST00000413601 SEZ6Q53EL9 994 aa16.22■□□□□ 0.19
LIMS4-201ENST00000413601 RNF168Q8IYW5 571 aaPredicted RBP16.22■□□□□ 0.19
LIMS4-201ENST00000413601 SMRP1Q8NCR6 262 aa16.22■□□□□ 0.19
LIMS4-201ENST00000413601 ACAP3Q96P50 834 aa16.22■□□□□ 0.19
LIMS4-201ENST00000413601 FIZ1Q96SL8 496 aa16.22■□□□□ 0.19
LIMS4-201ENST00000413601 HERC2P3Q9BVR0 1158 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms