RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 ADAM2Q99965 735 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 ARHGAP9Q9BRR9 750 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 TRPV6Q9H1D0 765 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 UBAP1Q9NZ09 502 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 ARIH1Q9Y4X5 557 aaPredicted RBP7.78□□□□□ -1.16
SCN9A-202ENST00000409435 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP7.78□□□□□ -1.16
SCN9A-202ENST00000409435 KDM1AO60341 852 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 ASGR1P07306 291 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 CLTAP09496 248 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 SLC12A2P55011 1212 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 EIF2B5Q13144 721 aaKnown RBP7.78□□□□□ -1.16
SCN9A-202ENST00000409435 LY6KQ17RY6 165 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 INAVAQ3KP66 663 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 NOSTRINQ8IVI9 506 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 IFT20Q8IY31 132 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 CEP70Q8NHQ1 597 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 PDCD6IPQ8WUM4 868 aaKnown RBP7.78□□□□□ -1.16
SCN9A-202ENST00000409435 SPG21Q9NZD8 308 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 ARHGAP42A6NI28 874 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 SGPL1O95470 568 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 TROVE2P10155 538 aaKnown RBP eCLIP7.78□□□□□ -1.16
SCN9A-202ENST00000409435 KLRC1P26715 233 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 ADORA2BP29275 332 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 PSMC6P62333 389 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 EMC2Q15006 297 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 TAF11Q15544 211 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 E2F4Q16254 413 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 NRBF2Q96F24 287 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 L3MBTL3Q96JM7 780 aaPredicted RBP7.78□□□□□ -1.16
SCN9A-202ENST00000409435 ARMCX3Q9UH62 379 aaPredicted RBP7.78□□□□□ -1.16
SCN9A-202ENST00000409435 NDRG2Q9UN36 371 aaKnown RBP7.78□□□□□ -1.16
SCN9A-202ENST00000409435 INSL6Q9Y581 213 aa7.78□□□□□ -1.16
SCN9A-202ENST00000409435 MOCS2O96007 188 aaPredicted RBP7.77□□□□□ -1.16
SCN9A-202ENST00000409435 CPA1P15085 419 aa7.77□□□□□ -1.16
SCN9A-202ENST00000409435 PHBP35232 272 aa7.77□□□□□ -1.16
SCN9A-202ENST00000409435 PSMC2P35998 433 aaKnown RBP7.77□□□□□ -1.16
SCN9A-202ENST00000409435 ZNF280AP59817 542 aaPredicted RBP7.77□□□□□ -1.16
SCN9A-202ENST00000409435 OCA2Q04671 838 aa7.77□□□□□ -1.16
SCN9A-202ENST00000409435 PPP2R5CQ13362 524 aa7.77□□□□□ -1.16
SCN9A-202ENST00000409435 FOXR1Q6PIV2 292 aa7.77□□□□□ -1.16
SCN9A-202ENST00000409435 OTUD7AQ8TE49 926 aaPredicted RBP7.77□□□□□ -1.16
SCN9A-202ENST00000409435 TGS1Q96RS0 853 aaKnown RBP7.77□□□□□ -1.16
SCN9A-202ENST00000409435 SLC9A3R1O14745 358 aaPredicted RBP7.77□□□□□ -1.17
SCN9A-202ENST00000409435 POLR2DO15514 142 aaKnown RBP7.77□□□□□ -1.17
SCN9A-202ENST00000409435 ACTN4O43707 911 aaKnown RBP7.77□□□□□ -1.17
SCN9A-202ENST00000409435 TBC1D12O60347 775 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 USP11P51784 963 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 PTH1RQ03431 593 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 TREML2Q5T2D2 321 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 FAM171A1Q5VUB5 890 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 MMS22LQ6ZRQ5 1243 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 APLFQ8IW19 511 aaPredicted RBP7.77□□□□□ -1.17
SCN9A-202ENST00000409435 ENAHQ8N8S7 591 aaPredicted RBP7.77□□□□□ -1.17
SCN9A-202ENST00000409435 GMCL1P1Q8NEA9 526 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 SDCCAG3Q96C92 435 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 CEP19Q96LK0 163 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 MXRA8Q9BRK3 442 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 BHMT2Q9H2M3 363 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 MED4Q9NPJ6 270 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 KCNH3Q9ULD8 1083 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 ZNF711Q9Y462 761 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 SLC16A4O15374 487 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 S100BP04271 92 aaPredicted RBP7.77□□□□□ -1.17
SCN9A-202ENST00000409435 HMBSP08397 361 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 PRR29P0C7W0 189 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 POTEIP0CG38 1075 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 GNGT1P63211 74 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 ELF2Q15723 593 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 OOSP2Q86WS3 158 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 FAM71BQ8TC56 605 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 MAPK8IP1Q9UQF2 711 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 SLC45A1Q9Y2W3 748 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 GOLGA8KD6RF30 607 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 KRT7P08729 469 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 PLA2G4BP0C869 781 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 ACTR2P61160 394 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 MRPS15P82914 257 aaKnown RBP7.77□□□□□ -1.17
SCN9A-202ENST00000409435 RBP5P82980 135 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 DRP2Q13474 957 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 RARS2Q5T160 578 aaKnown RBP7.77□□□□□ -1.17
SCN9A-202ENST00000409435 RINT1Q6NUQ1 792 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 APOA5Q6Q788 366 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 OTOP3Q7RTS5 596 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 TXNRD3Q86VQ6 643 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 TMCO5AQ8N6Q1 288 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 USP38Q8NB14 1042 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 CFAP61Q8NHU2 1237 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 ASAH2Q9NR71 780 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 AHDC1Q5TGY3 1603 aaPredicted RBP7.77□□□□□ -1.17
SCN9A-202ENST00000409435 SH2B2O14492 632 aaPredicted RBP7.77□□□□□ -1.17
SCN9A-202ENST00000409435 GADD45BO75293 160 aaPredicted RBP7.77□□□□□ -1.17
SCN9A-202ENST00000409435 VTNP04004 478 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 PNPLA4P41247 253 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 MRPS6P82932 125 aaKnown RBP7.77□□□□□ -1.17
SCN9A-202ENST00000409435 ANO6Q4KMQ2 910 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 C8orf74Q6P047 294 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 KIAA1324Q6UXG2 1013 aaKnown RBP7.77□□□□□ -1.17
SCN9A-202ENST00000409435 SMG7Q92540 1137 aaKnown RBP7.77□□□□□ -1.17
SCN9A-202ENST00000409435 SPZ1Q9BXG8 430 aa7.77□□□□□ -1.17
SCN9A-202ENST00000409435 RTFDC1Q9BY42 306 aaPredicted RBP7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms