RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 KRT19P08727 400 aa12.72□□□□□ -0.37
HMGB1-206ENST00000405805 MFAP3P55082 362 aa12.72□□□□□ -0.37
HMGB1-206ENST00000405805 NPEPPSP55786 919 aa12.72□□□□□ -0.37
HMGB1-206ENST00000405805 BSPRYQ5W0U4 402 aa12.72□□□□□ -0.37
HMGB1-206ENST00000405805 TRPM8Q7Z2W7 1104 aa12.72□□□□□ -0.37
HMGB1-206ENST00000405805 PALB2Q86YC2 1186 aa12.72□□□□□ -0.37
HMGB1-206ENST00000405805 FBXO41Q8TF61 875 aa12.72□□□□□ -0.37
HMGB1-206ENST00000405805 PFDN4Q9NQP4 134 aa12.72□□□□□ -0.37
HMGB1-206ENST00000405805 COL18A1P39060 1754 aa12.71□□□□□ -0.37
HMGB1-206ENST00000405805 ECE2O60344 883 aa12.71□□□□□ -0.37
HMGB1-206ENST00000405805 IRX4P78413 519 aa12.71□□□□□ -0.37
HMGB1-206ENST00000405805 NT5DC3Q86UY8 548 aa12.71□□□□□ -0.37
HMGB1-206ENST00000405805 CCHCR1Q8TD31 782 aa12.71□□□□□ -0.37
HMGB1-206ENST00000405805 DHX38Q92620 1227 aaKnown RBP12.71□□□□□ -0.37
HMGB1-206ENST00000405805 MASTLQ96GX5 879 aa12.71□□□□□ -0.37
HMGB1-206ENST00000405805 PURBQ96QR8 312 aaKnown RBP12.71□□□□□ -0.37
HMGB1-206ENST00000405805 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.71□□□□□ -0.37
HMGB1-206ENST00000405805 SUCLA2Q9P2R7 463 aaPredicted RBP12.71□□□□□ -0.37
HMGB1-206ENST00000405805 LRRIQ4A6NIV6 560 aa12.71□□□□□ -0.37
HMGB1-206ENST00000405805 PPP1R11O60927 126 aaPredicted RBP12.71□□□□□ -0.37
HMGB1-206ENST00000405805 UBOX5O94941 541 aa12.71□□□□□ -0.37
HMGB1-206ENST00000405805 EYA4O95677 639 aa12.71□□□□□ -0.37
HMGB1-206ENST00000405805 ECE1P42892 770 aa12.71□□□□□ -0.37
HMGB1-206ENST00000405805 LIN9Q5TKA1 542 aa12.71□□□□□ -0.37
HMGB1-206ENST00000405805 IRF2BP2Q7Z5L9 587 aa12.71□□□□□ -0.37
HMGB1-206ENST00000405805 PRUNE1Q86TP1 453 aa12.71□□□□□ -0.37
HMGB1-206ENST00000405805 PRCCQ92733 491 aaPredicted RBP12.71□□□□□ -0.37
HMGB1-206ENST00000405805 PCDHB4Q9Y5E5 795 aa12.71□□□□□ -0.37
HMGB1-206ENST00000405805 SYNGAP1Q96PV0 1343 aa12.71□□□□□ -0.37
HMGB1-206ENST00000405805 A0A0G2JND7 137 aa12.71□□□□□ -0.38
HMGB1-206ENST00000405805 IGF2BP3O00425 579 aaKnown RBP eCLIP12.71□□□□□ -0.38
HMGB1-206ENST00000405805 HNRNPH3P31942 346 aaKnown RBP12.71□□□□□ -0.38
HMGB1-206ENST00000405805 OSTNP61366 133 aa12.71□□□□□ -0.38
HMGB1-206ENST00000405805 ZBTB17Q13105 803 aa12.71□□□□□ -0.38
HMGB1-206ENST00000405805 SYT2Q8N9I0 419 aaPredicted RBP12.71□□□□□ -0.38
HMGB1-206ENST00000405805 XXYLT1Q8NBI6 393 aa12.71□□□□□ -0.38
HMGB1-206ENST00000405805 SYN2Q92777 582 aaPredicted RBP12.71□□□□□ -0.38
HMGB1-206ENST00000405805 HIC2Q96JB3 615 aa12.71□□□□□ -0.38
HMGB1-206ENST00000405805 PABPC3Q9H361 631 aaKnown RBP12.71□□□□□ -0.38
HMGB1-206ENST00000405805 ESYT2A0FGR8 921 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 PODXLO00592 558 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 ATP2A2P16615 1042 aaKnown RBP12.7□□□□□ -0.38
HMGB1-206ENST00000405805 MAPK7Q13164 816 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 ANKRD20A3Q5VUR7 823 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 LRIG3Q6UXM1 1119 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 WDR75Q8IWA0 830 aaKnown RBP12.7□□□□□ -0.38
HMGB1-206ENST00000405805 CEP170P1Q96L14 293 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 FAM20AQ96MK3 541 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 FAM213AQ9BRX8 229 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 ERVK-5Q9HDB9 667 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 NOL3O60936 208 aaKnown RBP12.7□□□□□ -0.38
HMGB1-206ENST00000405805 CIB2O75838 187 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 YY1P25490 414 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 CHRNA3P32297 505 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 SCNN1BP51168 640 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 BFSP1Q12934 665 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 RCN2Q14257 317 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 ARSHQ5FYA8 562 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 PLA2G4FQ68DD2 849 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 OLFML1Q6UWY5 402 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 CYFIP1Q7L576 1253 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 ANKMY2Q8IV38 441 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 FUKQ8N0W3 1084 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 CXorf38Q8TB03 319 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 ACTRT1Q8TDG2 376 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 ITFG2Q969R8 447 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 ACCSQ96QU6 501 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 CRAMP1Q96RY5 1269 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 AGPAT3Q9NRZ7 376 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 ABCF3Q9NUQ8 709 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 GINS2Q9Y248 185 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 DDTLA6NHG4 134 aaPredicted RBP12.7□□□□□ -0.38
HMGB1-206ENST00000405805 DNM1LO00429 736 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 FGRP09769 529 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 RPL21P46778 160 aaKnown RBP12.7□□□□□ -0.38
HMGB1-206ENST00000405805 LIG4P49917 911 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 RHBDL3P58872 404 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 IL9RQ01113 521 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 ITIH3Q06033 890 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 DNAJC3Q13217 504 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 BBS9Q3SYG4 887 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 PREPLQ4J6C6 727 aaPredicted RBP12.7□□□□□ -0.38
HMGB1-206ENST00000405805 TMEM119Q4V9L6 283 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 ANKRD20A8PQ5CZ79 823 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 SCARA5Q6ZMJ2 495 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 PALM2Q8IXS6 379 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 ARHGAP18Q8N392 663 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 CHURC1Q8WUH1 139 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 ALG3Q92685 438 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 GANQ9H2C0 597 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 AJAP1Q9UKB5 411 aaPredicted RBP12.7□□□□□ -0.38
HMGB1-206ENST00000405805 GJA3Q9Y6H8 435 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 TRAPPC3O43617 180 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 SOX10P56693 466 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 COL23A1Q86Y22 540 aaPredicted RBP12.7□□□□□ -0.38
HMGB1-206ENST00000405805 MSL3Q8N5Y2 521 aaKnown RBP12.7□□□□□ -0.38
HMGB1-206ENST00000405805 CCDC89Q8N998 374 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 KMT5AQ9NQR1 393 aa12.7□□□□□ -0.38
HMGB1-206ENST00000405805 TOPORSQ9NS56 1045 aaPredicted RBP12.7□□□□□ -0.38
HMGB1-206ENST00000405805 DKC1O60832 514 aaKnown RBP eCLIP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms