RNA–Protein interactions for RNA: ENST00000397378.7

NEDD9-203, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 470 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-203ENST00000397378 STBD1O95210 358 aa10.55□□□□□ -0.72
NEDD9-203ENST00000397378 EFEMP2O95967 443 aa10.55□□□□□ -0.72
NEDD9-203ENST00000397378 GNA11P29992 359 aa10.55□□□□□ -0.72
NEDD9-203ENST00000397378 CDC27P30260 824 aa10.55□□□□□ -0.72
NEDD9-203ENST00000397378 DSG1Q02413 1049 aa10.55□□□□□ -0.72
NEDD9-203ENST00000397378 MTERF2Q49AM1 385 aa10.55□□□□□ -0.72
NEDD9-203ENST00000397378 XKR3Q5GH77 459 aa10.55□□□□□ -0.72
NEDD9-203ENST00000397378 PPM1LQ5SGD2 360 aa10.55□□□□□ -0.72
NEDD9-203ENST00000397378 SH3PXD2AQ5TCZ1 1133 aa10.55□□□□□ -0.72
NEDD9-203ENST00000397378 LIN9Q5TKA1 542 aa10.55□□□□□ -0.72
NEDD9-203ENST00000397378 KIAA1211LQ6NV74 962 aa10.55□□□□□ -0.72
NEDD9-203ENST00000397378 CATSPER4Q7RTX7 472 aa10.55□□□□□ -0.72
NEDD9-203ENST00000397378 RNF168Q8IYW5 571 aaPredicted RBP10.55□□□□□ -0.72
NEDD9-203ENST00000397378 ZNF687Q8N1G0 1237 aa10.55□□□□□ -0.72
NEDD9-203ENST00000397378 ING5Q8WYH8 240 aa10.55□□□□□ -0.72
NEDD9-203ENST00000397378 FAM3CQ92520 227 aa10.55□□□□□ -0.72
NEDD9-203ENST00000397378 DNASE1L2Q92874 299 aa10.55□□□□□ -0.72
NEDD9-203ENST00000397378 SLC5A5Q92911 643 aa10.55□□□□□ -0.72
NEDD9-203ENST00000397378 B3GALT6Q96L58 329 aa10.55□□□□□ -0.72
NEDD9-203ENST00000397378 EDEM2Q9BV94 578 aa10.55□□□□□ -0.72
NEDD9-203ENST00000397378 TEKT3Q9BXF9 490 aa10.55□□□□□ -0.72
NEDD9-203ENST00000397378 PLA2G2FQ9BZM2 168 aa10.55□□□□□ -0.72
NEDD9-203ENST00000397378 UNC45AQ9H3U1 944 aa10.55□□□□□ -0.72
NEDD9-203ENST00000397378 RSAD1Q9HA92 442 aa10.55□□□□□ -0.72
NEDD9-203ENST00000397378 AGPAT5Q9NUQ2 364 aa10.55□□□□□ -0.72
NEDD9-203ENST00000397378 SUCLA2Q9P2R7 463 aaPredicted RBP10.55□□□□□ -0.72
NEDD9-203ENST00000397378 SEPT9Q9UHD8 586 aaPredicted RBP10.55□□□□□ -0.72
NEDD9-203ENST00000397378 DMXL2Q8TDJ6 3036 aa10.55□□□□□ -0.72
NEDD9-203ENST00000397378 SMG1Q96Q15 3661 aaKnown RBP10.54□□□□□ -0.72
NEDD9-203ENST00000397378 ARID2Q68CP9 1835 aa10.54□□□□□ -0.72
NEDD9-203ENST00000397378 EDIL3O43854 480 aa10.54□□□□□ -0.72
NEDD9-203ENST00000397378 MAFO75444 373 aaPredicted RBP10.54□□□□□ -0.72
NEDD9-203ENST00000397378 ECI2O75521 394 aa10.54□□□□□ -0.72
NEDD9-203ENST00000397378 EPN2O95208 641 aa10.54□□□□□ -0.72
NEDD9-203ENST00000397378 RPL17P18621 184 aaKnown RBP10.54□□□□□ -0.72
NEDD9-203ENST00000397378 USP11P51784 963 aa10.54□□□□□ -0.72
NEDD9-203ENST00000397378 AFF1P51825 1210 aaKnown RBP10.54□□□□□ -0.72
NEDD9-203ENST00000397378 RNF20Q5VTR2 975 aa10.54□□□□□ -0.72
NEDD9-203ENST00000397378 LRCH2Q5VUJ6 765 aa10.54□□□□□ -0.72
NEDD9-203ENST00000397378 LILRA6Q6PI73 481 aa10.54□□□□□ -0.72
NEDD9-203ENST00000397378 DHX32Q7L7V1 743 aaKnown RBP10.54□□□□□ -0.72
NEDD9-203ENST00000397378 RHPN2Q8IUC4 686 aa10.54□□□□□ -0.72
NEDD9-203ENST00000397378 NPAS3Q8IXF0 933 aa10.54□□□□□ -0.72
NEDD9-203ENST00000397378 GPR65Q8IYL9 337 aa10.54□□□□□ -0.72
NEDD9-203ENST00000397378 BICD2Q8TD16 824 aa10.54□□□□□ -0.72
NEDD9-203ENST00000397378 LOXL4Q96JB6 756 aa10.54□□□□□ -0.72
NEDD9-203ENST00000397378 JPH2Q9BR39 696 aaPredicted RBP10.54□□□□□ -0.72
NEDD9-203ENST00000397378 ESYT1Q9BSJ8 1104 aa10.54□□□□□ -0.72
NEDD9-203ENST00000397378 BRD9Q9H8M2 597 aa10.54□□□□□ -0.72
NEDD9-203ENST00000397378 IFT122Q9HBG6 1241 aa10.54□□□□□ -0.72
NEDD9-203ENST00000397378 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.54□□□□□ -0.72
NEDD9-203ENST00000397378 TICRRQ7Z2Z1 1910 aa10.54□□□□□ -0.72
NEDD9-203ENST00000397378 AKAP13Q12802 2813 aa10.53□□□□□ -0.72
NEDD9-203ENST00000397378 NOTCH4Q99466 2003 aa10.53□□□□□ -0.72
NEDD9-203ENST00000397378 KLF18A0A0U1RQI7 1052 aa10.53□□□□□ -0.72
NEDD9-203ENST00000397378 CCDC196A0A1B0GTZ2 297 aa10.53□□□□□ -0.72
NEDD9-203ENST00000397378 C4orf47A7E2U8 309 aa10.53□□□□□ -0.72
NEDD9-203ENST00000397378 K7ESF4 209 aa10.53□□□□□ -0.72
NEDD9-203ENST00000397378 CHMP2AO43633 222 aa10.53□□□□□ -0.72
NEDD9-203ENST00000397378 XYLBO75191 536 aa10.53□□□□□ -0.72
NEDD9-203ENST00000397378 PSMD10O75832 226 aa10.53□□□□□ -0.72
NEDD9-203ENST00000397378 SEC24BO95487 1268 aa10.53□□□□□ -0.72
NEDD9-203ENST00000397378 C8AP07357 584 aa10.53□□□□□ -0.72
NEDD9-203ENST00000397378 HNRNPA1P09651 372 aaKnown RBP eCLIP10.53□□□□□ -0.72
NEDD9-203ENST00000397378 ADD1P35611 737 aaKnown RBP10.53□□□□□ -0.72
NEDD9-203ENST00000397378 MPLP40238 635 aa10.53□□□□□ -0.72
NEDD9-203ENST00000397378 GAS6Q14393 721 aa10.53□□□□□ -0.72
NEDD9-203ENST00000397378 GRM2Q14416 872 aa10.53□□□□□ -0.72
NEDD9-203ENST00000397378 COL28A1Q2UY09 1125 aa10.53□□□□□ -0.72
NEDD9-203ENST00000397378 TSGA10IPQ3SY00 556 aa10.53□□□□□ -0.72
NEDD9-203ENST00000397378 DAB2IPQ5VWQ8 1189 aa10.53□□□□□ -0.72
NEDD9-203ENST00000397378 TCEAL6Q6IPX3 200 aa10.53□□□□□ -0.72
NEDD9-203ENST00000397378 B3GNT9Q6UX72 402 aa10.53□□□□□ -0.72
NEDD9-203ENST00000397378 MIER3Q7Z3K6 550 aa10.53□□□□□ -0.72
NEDD9-203ENST00000397378 KSR1Q8IVT5 923 aa10.53□□□□□ -0.72
NEDD9-203ENST00000397378 COLGALT2Q8IYK4 626 aa10.53□□□□□ -0.72
NEDD9-203ENST00000397378 SPEM1Q8N4L4 309 aa10.53□□□□□ -0.72
NEDD9-203ENST00000397378 CNNM3Q8NE01 707 aa10.53□□□□□ -0.72
NEDD9-203ENST00000397378 TCEAL3Q969E4 200 aa10.53□□□□□ -0.72
NEDD9-203ENST00000397378 MCRS1Q96EZ8 462 aa10.53□□□□□ -0.72
NEDD9-203ENST00000397378 CCDC136Q96JN2 1154 aa10.53□□□□□ -0.72
NEDD9-203ENST00000397378 NLRP4Q96MN2 994 aa10.53□□□□□ -0.72
NEDD9-203ENST00000397378 TCEANC2Q96MN5 208 aa10.53□□□□□ -0.72
NEDD9-203ENST00000397378 UBN1Q9NPG3 1134 aa10.53□□□□□ -0.72
NEDD9-203ENST00000397378 GPSM3Q9Y4H4 160 aa10.53□□□□□ -0.72
NEDD9-203ENST00000397378 LAMA1P25391 3075 aa10.52□□□□□ -0.72
NEDD9-203ENST00000397378 F5P12259 2224 aa10.52□□□□□ -0.73
NEDD9-203ENST00000397378 TMEM150BA6NC51 233 aa10.52□□□□□ -0.73
NEDD9-203ENST00000397378 CYSRT1A8MQ03 144 aa10.52□□□□□ -0.73
NEDD9-203ENST00000397378 F8W810 466 aa10.52□□□□□ -0.73
NEDD9-203ENST00000397378 PRPF3O43395 683 aaKnown RBP10.52□□□□□ -0.73
NEDD9-203ENST00000397378 HYAL3O43820 417 aaPredicted RBP10.52□□□□□ -0.73
NEDD9-203ENST00000397378 CCDC192P0DO97 292 aa10.52□□□□□ -0.73
NEDD9-203ENST00000397378 CHRNB1P11230 501 aa10.52□□□□□ -0.73
NEDD9-203ENST00000397378 HOXA11P31270 313 aaPredicted RBP10.52□□□□□ -0.73
NEDD9-203ENST00000397378 CREMQ03060 361 aa10.52□□□□□ -0.73
NEDD9-203ENST00000397378 DSC1Q08554 894 aa10.52□□□□□ -0.73
NEDD9-203ENST00000397378 PABPC1LQ4VXU2 614 aaKnown RBP10.52□□□□□ -0.73
NEDD9-203ENST00000397378 PLA2G2CQ5R387 149 aa10.52□□□□□ -0.73
NEDD9-203ENST00000397378 UBXN11Q5T124 520 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms