RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 SCYL1Q96KG9 808 aa14.05□□□□□ -0.16
NPHP4-203ENST00000378169 PDCD2LQ9BRP1 358 aa14.05□□□□□ -0.16
NPHP4-203ENST00000378169 THAP2Q9H0W7 228 aa14.05□□□□□ -0.16
NPHP4-203ENST00000378169 TBX20Q9UMR3 447 aa14.05□□□□□ -0.16
NPHP4-203ENST00000378169 AGAP1Q9UPQ3 857 aa14.05□□□□□ -0.16
NPHP4-203ENST00000378169 FNDC3AQ9Y2H6 1198 aaKnown RBP14.05□□□□□ -0.16
NPHP4-203ENST00000378169 USP20Q9Y2K6 914 aa14.05□□□□□ -0.16
NPHP4-203ENST00000378169 DYNC1LI2O43237 492 aaPredicted RBP14.04□□□□□ -0.16
NPHP4-203ENST00000378169 SDC4P31431 198 aa14.04□□□□□ -0.16
NPHP4-203ENST00000378169 TNFAIP2Q03169 654 aa14.04□□□□□ -0.16
NPHP4-203ENST00000378169 SYCP2LQ5T4T6 812 aa14.04□□□□□ -0.16
NPHP4-203ENST00000378169 ZNF720Q7Z2F6 126 aa14.04□□□□□ -0.16
NPHP4-203ENST00000378169 ZC3H18Q86VM9 953 aaKnown RBP14.04□□□□□ -0.16
NPHP4-203ENST00000378169 TIPINQ9BVW5 301 aa14.04□□□□□ -0.16
NPHP4-203ENST00000378169 EFCC1Q9HA90 598 aa14.04□□□□□ -0.16
NPHP4-203ENST00000378169 INTS13Q9NVM9 706 aa14.04□□□□□ -0.16
NPHP4-203ENST00000378169 MRC1P22897 1456 aa14.04□□□□□ -0.16
NPHP4-203ENST00000378169 A8MXQ7 604 aa14.04□□□□□ -0.16
NPHP4-203ENST00000378169 RASA4BC9J798 803 aa14.04□□□□□ -0.16
NPHP4-203ENST00000378169 RGL2O15211 777 aa14.04□□□□□ -0.16
NPHP4-203ENST00000378169 RASA4O43374 803 aa14.04□□□□□ -0.16
NPHP4-203ENST00000378169 HUS1O60921 280 aa14.04□□□□□ -0.16
NPHP4-203ENST00000378169 RPS12P25398 132 aaKnown RBP14.04□□□□□ -0.16
NPHP4-203ENST00000378169 NOP14P78316 857 aaKnown RBP14.04□□□□□ -0.16
NPHP4-203ENST00000378169 KCNA1Q09470 495 aa14.04□□□□□ -0.16
NPHP4-203ENST00000378169 LRRC14Q15048 493 aa14.04□□□□□ -0.16
NPHP4-203ENST00000378169 METTL23Q86XA0 190 aa14.04□□□□□ -0.16
NPHP4-203ENST00000378169 CCHCR1Q8TD31 782 aa14.04□□□□□ -0.16
NPHP4-203ENST00000378169 PPP4R1Q8TF05 950 aa14.04□□□□□ -0.16
NPHP4-203ENST00000378169 FAF2Q96CS3 445 aa14.04□□□□□ -0.16
NPHP4-203ENST00000378169 DMGDHQ9UI17 866 aaKnown RBP14.04□□□□□ -0.16
NPHP4-203ENST00000378169 STRIP2Q9ULQ0 834 aa14.04□□□□□ -0.16
NPHP4-203ENST00000378169 MAFGO15525 162 aa14.04□□□□□ -0.16
NPHP4-203ENST00000378169 PGK2P07205 417 aa14.04□□□□□ -0.16
NPHP4-203ENST00000378169 ADORA2BP29275 332 aa14.04□□□□□ -0.16
NPHP4-203ENST00000378169 RASSF2P50749 326 aa14.04□□□□□ -0.16
NPHP4-203ENST00000378169 GUCY1A3Q02108 690 aa14.04□□□□□ -0.16
NPHP4-203ENST00000378169 CNOT10Q9H9A5 744 aaKnown RBP14.04□□□□□ -0.16
NPHP4-203ENST00000378169 ANKEF1Q9NU02 776 aa14.04□□□□□ -0.16
NPHP4-203ENST00000378169 SNX9Q9Y5X1 595 aa14.04□□□□□ -0.16
NPHP4-203ENST00000378169 A0A0U1RQJ8 604 aa14.04□□□□□ -0.16
NPHP4-203ENST00000378169 ARHGAP42A6NI28 874 aa14.04□□□□□ -0.16
NPHP4-203ENST00000378169 NPTX2P47972 431 aa14.04□□□□□ -0.16
NPHP4-203ENST00000378169 NXNQ6DKJ4 435 aa14.04□□□□□ -0.16
NPHP4-203ENST00000378169 SPATS2Q86XZ4 545 aaKnown RBP14.04□□□□□ -0.16
NPHP4-203ENST00000378169 DCLK2Q8N568 766 aa14.04□□□□□ -0.16
NPHP4-203ENST00000378169 IGSF9BQ9UPX0 1349 aa14.03□□□□□ -0.16
NPHP4-203ENST00000378169 FAM237AA0A1B0GTK4 181 aa14.03□□□□□ -0.16
NPHP4-203ENST00000378169 ASB14A6NK59 587 aa14.03□□□□□ -0.16
NPHP4-203ENST00000378169 KRT17Q04695 432 aa14.03□□□□□ -0.16
NPHP4-203ENST00000378169 FIGNQ5HY92 759 aa14.03□□□□□ -0.16
NPHP4-203ENST00000378169 RAPH1Q70E73 1250 aa14.03□□□□□ -0.16
NPHP4-203ENST00000378169 TMEM8AQ9HCN3 771 aa14.03□□□□□ -0.16
NPHP4-203ENST00000378169 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.03□□□□□ -0.16
NPHP4-203ENST00000378169 SLC4A1P02730 911 aa14.03□□□□□ -0.16
NPHP4-203ENST00000378169 KRT3P12035 628 aa14.03□□□□□ -0.16
NPHP4-203ENST00000378169 RGS7P49802 495 aa14.03□□□□□ -0.16
NPHP4-203ENST00000378169 RCN2Q14257 317 aa14.03□□□□□ -0.16
NPHP4-203ENST00000378169 GLIS2Q9BZE0 524 aaPredicted RBP14.03□□□□□ -0.16
NPHP4-203ENST00000378169 IP6K2Q9UHH9 426 aa14.03□□□□□ -0.16
NPHP4-203ENST00000378169 PCDHB2Q9Y5E7 798 aa14.03□□□□□ -0.16
NPHP4-203ENST00000378169 GRAP2O75791 330 aa14.03□□□□□ -0.16
NPHP4-203ENST00000378169 SLITRK3O94933 977 aa14.03□□□□□ -0.16
NPHP4-203ENST00000378169 TM4SF1P30408 202 aa14.03□□□□□ -0.16
NPHP4-203ENST00000378169 TFDP2Q14188 446 aa14.03□□□□□ -0.16
NPHP4-203ENST00000378169 PCGF5Q86SE9 256 aa14.03□□□□□ -0.16
NPHP4-203ENST00000378169 BEST2Q8NFU1 509 aa14.03□□□□□ -0.16
NPHP4-203ENST00000378169 KLHL29Q96CT2 875 aa14.03□□□□□ -0.16
NPHP4-203ENST00000378169 ASNSD1Q9NWL6 643 aa14.03□□□□□ -0.16
NPHP4-203ENST00000378169 SLC26A4O43511 780 aa14.02□□□□□ -0.16
NPHP4-203ENST00000378169 TCF7P36402 384 aaPredicted RBP14.02□□□□□ -0.16
NPHP4-203ENST00000378169 CDH6P55285 790 aa14.02□□□□□ -0.16
NPHP4-203ENST00000378169 SESN3P58005 492 aa14.02□□□□□ -0.16
NPHP4-203ENST00000378169 SPDYE2Q495Y8 402 aa14.02□□□□□ -0.16
NPHP4-203ENST00000378169 KIAA1755Q5JYT7 1200 aa14.02□□□□□ -0.16
NPHP4-203ENST00000378169 SLC51AQ86UW1 340 aa14.02□□□□□ -0.16
NPHP4-203ENST00000378169 BTBD6Q96KE9 485 aa14.02□□□□□ -0.16
NPHP4-203ENST00000378169 MTMR9Q96QG7 549 aa14.02□□□□□ -0.16
NPHP4-203ENST00000378169 OSGEPQ9NPF4 335 aa14.02□□□□□ -0.16
NPHP4-203ENST00000378169 CYP26B1Q9NR63 512 aa14.02□□□□□ -0.16
NPHP4-203ENST00000378169 PARVAQ9NVD7 372 aa14.02□□□□□ -0.16
NPHP4-203ENST00000378169 TACC3Q9Y6A5 838 aa14.02□□□□□ -0.16
NPHP4-203ENST00000378169 TMEM253P0C7T8 217 aa14.02□□□□□ -0.16
NPHP4-203ENST00000378169 MXD4Q14582 209 aaPredicted RBP14.02□□□□□ -0.16
NPHP4-203ENST00000378169 Q4G0T1 1027 aa14.02□□□□□ -0.16
NPHP4-203ENST00000378169 TRIM72Q6ZMU5 477 aa14.02□□□□□ -0.16
NPHP4-203ENST00000378169 ZNF571Q7Z3V5 609 aaPredicted RBP14.02□□□□□ -0.16
NPHP4-203ENST00000378169 USP38Q8NB14 1042 aa14.02□□□□□ -0.16
NPHP4-203ENST00000378169 HAS1Q92839 578 aa14.02□□□□□ -0.16
NPHP4-203ENST00000378169 MTMR8Q96EF0 704 aa14.02□□□□□ -0.16
NPHP4-203ENST00000378169 C9orf72Q96LT7 481 aa14.02□□□□□ -0.16
NPHP4-203ENST00000378169 SMARCAD1Q9H4L7 1026 aa14.02□□□□□ -0.16
NPHP4-203ENST00000378169 FAM187AA6NFU0 413 aa14.02□□□□□ -0.17
NPHP4-203ENST00000378169 BCAR1P56945 870 aa14.02□□□□□ -0.17
NPHP4-203ENST00000378169 TBX2Q13207 712 aaPredicted RBP14.02□□□□□ -0.17
NPHP4-203ENST00000378169 IZUMO3Q5VZ72 239 aa14.02□□□□□ -0.17
NPHP4-203ENST00000378169 RWDD4Q6NW29 188 aaKnown RBP14.02□□□□□ -0.17
NPHP4-203ENST00000378169 OTOP1Q7RTM1 612 aa14.02□□□□□ -0.17
NPHP4-203ENST00000378169 TRAPPC11Q7Z392 1133 aa14.02□□□□□ -0.17
NPHP4-203ENST00000378169 C18orf8Q96DM3 657 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms