RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 TRAIPQ9BWF2 469 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 IP6K2Q9UHH9 426 aa6.96□□□□□ -1.3
SMC1A-202ENST00000375340 MAP2K7O14733 419 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 MSH4O15457 936 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 HAUS5O94927 633 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 ANKRD20A8PQ5CZ79 823 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 C7orf31Q8N865 590 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 SYN2Q92777 582 aaPredicted RBP6.95□□□□□ -1.3
SMC1A-202ENST00000375340 ABTB1Q969K4 478 aaPredicted RBP6.95□□□□□ -1.3
SMC1A-202ENST00000375340 NUDT12Q9BQG2 462 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 CLGNO14967 610 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 ROR1Q01973 937 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 TFDP1Q14186 410 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 KRT39Q6A163 491 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 TMEM139Q8IV31 216 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 KLF6Q99612 283 aaPredicted RBP6.95□□□□□ -1.3
SMC1A-202ENST00000375340 SPECC1L-ADORA2AF8WAN1 911 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 GMNNO75496 209 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 MYBL1P10243 752 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 COILP38432 576 aaPredicted RBP6.95□□□□□ -1.3
SMC1A-202ENST00000375340 GPC3P51654 580 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 MIIPQ5JXC2 388 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 SNRNP48Q6IEG0 339 aaKnown RBP6.95□□□□□ -1.3
SMC1A-202ENST00000375340 PPFIA2O75334 1257 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 MMP10P09238 476 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 CAV1Q03135 178 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 SEPT6Q14141 434 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 SNRNP35Q16560 246 aaKnown RBP6.95□□□□□ -1.3
SMC1A-202ENST00000375340 CYB5D1Q6P9G0 228 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 FAM160B2Q86V87 743 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 CDKL2Q92772 493 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 CAVIN3Q969G5 261 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 RBM41Q96IZ5 413 aaKnown RBP6.95□□□□□ -1.3
SMC1A-202ENST00000375340 ARL2BPQ9Y2Y0 163 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 PALM3A6NDB9 673 aaPredicted RBP6.95□□□□□ -1.3
SMC1A-202ENST00000375340 CFAP73A6NFT4 308 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 EPHB6O15197 1021 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 ACOT2P49753 483 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 RNASELQ05823 741 aaKnown RBP6.95□□□□□ -1.3
SMC1A-202ENST00000375340 GIT2Q14161 759 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 HAUS6Q7Z4H7 955 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 PPM1NQ8N819 430 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 EXT2Q93063 718 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 TMEM143Q96AN5 459 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 NOD2Q9HC29 1040 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 GDF3Q9NR23 364 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 MARCOQ9UEW3 520 aaPredicted RBP6.95□□□□□ -1.3
SMC1A-202ENST00000375340 QARSP47897 775 aaKnown RBP6.95□□□□□ -1.3
SMC1A-202ENST00000375340 CREG2Q8IUH2 290 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 CRLF3Q8IUI8 442 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 SCFD1Q8WVM8 642 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 MASTLQ96GX5 879 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 CYP4F11Q9HBI6 524 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 ZNF302Q9NR11 478 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 TOPORSQ9NS56 1045 aaPredicted RBP6.95□□□□□ -1.3
SMC1A-202ENST00000375340 HESX1Q9UBX0 185 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 ATRNO75882 1429 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 CHD4Q14839 1912 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 MYH15Q9Y2K3 1946 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 CYP11B2P19099 503 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 SF3B3Q15393 1217 aaKnown RBP6.95□□□□□ -1.3
SMC1A-202ENST00000375340 QTRT2Q9H974 415 aaKnown RBP6.95□□□□□ -1.3
SMC1A-202ENST00000375340 RPF1Q9H9Y2 349 aaKnown RBP6.95□□□□□ -1.3
SMC1A-202ENST00000375340 SLC4A7Q9Y6M7 1214 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 SPATA31A1Q5TZJ5 1347 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 ABCC6O95255 1503 aa6.95□□□□□ -1.3
SMC1A-202ENST00000375340 TMED1Q13445 227 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 NBPF9Q3BBW0 867 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 ZNF507Q8TCN5 953 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 MKRN3Q13064 507 aaKnown RBP6.94□□□□□ -1.3
SMC1A-202ENST00000375340 LRGUKQ96M69 825 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 ERP44Q9BS26 406 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 hCG_2014768A0A024R1R8 64 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 NDUFB10O96000 172 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 CALCAP01258 141 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 GRAMD1BQ3KR37 738 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 SPOPLQ6IQ16 392 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 WDR59Q6PJI9 974 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 SLC47A2Q86VL8 602 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 LDHDQ86WU2 507 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 SEPT12Q8IYM1 358 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 SPIRE2Q8WWL2 714 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 ERP27Q96DN0 273 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 SNX25Q9H3E2 840 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 Q9H521 79 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 ZNF277Q9NRM2 450 aaPredicted RBP6.94□□□□□ -1.3
SMC1A-202ENST00000375340 P4HBP07237 508 aaKnown RBP6.94□□□□□ -1.3
SMC1A-202ENST00000375340 GSTA1P08263 222 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 GSTA2P09210 222 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 ORC1Q13415 861 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 TNFAIP1Q13829 316 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 ATG16L1Q676U5 607 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 MAP7D3Q8IWC1 876 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 TTC25Q96NG3 672 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 RBM15Q96T37 977 aaKnown RBP eCLIP6.94□□□□□ -1.32e-7■■□□□ 13.3
SMC1A-202ENST00000375340 PLAGL2Q9UPG8 496 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 K7ERI5 159 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 CALB1P05937 261 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 ELF1P32519 619 aa6.94□□□□□ -1.3
SMC1A-202ENST00000375340 PSMC1P62191 440 aaKnown RBP6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms