RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 ST13P5Q8NFI4 369 aaPredicted RBP4.02□□□□□ -1.77
MCF2-202ENST00000370573 CCDC12Q8WUD4 166 aaPredicted RBP4.02□□□□□ -1.77
MCF2-202ENST00000370573 GAL3ST3Q96A11 431 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 PGBD1Q96JS3 809 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 ZNF396Q96N95 335 aaPredicted RBP4.02□□□□□ -1.77
MCF2-202ENST00000370573 PTPN18Q99952 460 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 ASCC2Q9H1I8 757 aaPredicted RBP4.02□□□□□ -1.77
MCF2-202ENST00000370573 R3HDMLQ9H3Y0 253 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 CACNA2D2Q9NY47 1150 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 HOXC10Q9NYD6 342 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 BTBD7Q9P203 1132 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 CYP8B1Q9UNU6 501 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 AGTPBP1Q9UPW5 1226 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 PCDHB6Q9Y5E3 794 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 LOC285556D6RIA3 1793 aa4.02□□□□□ -1.77
MCF2-202ENST00000370573 MYH15Q9Y2K3 1946 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 CCL15-CCL14A0A0B4J2E2 113 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 BTBD19C9JJ37 291 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 TOMM70O94826 608 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 CETPP11597 493 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 GNA11P29992 359 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 HOXA13P31271 388 aaPredicted RBP4.01□□□□□ -1.77
MCF2-202ENST00000370573 NTF4P34130 210 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 CD96P40200 585 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 IRAK1P51617 712 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 MRPL12P52815 198 aaKnown RBP4.01□□□□□ -1.77
MCF2-202ENST00000370573 MCL1Q07820 350 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 BNIP3Q12983 259 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 PABPC4Q13310 644 aaKnown RBP eCLIP4.01□□□□□ -1.77
MCF2-202ENST00000370573 SLC39A14Q15043 492 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 ZNF174Q15697 407 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 CCL15Q16663 113 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 INF2Q27J81 1249 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 CYP27C1Q4G0S4 372 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 ATL3Q6DD88 541 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 LRFN4Q6PJG9 635 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 LBX2Q6XYB7 198 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 FASTKD5Q7L8L6 764 aaKnown RBP4.01□□□□□ -1.77
MCF2-202ENST00000370573 C14orf80Q86SX3 495 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 RASAL3Q86YV0 1011 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 CCAR1Q8IX12 1150 aaKnown RBP4.01□□□□□ -1.77
MCF2-202ENST00000370573 ABI1Q8IZP0 508 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 C4orf32Q8N8J7 132 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 LINC00301Q8NCQ3 95 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 SMC1BQ8NDV3 1235 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 CHAC2Q8WUX2 184 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 CUL5Q93034 780 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 MFSD3Q96ES6 412 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 PLPPR2Q96GM1 343 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 CLUHP3Q96NS8 147 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 RBPJLQ9UBG7 517 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 TCEAL9Q9UHQ7 104 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 ZNF214Q9UL59 606 aaPredicted RBP4.01□□□□□ -1.77
MCF2-202ENST00000370573 CCPG1Q9ULG6 757 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 COL11A1P12107 1806 aaPredicted RBP4.01□□□□□ -1.77
MCF2-202ENST00000370573 ABCB11O95342 1321 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 MYPNQ86TC9 1320 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 FAM155AB1AL88 458 aaPredicted RBP4.01□□□□□ -1.77
MCF2-202ENST00000370573 NFIBO00712 420 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 KATNA1O75449 491 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 ZBTB48P10074 688 aaPredicted RBP4.01□□□□□ -1.77
MCF2-202ENST00000370573 ALAS1P13196 640 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 ITIH2P19823 946 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 YY1P25490 414 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 MARCKSP29966 332 aaPredicted RBP4.01□□□□□ -1.77
MCF2-202ENST00000370573 L1CAMP32004 1257 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 GTF2A2P52657 109 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 HERVK_113P62684 666 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 NONOQ15233 471 aaKnown RBP eCLIP4.01□□□□□ -1.77
MCF2-202ENST00000370573 CPSF6Q16630 551 aaKnown RBP eCLIP4.01□□□□□ -1.77
MCF2-202ENST00000370573 RILPL1Q5EBL4 403 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 TTC38Q5R3I4 469 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 AXDND1Q5T1B0 1012 aaPredicted RBP4.01□□□□□ -1.77
MCF2-202ENST00000370573 RGMBQ6NW40 437 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 ZNF574Q6ZN55 896 aaPredicted RBP4.01□□□□□ -1.77
MCF2-202ENST00000370573 FAM43AQ8N2R8 423 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 OR6P1Q8NGX9 317 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 BICD2Q8TD16 824 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 GPT2Q8TD30 523 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 TBCKQ8TEA7 893 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 SCAND2PQ9GZW5 306 aaPredicted RBP4.01□□□□□ -1.77
MCF2-202ENST00000370573 EHMT1Q9H9B1 1298 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 TXNRD2Q9NNW7 524 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 COL20A1Q9P218 1284 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 CFAP45Q9UL16 551 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 PCDHB10Q9UN67 800 aa4.01□□□□□ -1.77
MCF2-202ENST00000370573 MRPL11Q9Y3B7 192 aaKnown RBP4.01□□□□□ -1.77
MCF2-202ENST00000370573 ELP1O95163 1332 aa4□□□□□ -1.77
MCF2-202ENST00000370573 GCOM1H8Y6P7 765 aaPredicted RBP4□□□□□ -1.77
MCF2-202ENST00000370573 PDHXO00330 501 aa4□□□□□ -1.77
MCF2-202ENST00000370573 ATP2A1O14983 1001 aa4□□□□□ -1.77
MCF2-202ENST00000370573 SPTLC2O15270 562 aa4□□□□□ -1.77
MCF2-202ENST00000370573 YEATS4O95619 227 aa4□□□□□ -1.77
MCF2-202ENST00000370573 SCGB1D2O95969 90 aa4□□□□□ -1.77
MCF2-202ENST00000370573 CFBP00751 764 aa4□□□□□ -1.77
MCF2-202ENST00000370573 POLR2MP0CAP2 368 aa4□□□□□ -1.77
MCF2-202ENST00000370573 CYP2C8P10632 490 aa4□□□□□ -1.77
MCF2-202ENST00000370573 TRAPPC10P48553 1259 aa4□□□□□ -1.77
MCF2-202ENST00000370573 HSD17B4P51659 736 aa4□□□□□ -1.77
MCF2-202ENST00000370573 OAZ1P54368 228 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms