RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 DCCP43146 1447 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 AOX1Q06278 1338 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 PITPNM2Q9BZ72 1349 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 POTEB3A0JP26 581 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 CLEC3AO75596 197 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 CD63P08962 238 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 TNFRSF8P28908 595 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 AXLP30530 894 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 CSTF2P33240 577 aaKnown RBP eCLIP4.36□□□□□ -1.71
USH2A-202ENST00000366942 TECP42680 631 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 MAP9Q49MG5 647 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 POTEBQ6S5H4 581 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 PIGWQ7Z7B1 504 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 LIX1Q8N485 282 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 AFAP1L1Q8TED9 768 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 ARHGAP45Q92619 1136 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 SPTLC3Q9NUV7 552 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 WDR35Q9P2L0 1181 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 APPL1Q9UKG1 709 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 DNPEPQ9ULA0 475 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 SNX6Q9UNH7 406 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 OAS3Q9Y6K5 1087 aaKnown RBP4.36□□□□□ -1.71
USH2A-202ENST00000366942 ADGRB2O60241 1585 aa4.36□□□□□ -1.71
USH2A-202ENST00000366942 AP3B1O00203 1094 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 CACNB4O00305 520 aaPredicted RBP4.35□□□□□ -1.71
USH2A-202ENST00000366942 OPHN1O60890 802 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 KRT33AO76009 404 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 ANXA5P08758 320 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 POLR2EP19388 210 aaKnown RBP4.35□□□□□ -1.71
USH2A-202ENST00000366942 SMARCA1P28370 1054 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 DGKKQ5KSL6 1271 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 FAM83BQ5T0W9 1011 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 C6orf118Q5T5N4 469 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 ZNF544Q6NX49 715 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 TLK2Q86UE8 772 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 KSR1Q8IVT5 923 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 RCOR2Q8IZ40 523 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 UBXN4Q92575 508 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 KCNJ9Q92806 393 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 CRELD1Q96HD1 420 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 KIFC3Q9BVG8 833 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 TIPINQ9BVW5 301 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 TSGA10Q9BZW7 698 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 NMRK1Q9NWW6 199 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 UBQLN1Q9UMX0 589 aaKnown RBP4.35□□□□□ -1.71
USH2A-202ENST00000366942 AXIN2Q9Y2T1 843 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 SF3B1O75533 1304 aaKnown RBP eCLIP4.35□□□□□ -1.71
USH2A-202ENST00000366942 RHPN2P1A8MT19 583 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 TEX28O15482 410 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 IVLP07476 585 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 CDK4P11802 303 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 UQCRBP14927 111 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 PPARAQ07869 468 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 SERPINA13PQ6UXR4 307 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 DGLUCYQ7Z3D6 616 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 GLYCTKQ8IVS8 523 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 MFN1Q8IWA4 741 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 TEX29Q8N6K0 151 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 L3MBTL4Q8NA19 623 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 TBC1D16Q8TBP0 767 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 PAWRQ96IZ0 340 aaKnown RBP4.35□□□□□ -1.71
USH2A-202ENST00000366942 VPS54Q9P1Q0 977 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 ATP6V1HQ9UI12 483 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 RABGEF1Q9UJ41 708 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 TUBE1Q9UJT0 475 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 MED14O60244 1454 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 UBE4BO95155 1302 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 ZNF532Q9HCE3 1301 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 SYNJ2BP-COX16A0A087WUM0 186 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 LOC102724159A0A0B4J2E5 919 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 H0Y626 953 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 SORBS3O60504 671 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 SLC4A1P02730 911 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 POLR2LP62875 67 aaKnown RBP4.35□□□□□ -1.71
USH2A-202ENST00000366942 IL1RL1Q01638 556 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 PWP2Q15269 919 aaKnown RBP4.35□□□□□ -1.71
USH2A-202ENST00000366942 SKIDA1Q1XH10 827 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 VWA2Q5GFL6 755 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 RHPN2Q8IUC4 686 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 HDAC7Q8WUI4 952 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 TSR2Q969E8 191 aaKnown RBP4.35□□□□□ -1.71
USH2A-202ENST00000366942 TTC17Q96AE7 1141 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 MYL10Q9BUA6 226 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 COX16Q9P0S2 106 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 SLC39A10Q9ULF5 831 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 ERVW-1Q9UQF0 538 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 PCDHA10Q9Y5I2 948 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 PNPLA6Q8IY17 1366 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 CEP170Q5SW79 1584 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 ZSCAN12O43309 604 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 ATP9BO43861 1147 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 COBLO75128 1261 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 UCNP55089 124 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 KCNQ4P56696 695 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 RBP5P82980 135 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 PCBP1Q15365 356 aaKnown RBP eCLIP4.35□□□□□ -1.71
USH2A-202ENST00000366942 TOMM20Q15388 145 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 PPP2R5EQ16537 467 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 RWDD4Q6NW29 188 aaKnown RBP4.35□□□□□ -1.71
USH2A-202ENST00000366942 CTR9Q6PD62 1173 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms