RNA–Protein interactions for RNA: ENST00000354757.4

PCDHB11-201, Transcript of protocadherin beta 11, humanhuman

APPRIS P1 BASIC

Gene PCDHB11, Length 4,198 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB11-201ENST00000354757 ATP8B1O43520 1251 aa13.2□□□□□ -0.3
PCDHB11-201ENST00000354757 GJB1P08034 283 aa13.2□□□□□ -0.3
PCDHB11-201ENST00000354757 ATF2P15336 505 aa13.2□□□□□ -0.3
PCDHB11-201ENST00000354757 UBA1P22314 1058 aaKnown RBP13.2□□□□□ -0.3
PCDHB11-201ENST00000354757 BASP1P80723 227 aaKnown RBP13.2□□□□□ -0.3
PCDHB11-201ENST00000354757 RHOT2Q8IXI1 618 aa13.2□□□□□ -0.3
PCDHB11-201ENST00000354757 C4orf19Q8IY42 314 aa13.2□□□□□ -0.3
PCDHB11-201ENST00000354757 OSBPL9Q96SU4 736 aa13.2□□□□□ -0.3
PCDHB11-201ENST00000354757 FNDC3AQ9Y2H6 1198 aaKnown RBP13.2□□□□□ -0.3
PCDHB11-201ENST00000354757 TBC1D12O60347 775 aa13.19□□□□□ -0.3
PCDHB11-201ENST00000354757 MAP2K2P36507 400 aa13.19□□□□□ -0.3
PCDHB11-201ENST00000354757 BEX3Q00994 111 aa13.19□□□□□ -0.3
PCDHB11-201ENST00000354757 FAM118BQ9BPY3 351 aa13.19□□□□□ -0.3
PCDHB11-201ENST00000354757 ABCB6Q9NP58 842 aa13.19□□□□□ -0.3
PCDHB11-201ENST00000354757 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.19□□□□□ -0.3
PCDHB11-201ENST00000354757 HEY1Q9Y5J3 304 aa13.19□□□□□ -0.3
PCDHB11-201ENST00000354757 KDM3BQ7LBC6 1761 aa13.19□□□□□ -0.3
PCDHB11-201ENST00000354757 ZBBXA8MT70 800 aa13.19□□□□□ -0.3
PCDHB11-201ENST00000354757 EIF3DO15371 548 aaKnown RBP eCLIP13.19□□□□□ -0.3
PCDHB11-201ENST00000354757 PRPSAP2O60256 369 aa13.19□□□□□ -0.3
PCDHB11-201ENST00000354757 TADA3O75528 432 aa13.19□□□□□ -0.3
PCDHB11-201ENST00000354757 PSMD10O75832 226 aa13.19□□□□□ -0.3
PCDHB11-201ENST00000354757 ZRANB2O95218 330 aaKnown RBP eCLIP13.19□□□□□ -0.3
PCDHB11-201ENST00000354757 HOXD10P28358 340 aa13.19□□□□□ -0.3
PCDHB11-201ENST00000354757 GCLCP48506 637 aaPredicted RBP13.19□□□□□ -0.3
PCDHB11-201ENST00000354757 CACNB2Q08289 660 aaPredicted RBP13.19□□□□□ -0.3
PCDHB11-201ENST00000354757 HP1BP3Q5SSJ5 553 aaPredicted RBP13.19□□□□□ -0.3
PCDHB11-201ENST00000354757 C10orf76Q5T2E6 689 aa13.19□□□□□ -0.3
PCDHB11-201ENST00000354757 FAM102AQ5T9C2 384 aaPredicted RBP13.19□□□□□ -0.3
PCDHB11-201ENST00000354757 FGFBP2Q9BYJ0 223 aa13.19□□□□□ -0.3
PCDHB11-201ENST00000354757 STK33Q9BYT3 514 aa13.19□□□□□ -0.3
PCDHB11-201ENST00000354757 COL20A1Q9P218 1284 aa13.19□□□□□ -0.3
PCDHB11-201ENST00000354757 NPTXRO95502 500 aa13.19□□□□□ -0.3
PCDHB11-201ENST00000354757 RWDD2BP57060 319 aa13.19□□□□□ -0.3
PCDHB11-201ENST00000354757 MTM1Q13496 603 aa13.19□□□□□ -0.3
PCDHB11-201ENST00000354757 TMEM119Q4V9L6 283 aa13.19□□□□□ -0.3
PCDHB11-201ENST00000354757 ARFGAP2Q8N6H7 521 aa13.19□□□□□ -0.3
PCDHB11-201ENST00000354757 RBBP8NLQ8NC74 664 aaPredicted RBP13.19□□□□□ -0.3
PCDHB11-201ENST00000354757 TRIM11Q96F44 468 aa13.19□□□□□ -0.3
PCDHB11-201ENST00000354757 ERGIC2Q96RQ1 377 aa13.19□□□□□ -0.3
PCDHB11-201ENST00000354757 POC1B-GALNT4F8VUJ3 575 aa13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 SLC16A3O15427 465 aaKnown RBP13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 STK10O94804 968 aaKnown RBP13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 SCP2P22307 547 aa13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 PON1P27169 355 aa13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 HOXA7P31268 230 aaPredicted RBP13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 ATN1P54259 1190 aaPredicted RBP13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 MMS22LQ6ZRQ5 1243 aa13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 SH3RF1Q7Z6J0 888 aa13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 BCAS4Q8TDM0 211 aa13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 PACSIN1Q9BY11 444 aa13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 NMRK2Q9NPI5 230 aa13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 LRRC37A3O60309 1634 aa13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 C5P01031 1676 aa13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 AHDC1Q5TGY3 1603 aaPredicted RBP13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 LOC102724159A0A0B4J2E5 919 aa13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 MAGEB2O15479 319 aa13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 USP2O75604 605 aaPredicted RBP13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 NPM3O75607 178 aaKnown RBP13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 ITGB3P05106 788 aa13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 SAT1P21673 171 aa13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 RFC5P40937 340 aa13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 ITGB3BPQ13352 177 aaPredicted RBP13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 PWP2Q15269 919 aaKnown RBP13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 ZRSR2Q15696 482 aaKnown RBP13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 UGCGQ16739 394 aa13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 MAP7D3Q8IWC1 876 aa13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 PDGFCQ9NRA1 345 aa13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 NKIRAS1Q9NYS0 192 aa13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 RPS6KA5O75582 802 aa13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 ZBTB16Q05516 673 aa13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 SEMA3FQ13275 785 aa13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 TMEM132DQ14C87 1099 aa13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 MICALCLQ6ZW33 695 aa13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 PALM2Q8IXS6 379 aa13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 C4orf32Q8N8J7 132 aa13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 MAIP1Q8WWC4 291 aa13.18□□□□□ -0.3
PCDHB11-201ENST00000354757 GLTPD2A6NH11 291 aa13.17□□□□□ -0.3
PCDHB11-201ENST00000354757 KLRC4O43908 158 aa13.17□□□□□ -0.3
PCDHB11-201ENST00000354757 SLC4A1P02730 911 aa13.17□□□□□ -0.3
PCDHB11-201ENST00000354757 TFRCP02786 760 aaKnown RBP13.17□□□□□ -0.3
PCDHB11-201ENST00000354757 SLC12A3P55017 1021 aa13.17□□□□□ -0.3
PCDHB11-201ENST00000354757 DHX9Q08211 1270 aaKnown RBP13.17□□□□□ -0.3
PCDHB11-201ENST00000354757 SYCP2LQ5T4T6 812 aa13.17□□□□□ -0.3
PCDHB11-201ENST00000354757 BTNL9Q6UXG8 535 aa13.17□□□□□ -0.3
PCDHB11-201ENST00000354757 ELOA2Q8IYF1 753 aaPredicted RBP13.17□□□□□ -0.3
PCDHB11-201ENST00000354757 ZNF446Q9NWS9 450 aa13.17□□□□□ -0.3
PCDHB11-201ENST00000354757 TBK1Q9UHD2 729 aa13.17□□□□□ -0.3
PCDHB11-201ENST00000354757 PLAGL2Q9UPG8 496 aa13.17□□□□□ -0.3
PCDHB11-201ENST00000354757 PASKQ96RG2 1323 aa13.17□□□□□ -0.3
PCDHB11-201ENST00000354757 ARFGEF2Q9Y6D5 1785 aa13.17□□□□□ -0.3
PCDHB11-201ENST00000354757 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.17□□□□□ -0.3
PCDHB11-201ENST00000354757 SRLQ86TD4 932 aa13.17□□□□□ -0.3
PCDHB11-201ENST00000354757 ETNPPLQ8TBG4 499 aa13.17□□□□□ -0.3
PCDHB11-201ENST00000354757 MICAL1Q8TDZ2 1067 aa13.17□□□□□ -0.3
PCDHB11-201ENST00000354757 ZBTB10Q96DT7 871 aa13.17□□□□□ -0.3
PCDHB11-201ENST00000354757 ZBED2Q9BTP6 218 aa13.17□□□□□ -0.3
PCDHB11-201ENST00000354757 TAF1DQ9H5J8 278 aaPredicted RBP13.17□□□□□ -0.3
PCDHB11-201ENST00000354757 ACP6Q9NPH0 428 aa13.17□□□□□ -0.3
PCDHB11-201ENST00000354757 ROBO3Q96MS0 1386 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms