RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 DHX9Q08211 1270 aaKnown RBP11.12□□□□□ -0.63
LIMA1-201ENST00000341247 EMC2Q15006 297 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 WDR78Q5VTH9 848 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 RASGEF1CQ8N431 466 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 ZNF564Q8TBZ8 553 aaPredicted RBP11.12□□□□□ -0.63
LIMA1-201ENST00000341247 WHAMMQ8TF30 809 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 SH3GL2Q99962 352 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 TARS2Q9BW92 718 aaKnown RBP11.12□□□□□ -0.63
LIMA1-201ENST00000341247 LRRC4CQ9HCJ2 640 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 MAP3K20Q9NYL2 800 aaKnown RBP11.12□□□□□ -0.63
LIMA1-201ENST00000341247 TRPC6Q9Y210 931 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 TRIM66O15016 1216 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 DGAT1O75907 488 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 IRAK1P51617 712 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 PLTPP55058 493 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 DR1Q01658 176 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 GNPTABQ3T906 1256 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 RHOT2Q8IXI1 618 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 ASAP3Q8TDY4 903 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 ZNF516Q92618 1163 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 RUBCNQ92622 972 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 MTFR1LQ9H019 292 aa11.12□□□□□ -0.63
LIMA1-201ENST00000341247 MKI67P46013 3256 aaKnown RBP11.11□□□□□ -0.63
LIMA1-201ENST00000341247 CCDC188H7C350 402 aa11.11□□□□□ -0.63
LIMA1-201ENST00000341247 ATP4AP20648 1035 aa11.11□□□□□ -0.63
LIMA1-201ENST00000341247 CCT5P48643 541 aa11.11□□□□□ -0.63
LIMA1-201ENST00000341247 DRP2Q13474 957 aa11.11□□□□□ -0.63
LIMA1-201ENST00000341247 UAP1Q16222 522 aaPredicted RBP11.11□□□□□ -0.63
LIMA1-201ENST00000341247 MIS18BP1Q6P0N0 1132 aa11.11□□□□□ -0.63
LIMA1-201ENST00000341247 ABHD15Q6UXT9 468 aa11.11□□□□□ -0.63
LIMA1-201ENST00000341247 GADL1Q6ZQY3 521 aa11.11□□□□□ -0.63
LIMA1-201ENST00000341247 SHC3Q92529 594 aa11.11□□□□□ -0.63
LIMA1-201ENST00000341247 CALR3Q96L12 384 aaKnown RBP11.11□□□□□ -0.63
LIMA1-201ENST00000341247 ZNF302Q9NR11 478 aa11.11□□□□□ -0.63
LIMA1-201ENST00000341247 CWC15Q9P013 229 aaKnown RBP11.11□□□□□ -0.63
LIMA1-201ENST00000341247 GOLGA6L10A0A0M3HER8 536 aa11.11□□□□□ -0.63
LIMA1-201ENST00000341247 CES2O00748 559 aa11.11□□□□□ -0.63
LIMA1-201ENST00000341247 P4HA2O15460 535 aa11.11□□□□□ -0.63
LIMA1-201ENST00000341247 PYGMP11217 842 aa11.11□□□□□ -0.63
LIMA1-201ENST00000341247 RFX1P22670 979 aa11.11□□□□□ -0.63
LIMA1-201ENST00000341247 ZBTB33Q86T24 672 aa11.11□□□□□ -0.63
LIMA1-201ENST00000341247 C10orf67Q8IYJ2 551 aa11.11□□□□□ -0.63
LIMA1-201ENST00000341247 MAGOHBQ96A72 148 aaKnown RBP11.11□□□□□ -0.63
LIMA1-201ENST00000341247 ST6GALNAC4Q9H4F1 302 aa11.11□□□□□ -0.63
LIMA1-201ENST00000341247 CNOT8Q9UFF9 292 aaKnown RBP11.11□□□□□ -0.63
LIMA1-201ENST00000341247 CFHP08603 1231 aa11.11□□□□□ -0.63
LIMA1-201ENST00000341247 STRN3Q13033 797 aa11.11□□□□□ -0.63
LIMA1-201ENST00000341247 SNX1Q13596 522 aa11.11□□□□□ -0.63
LIMA1-201ENST00000341247 STXBP2Q15833 593 aa11.11□□□□□ -0.63
LIMA1-201ENST00000341247 MOB2Q70IA6 237 aa11.11□□□□□ -0.63
LIMA1-201ENST00000341247 TRIM50Q86XT4 487 aa11.11□□□□□ -0.63
LIMA1-201ENST00000341247 ZDHHC14Q8IZN3 488 aa11.11□□□□□ -0.63
LIMA1-201ENST00000341247 UBL4BQ8N7F7 174 aa11.11□□□□□ -0.63
LIMA1-201ENST00000341247 MCPH1Q8NEM0 835 aa11.11□□□□□ -0.63
LIMA1-201ENST00000341247 DEPTORQ8TB45 409 aa11.11□□□□□ -0.63
LIMA1-201ENST00000341247 BCAS4Q8TDM0 211 aa11.11□□□□□ -0.63
LIMA1-201ENST00000341247 ZBTB10Q96DT7 871 aa11.11□□□□□ -0.63
LIMA1-201ENST00000341247 FAM118BQ9BPY3 351 aa11.11□□□□□ -0.63
LIMA1-201ENST00000341247 PTPRJQ12913 1337 aa11.11□□□□□ -0.63
LIMA1-201ENST00000341247 TTLL13PA6NNM8 815 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 SUPT20HL2P0C7V6 817 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 PIK3CAP42336 1068 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 SSR1P43307 286 aaKnown RBP11.1□□□□□ -0.63
LIMA1-201ENST00000341247 SUPT20HL1Q3ZLR7 823 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 CDR2LQ86X02 465 aaPredicted RBP11.1□□□□□ -0.63
LIMA1-201ENST00000341247 TCHPQ9BT92 498 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 TIPINQ9BVW5 301 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 C1orf112Q9NSG2 853 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 HOXC10Q9NYD6 342 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 GOLGA6L10A6NI86 522 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 K7ERI5 159 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 GJB6O95452 261 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 PGK2P07205 417 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 CUL1Q13616 776 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 VGLL4Q14135 290 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 ODF2Q5BJF6 829 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 APOBEC3FQ8IUX4 373 aaKnown RBP11.1□□□□□ -0.63
LIMA1-201ENST00000341247 ZSWIM1Q9BR11 485 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 HAPLN2Q9GZV7 340 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 CARD9Q9H257 536 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 BTBD7Q9P203 1132 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 FBXO40Q9UH90 709 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 ZNF112Q9UJU3 913 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 ANAPC7Q9UJX3 599 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 AGO2Q9UKV8 859 aaKnown RBP11.1□□□□□ -0.63
LIMA1-201ENST00000341247 DAAM1Q9Y4D1 1078 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 WDR90Q96KV7 1748 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 SPATA31C2B4DYI2 1134 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 C19orf81C9J6K1 198 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 ADM5C9JUS6 153 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 DDNO94850 711 aaPredicted RBP11.1□□□□□ -0.63
LIMA1-201ENST00000341247 HLA-DRAP01903 254 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 EDN1P05305 212 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 GLRA2P23416 452 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 HSPA9P38646 679 aaKnown RBP11.1□□□□□ -0.63
LIMA1-201ENST00000341247 XKR3Q5GH77 459 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 SEL1L2Q5TEA6 688 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 FMNL3Q8IVF7 1028 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 SPIRE2Q8WWL2 714 aa11.1□□□□□ -0.63
LIMA1-201ENST00000341247 MFSD14AQ96MC6 490 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms