RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 GJC2Q5T442 439 aaPredicted RBP10.85□□□□□ -0.67
USP54-201ENST00000339859 ABRAQ8N0Z2 381 aa10.85□□□□□ -0.67
USP54-201ENST00000339859 AFAP1L2Q8N4X5 818 aa10.85□□□□□ -0.67
USP54-201ENST00000339859 MKNK1Q9BUB5 465 aa10.85□□□□□ -0.67
USP54-201ENST00000339859 TMEM8AQ9HCN3 771 aa10.85□□□□□ -0.67
USP54-201ENST00000339859 TCP1P17987 556 aaKnown RBP10.85□□□□□ -0.67
USP54-201ENST00000339859 SDC4P31431 198 aa10.85□□□□□ -0.67
USP54-201ENST00000339859 EIF4A3P38919 411 aaKnown RBP10.85□□□□□ -0.67
USP54-201ENST00000339859 ADCY8P40145 1251 aa10.85□□□□□ -0.67
USP54-201ENST00000339859 PDXDC1Q6P996 788 aa10.85□□□□□ -0.67
USP54-201ENST00000339859 CPB2Q96IY4 423 aa10.85□□□□□ -0.67
USP54-201ENST00000339859 P4HA2O15460 535 aa10.85□□□□□ -0.67
USP54-201ENST00000339859 IFNB1P01574 187 aa10.85□□□□□ -0.67
USP54-201ENST00000339859 PLCB4Q15147 1175 aa10.85□□□□□ -0.67
USP54-201ENST00000339859 ELOA2Q8IYF1 753 aaPredicted RBP10.85□□□□□ -0.67
USP54-201ENST00000339859 CCDC68Q9H2F9 335 aa10.85□□□□□ -0.67
USP54-201ENST00000339859 FAN1Q9Y2M0 1017 aa10.85□□□□□ -0.67
USP54-201ENST00000339859 THP07101 528 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 SMIM10L2AP0DMW4 78 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 SMIM10L2BP0DMW5 78 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 GUCY2CP25092 1073 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 EPHB1P54762 984 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 LMBRD2Q68DH5 695 aaPredicted RBP10.84□□□□□ -0.67
USP54-201ENST00000339859 PALM2Q8IXS6 379 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 HSPH1Q92598 858 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 PANX2Q96RD6 677 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 MED15Q96RN5 788 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 OSMRQ99650 979 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 ZNF148Q9UQR1 794 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 TLL2Q9Y6L7 1015 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 A0A087WZ62 844 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 GIPC1O14908 333 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 EFCAB14O75071 495 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 TRIM49P0CI25 452 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 TRIM49CP0CI26 452 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 ATF2P15336 505 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 PTGER2P43116 358 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 ACADSBP45954 432 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 VSIG10LQ86VR7 867 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 FDXACB1Q9BRP7 624 aaPredicted RBP10.84□□□□□ -0.67
USP54-201ENST00000339859 TARS2Q9BW92 718 aaKnown RBP10.84□□□□□ -0.67
USP54-201ENST00000339859 ZC3H11AO75152 810 aaKnown RBP eCLIP10.84□□□□□ -0.677e-6■■■□□ 18.7
USP54-201ENST00000339859 ALDH2P05091 517 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 MCF2P10911 925 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 LCP1P13796 627 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 NTRK3Q16288 839 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 WHAMMP3Q1A5X7 153 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.84□□□□□ -0.67
USP54-201ENST00000339859 ARHGEF18Q6ZSZ5 1173 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 RASGRP2Q7LDG7 609 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 PASD1Q8IV76 773 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 P3H4Q92791 437 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 FTHL17Q9BXU8 183 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 HOMER3Q9NSC5 361 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 SGK1O00141 431 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 MAP2K2P36507 400 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 PSMC1P62191 440 aaKnown RBP10.84□□□□□ -0.67
USP54-201ENST00000339859 MRPS6P82932 125 aaKnown RBP10.84□□□□□ -0.67
USP54-201ENST00000339859 BTG3Q14201 252 aaPredicted RBP10.84□□□□□ -0.67
USP54-201ENST00000339859 DRAP1Q14919 205 aaPredicted RBP10.84□□□□□ -0.67
USP54-201ENST00000339859 PCBP1Q15365 356 aaKnown RBP eCLIP10.84□□□□□ -0.67
USP54-201ENST00000339859 ZC2HC1CQ53FD0 456 aaPredicted RBP10.84□□□□□ -0.67
USP54-201ENST00000339859 EFHC2Q5JST6 749 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 TDRD10Q5VZ19 366 aaKnown RBP10.84□□□□□ -0.67
USP54-201ENST00000339859 ANKRD40Q6AI12 368 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 RASAL3Q86YV0 1011 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 L3MBTL3Q96JM7 780 aaPredicted RBP10.84□□□□□ -0.67
USP54-201ENST00000339859 PSMB7Q99436 277 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 KRT12Q99456 494 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 CALN1Q9BXU9 219 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 PRG3Q9Y2Y8 225 aaPredicted RBP10.84□□□□□ -0.67
USP54-201ENST00000339859 ATRNL1Q5VV63 1379 aa10.84□□□□□ -0.67
USP54-201ENST00000339859 TLR2O60603 784 aa10.83□□□□□ -0.67
USP54-201ENST00000339859 CA4P22748 312 aa10.83□□□□□ -0.67
USP54-201ENST00000339859 PLPPR4Q7Z2D5 763 aa10.83□□□□□ -0.67
USP54-201ENST00000339859 CCHCR1Q8TD31 782 aa10.83□□□□□ -0.67
USP54-201ENST00000339859 HPDLQ96IR7 371 aa10.83□□□□□ -0.67
USP54-201ENST00000339859 SELENOSQ9BQE4 189 aa10.83□□□□□ -0.67
USP54-201ENST00000339859 NT5C1AQ9BXI3 368 aa10.83□□□□□ -0.67
USP54-201ENST00000339859 TRIM31Q9BZY9 425 aa10.83□□□□□ -0.67
USP54-201ENST00000339859 ZCCHC17Q9NP64 241 aaKnown RBP10.83□□□□□ -0.67
USP54-201ENST00000339859 NGRNQ9NPE2 291 aaKnown RBP10.83□□□□□ -0.67
USP54-201ENST00000339859 IP6K2Q9UHH9 426 aa10.83□□□□□ -0.67
USP54-201ENST00000339859 SH3BP1Q9Y3L3 701 aa10.83□□□□□ -0.67
USP54-201ENST00000339859 PCDHA13Q9Y5I0 950 aa10.83□□□□□ -0.67
USP54-201ENST00000339859 GARTP22102 1010 aa10.83□□□□□ -0.68
USP54-201ENST00000339859 GNL1P36915 607 aaPredicted RBP10.83□□□□□ -0.68
USP54-201ENST00000339859 DARS2Q6PI48 645 aaKnown RBP10.83□□□□□ -0.68
USP54-201ENST00000339859 PHLDB2Q86SQ0 1253 aa10.83□□□□□ -0.68
USP54-201ENST00000339859 LRRC8AQ8IWT6 810 aa10.83□□□□□ -0.68
USP54-201ENST00000339859 KLK14Q9P0G3 267 aa10.83□□□□□ -0.68
USP54-201ENST00000339859 UBIAD1Q9Y5Z9 338 aa10.83□□□□□ -0.68
USP54-201ENST00000339859 NPTX2P47972 431 aa10.83□□□□□ -0.68
USP54-201ENST00000339859 MTMR3Q13615 1198 aa10.83□□□□□ -0.68
USP54-201ENST00000339859 C12orf42Q96LP6 360 aa10.83□□□□□ -0.68
USP54-201ENST00000339859 ZWILCHQ9H900 591 aa10.83□□□□□ -0.68
USP54-201ENST00000339859 TJP2Q9UDY2 1190 aa10.83□□□□□ -0.68
USP54-201ENST00000339859 PASKQ96RG2 1323 aa10.83□□□□□ -0.68
USP54-201ENST00000339859 PGK1P00558 417 aa10.83□□□□□ -0.68
USP54-201ENST00000339859 SOX5P35711 763 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms