RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 CEP55Q53EZ4 464 aa10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 PI16Q6UXB8 463 aa10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 HDLBPQ00341 1268 aaKnown RBP10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 PTPROQ16827 1216 aa10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 FAM98CQ17RN3 349 aaKnown RBP10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 DUOXA2Q1HG44 320 aa10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 LPAR1Q92633 364 aa10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 VCPKMTQ9H867 229 aa10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 SEC31BQ9NQW1 1179 aa10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 SMYD2Q9NRG4 433 aa10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 CYP27B1O15528 508 aa10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 IFNA8P32881 189 aa10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 TMEM270Q6UE05 265 aa10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 HEXIM2Q96MH2 286 aaKnown RBP10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 ZWILCHQ9H900 591 aa10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 PARP4Q9UKK3 1724 aaKnown RBP10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 GOLGA8SH3BPF8 625 aa10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 APOL1O14791 398 aa10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 NOP14P78316 857 aaKnown RBP10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 EFL1Q7Z2Z2 1120 aaKnown RBP10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 OXER1Q8TDS5 423 aa10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 NSUN6Q8TEA1 469 aaKnown RBP10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 TSSK1BQ9BXA7 367 aa10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 USP21Q9UK80 565 aa10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 FRMD3A2A2Y4 597 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 GZMAP12544 262 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 CHN1P15882 459 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 CDH2P19022 906 aaPredicted RBP10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 TTC17Q96AE7 1141 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 PRMT1Q99873 361 aaKnown RBP10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 MAP3K20Q9NYL2 800 aaKnown RBP10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 AKT3Q9Y243 479 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 MYO10Q9HD67 2058 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 C16orf96A6NNT2 1141 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 POTECB2RU33 542 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 KRT4P19013 534 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 CCNJLQ8IV13 435 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 ZBED8Q8IZ13 594 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 FSD1LQ9BXM9 530 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 GOLGA8IPA6NC78 632 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 CDC25AP30304 524 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 ITKQ08881 620 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 MYBPC2Q14324 1141 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 C12orf60Q5U649 245 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 C11orf63Q6NUN7 778 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 EIF2AK1Q9BQI3 630 aaKnown RBP10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 TRAF3IP3Q9Y228 551 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 EFTUD2Q15029 972 aaKnown RBP eCLIP10.87□□□□□ -0.678e-7■■■■□ 19.8
CCDC88A-202ENST00000336838 ARHGEF26Q96DR7 871 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 THOC1Q96FV9 657 aaKnown RBP10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 MAGEB18Q96M61 343 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 DGAT1O75907 488 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 PGM1P36871 562 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 ADGRF4Q8IZF3 695 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 SLC35G2Q8TBE7 412 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 OSBPL8Q9BZF1 889 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 SNX5Q9Y5X3 404 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 GNAT1P11488 350 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 FMR1Q06787 632 aaKnown RBP eCLIP10.87□□□□□ -0.672e-10■□□□□ 9.9
CCDC88A-202ENST00000336838 SH3RF3Q8TEJ3 882 aaPredicted RBP10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 RBM15Q96T37 977 aaKnown RBP eCLIP10.87□□□□□ -0.672e-12■□□□□ 9
CCDC88A-202ENST00000336838 POTEB3A0JP26 581 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 TOMM70O94826 608 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 CSF1RP07333 972 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 SCNN1DP51172 638 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 MED21Q13503 144 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 SLC27A3Q5K4L6 730 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 CDKAL1Q5VV42 579 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 POTEBQ6S5H4 581 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 NAT9Q9BTE0 207 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 CXorf56Q9H5V9 222 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 GAS2O43903 313 aaKnown RBP10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 RPS6KA5O75582 802 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 CNTFP26441 200 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 PDIA2Q13087 525 aaKnown RBP10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 TMED1Q13445 227 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 EPHA7Q15375 998 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 TRIM67Q6ZTA4 783 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 HOXC10Q9NYD6 342 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 GINS2Q9Y248 185 aa10.87□□□□□ -0.67
CCDC88A-202ENST00000336838 IGSF9BQ9UPX0 1349 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 IL18RAPO95256 599 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 DYNLT1P63172 113 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 FAR2Q96K12 515 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 CCDC134Q9H6E4 229 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 ITGB1BP2Q9UKP3 347 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 TM9SF1O15321 606 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 MXD4Q14582 209 aaPredicted RBP10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 ASPSCR1Q9BZE9 553 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 PCDHB2Q9Y5E7 798 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 PPP1R3GB7ZBB8 358 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 MEIS1O00470 390 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 ARSEP51690 589 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 MAPK7Q13164 816 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 KRR1Q13601 381 aaKnown RBP10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 FOXR2Q6PJQ5 311 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 EFHBQ8N7U6 833 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 RSAD1Q9HA92 442 aa10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 RBM12Q9NTZ6 932 aaKnown RBP10.86□□□□□ -0.67
CCDC88A-202ENST00000336838 CNOT7Q9UIV1 285 aaKnown RBP10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms