RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 POTEJP0CG39 1038 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 COILP38432 576 aaPredicted RBP11.26□□□□□ -0.61
COL3A1-202ENST00000317840 NOVP48745 357 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 HMGCS2P54868 508 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 PPP3CAQ08209 521 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 GPR162Q16538 588 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 USP37Q86T82 979 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 SLC47A2Q86VL8 602 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 VSIG1Q86XK7 387 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 KIRREL3Q8IZU9 778 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 FAM151AQ8WW52 585 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 POMGNT1Q8WZA1 660 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 DDX23Q9BUQ8 820 aaKnown RBP11.26□□□□□ -0.61
COL3A1-202ENST00000317840 ANAPC5Q9UJX4 755 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 PLIN4Q96Q06 1357 aa11.26□□□□□ -0.61
COL3A1-202ENST00000317840 COL16A1Q07092 1604 aaPredicted RBP11.25□□□□□ -0.61
COL3A1-202ENST00000317840 TCRBV7S2A1N4TA0A589 114 aa11.25□□□□□ -0.61
COL3A1-202ENST00000317840 HP1BP3Q5SSJ5 553 aaPredicted RBP11.25□□□□□ -0.61
COL3A1-202ENST00000317840 KAZNQ674X7 775 aa11.25□□□□□ -0.61
COL3A1-202ENST00000317840 ATP8B4Q8TF62 1192 aa11.25□□□□□ -0.61
COL3A1-202ENST00000317840 P3H4Q92791 437 aa11.25□□□□□ -0.61
COL3A1-202ENST00000317840 IFT74Q96LB3 600 aa11.25□□□□□ -0.61
COL3A1-202ENST00000317840 TCHPQ9BT92 498 aa11.25□□□□□ -0.61
COL3A1-202ENST00000317840 ADAM33Q9BZ11 813 aa11.25□□□□□ -0.61
COL3A1-202ENST00000317840 GPRC5CQ9NQ84 441 aa11.25□□□□□ -0.61
COL3A1-202ENST00000317840 GEMIN8Q9NWZ8 242 aaKnown RBP11.25□□□□□ -0.61
COL3A1-202ENST00000317840 ATXN2Q99700 1313 aaKnown RBP11.25□□□□□ -0.61
COL3A1-202ENST00000317840 KRT15P19012 456 aa11.25□□□□□ -0.61
COL3A1-202ENST00000317840 LACTBP83111 547 aaPredicted RBP11.25□□□□□ -0.61
COL3A1-202ENST00000317840 PPATQ06203 517 aa11.25□□□□□ -0.61
COL3A1-202ENST00000317840 DEFB129Q9H1M3 183 aa11.25□□□□□ -0.61
COL3A1-202ENST00000317840 GGA2Q9UJY4 613 aa11.25□□□□□ -0.61
COL3A1-202ENST00000317840 TMEM150BA6NC51 233 aa11.25□□□□□ -0.61
COL3A1-202ENST00000317840 SRRM3A6NNA2 597 aaPredicted RBP11.25□□□□□ -0.61
COL3A1-202ENST00000317840 ENTPD3O75355 529 aa11.25□□□□□ -0.61
COL3A1-202ENST00000317840 RARAP10276 462 aa11.25□□□□□ -0.61
COL3A1-202ENST00000317840 TNNI1P19237 187 aa11.25□□□□□ -0.61
COL3A1-202ENST00000317840 SSTR3P32745 418 aaPredicted RBP11.25□□□□□ -0.61
COL3A1-202ENST00000317840 CPNE8Q86YQ8 564 aa11.25□□□□□ -0.61
COL3A1-202ENST00000317840 ANKRD35Q8N283 1001 aa11.25□□□□□ -0.61
COL3A1-202ENST00000317840 PGM2Q96G03 612 aa11.25□□□□□ -0.61
COL3A1-202ENST00000317840 POC1B-GALNT4F8VUJ3 575 aa11.24□□□□□ -0.61
COL3A1-202ENST00000317840 WNT10BO00744 389 aa11.24□□□□□ -0.61
COL3A1-202ENST00000317840 HNRNPDLO14979 420 aaKnown RBP11.24□□□□□ -0.61
COL3A1-202ENST00000317840 RIPK2O43353 540 aa11.24□□□□□ -0.61
COL3A1-202ENST00000317840 IFNB1P01574 187 aa11.24□□□□□ -0.61
COL3A1-202ENST00000317840 RARGP13631 454 aa11.24□□□□□ -0.61
COL3A1-202ENST00000317840 VCAM1P19320 739 aa11.24□□□□□ -0.61
COL3A1-202ENST00000317840 CTNNA2P26232 953 aa11.24□□□□□ -0.61
COL3A1-202ENST00000317840 NBPF12Q5TAG4 269 aaPredicted RBP11.24□□□□□ -0.61
COL3A1-202ENST00000317840 C6orf89Q6UWU4 347 aa11.24□□□□□ -0.61
COL3A1-202ENST00000317840 PAXIP1Q6ZW49 1069 aaPredicted RBP11.24□□□□□ -0.61
COL3A1-202ENST00000317840 SULF1Q8IWU6 871 aa11.24□□□□□ -0.61
COL3A1-202ENST00000317840 ZC3H3Q8IXZ2 948 aaKnown RBP11.24□□□□□ -0.61
COL3A1-202ENST00000317840 C9orf72Q96LT7 481 aa11.24□□□□□ -0.61
COL3A1-202ENST00000317840 FNBP1Q96RU3 617 aa11.24□□□□□ -0.61
COL3A1-202ENST00000317840 KIFC3Q9BVG8 833 aa11.24□□□□□ -0.61
COL3A1-202ENST00000317840 CDC42EP4Q9H3Q1 356 aaKnown RBP11.24□□□□□ -0.61
COL3A1-202ENST00000317840 NOD2Q9HC29 1040 aa11.24□□□□□ -0.61
COL3A1-202ENST00000317840 HERC5Q9UII4 1024 aaKnown RBP11.24□□□□□ -0.61
COL3A1-202ENST00000317840 NCANO14594 1321 aa11.24□□□□□ -0.61
COL3A1-202ENST00000317840 ATF7P17544 494 aaPredicted RBP11.24□□□□□ -0.61
COL3A1-202ENST00000317840 RFX1P22670 979 aa11.24□□□□□ -0.61
COL3A1-202ENST00000317840 ELF1P32519 619 aa11.24□□□□□ -0.61
COL3A1-202ENST00000317840 CIITAP33076 1130 aa11.24□□□□□ -0.61
COL3A1-202ENST00000317840 SETDB1Q15047 1291 aa11.24□□□□□ -0.61
COL3A1-202ENST00000317840 TMED2Q15363 201 aa11.24□□□□□ -0.61
COL3A1-202ENST00000317840 DCAF15Q66K64 600 aa11.24□□□□□ -0.61
COL3A1-202ENST00000317840 SH3BP5LQ7L8J4 393 aa11.24□□□□□ -0.61
COL3A1-202ENST00000317840 NCAPG2Q86XI2 1143 aa11.24□□□□□ -0.61
COL3A1-202ENST00000317840 CBWD2Q8IUF1 395 aa11.24□□□□□ -0.61
COL3A1-202ENST00000317840 TAB3Q8N5C8 712 aaPredicted RBP11.24□□□□□ -0.61
COL3A1-202ENST00000317840 MKL1Q969V6 931 aa11.24□□□□□ -0.61
COL3A1-202ENST00000317840 EXOC7Q9UPT5 735 aa11.24□□□□□ -0.61
COL3A1-202ENST00000317840 FOXO6A8MYZ6 492 aa11.24□□□□□ -0.61
COL3A1-202ENST00000317840 RASSF9O75901 435 aa11.24□□□□□ -0.61
COL3A1-202ENST00000317840 CALCAP01258 141 aa11.24□□□□□ -0.61
COL3A1-202ENST00000317840 NSFP46459 744 aaKnown RBP11.24□□□□□ -0.61
COL3A1-202ENST00000317840 EMC10Q5UCC4 262 aa11.24□□□□□ -0.61
COL3A1-202ENST00000317840 TTC27Q6P3X3 843 aa11.24□□□□□ -0.61
COL3A1-202ENST00000317840 PASD1Q8IV76 773 aa11.24□□□□□ -0.61
COL3A1-202ENST00000317840 DHX38Q92620 1227 aaKnown RBP11.24□□□□□ -0.61
COL3A1-202ENST00000317840 PI4K2AQ9BTU6 479 aa11.24□□□□□ -0.61
COL3A1-202ENST00000317840 KDM4CQ9H3R0 1056 aa11.24□□□□□ -0.61
COL3A1-202ENST00000317840 ABCF3Q9NUQ8 709 aa11.24□□□□□ -0.61
COL3A1-202ENST00000317840 UBOX5O94941 541 aa11.23□□□□□ -0.61
COL3A1-202ENST00000317840 NUDT17P0C025 328 aa11.23□□□□□ -0.61
COL3A1-202ENST00000317840 WDR44Q5JSH3 913 aa11.23□□□□□ -0.61
COL3A1-202ENST00000317840 LMBRD2Q68DH5 695 aaPredicted RBP11.23□□□□□ -0.61
COL3A1-202ENST00000317840 NOP9Q86U38 636 aaKnown RBP11.23□□□□□ -0.61
COL3A1-202ENST00000317840 NLRX1Q86UT6 975 aa11.23□□□□□ -0.61
COL3A1-202ENST00000317840 GMCL1Q96IK5 515 aa11.23□□□□□ -0.61
COL3A1-202ENST00000317840 MBOAT7Q96N66 472 aa11.23□□□□□ -0.61
COL3A1-202ENST00000317840 TRIM7Q9C029 511 aa11.23□□□□□ -0.61
COL3A1-202ENST00000317840 ECT2Q9H8V3 914 aa11.23□□□□□ -0.61
COL3A1-202ENST00000317840 CTNNAL1Q9UBT7 734 aa11.23□□□□□ -0.61
COL3A1-202ENST00000317840 HACL1Q9UJ83 578 aa11.23□□□□□ -0.61
COL3A1-202ENST00000317840 PSMD10O75832 226 aa11.23□□□□□ -0.61
COL3A1-202ENST00000317840 ATP11AP98196 1134 aa11.23□□□□□ -0.61
COL3A1-202ENST00000317840 CHADLQ6NUI6 762 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms