RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 KDM5BQ9UGL1 1544 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 PTPRZ1P23471 2315 aaPredicted RBP5.1□□□□□ -1.59
CSMD3-201ENST00000297405 CYP19A1P11511 503 aaPredicted RBP5.1□□□□□ -1.59
CSMD3-201ENST00000297405 DMC1Q14565 340 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 TRIP13Q15645 432 aaPredicted RBP5.1□□□□□ -1.59
CSMD3-201ENST00000297405 PDZK1Q5T2W1 519 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 C10orf107Q8IVU9 208 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 SEL1LQ9UBV2 794 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 ATP10DQ9P241 1426 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 ARAP1Q96P48 1450 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 CALB1P05937 261 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 SERPINB9P50453 376 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 YWHAGP61981 247 aaKnown RBP eCLIP5.1□□□□□ -1.59
CSMD3-201ENST00000297405 S100A12P80511 92 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 TSR2Q969E8 191 aaKnown RBP5.1□□□□□ -1.59
CSMD3-201ENST00000297405 SEC16BQ96JE7 1060 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 CINPQ9BW66 212 aaPredicted RBP5.1□□□□□ -1.59
CSMD3-201ENST00000297405 CARD14Q9BXL6 1004 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 DCLK3Q9C098 648 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 AKAP12Q02952 1782 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 GAS7O60861 476 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 SLC12A1Q13621 1099 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 NAIF1Q69YI7 327 aaPredicted RBP5.1□□□□□ -1.59
CSMD3-201ENST00000297405 SULT6B1Q6IMI4 303 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 PADI6Q6TGC4 694 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 KDM7AQ6ZMT4 941 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 ZCCHC7Q8N3Z6 543 aaKnown RBP5.1□□□□□ -1.59
CSMD3-201ENST00000297405 ELAC2Q9BQ52 826 aaKnown RBP5.1□□□□□ -1.59
CSMD3-201ENST00000297405 NUP85Q9BW27 656 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 GGNBP2Q9H3C7 697 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 CAB39LQ9H9S4 337 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 SGK1O00141 431 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 PIK3CDO00329 1044 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 TM9SF1O15321 606 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 SULT1B1O43704 296 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 SNAP91O60641 907 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 GABPAQ06546 454 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 KIAA1755Q5JYT7 1200 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 LIN54Q6MZP7 749 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 CDC37L1Q7L3B6 337 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 UNC45BQ8IWX7 931 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 TOR1AIP2Q8NFQ8 470 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 PNPT1Q8TCS8 783 aaKnown RBP5.1□□□□□ -1.59
CSMD3-201ENST00000297405 SERPINB12Q96P63 405 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 EHD1Q9H4M9 534 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 BAIAP2Q9UQB8 552 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 CNTFP26441 200 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 SARSP49591 514 aaKnown RBP5.1□□□□□ -1.59
CSMD3-201ENST00000297405 IRAK1P51617 712 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 LGALS3BPQ08380 585 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 CCDC142Q17RM4 750 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 BRDTQ58F21 947 aaPredicted RBP5.1□□□□□ -1.59
CSMD3-201ENST00000297405 EIF5AL1Q6IS14 154 aaKnown RBP5.1□□□□□ -1.59
CSMD3-201ENST00000297405 ZNF398Q8TD17 642 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 SLC26A7Q8TE54 656 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 SH3TC2Q8TF17 1288 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 LARP4BQ92615 738 aaKnown RBP5.1□□□□□ -1.59
CSMD3-201ENST00000297405 RBBP8Q99708 897 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 PKD2L1Q9P0L9 805 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 PFDN2Q9UHV9 154 aa5.1□□□□□ -1.59
CSMD3-201ENST00000297405 HSPD1P10809 573 aaKnown RBP5.09□□□□□ -1.59
CSMD3-201ENST00000297405 ACLYP53396 1101 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 PUDPQ08623 228 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 CUL4AQ13619 759 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 TTC38Q5R3I4 469 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 HECTD3Q5T447 861 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 TSPAN17Q96FV3 270 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 METTL22Q9BUU2 404 aaPredicted RBP5.09□□□□□ -1.59
CSMD3-201ENST00000297405 HDAC6Q9UBN7 1215 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 F5P12259 2224 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 PTPREP23469 700 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 TSNQ15631 228 aaKnown RBP5.09□□□□□ -1.59
CSMD3-201ENST00000297405 LHFPL3Q86UP9 236 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 EGFL6Q8IUX8 553 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 TTC8Q8TAM2 541 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 SLC6A15Q9H2J7 730 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 ABCB6Q9NP58 842 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 TTC37Q6PGP7 1564 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 URB2Q14146 1524 aaKnown RBP5.09□□□□□ -1.59
CSMD3-201ENST00000297405 A0A1W2PRG6 482 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 KRT1P04264 644 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 COPAP53621 1224 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 PRKAA2P54646 552 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 NR1H2P55055 460 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 DLG1Q12959 904 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 PLCL1Q15111 1095 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 RGS9BPQ6ZS82 235 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 HSPH1Q92598 858 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 MYLK2Q9H1R3 596 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 ADNPQ9H2P0 1102 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 PCDH11YQ9BZA8 1340 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 HMGXB3Q12766 1538 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 SAMD9Q5K651 1589 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 DMP1Q13316 513 aaPredicted RBP5.09□□□□□ -1.59
CSMD3-201ENST00000297405 TCEAL7Q9BRU2 100 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 USP19O94966 1318 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 ANK1P16157 1881 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 ANKRD36A6QL64 1941 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 RFX7Q2KHR2 1363 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 CAND2O75155 1236 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms