RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 MMP3P08254 477 aa18.18■□□□□ 0.5
CPSF4-201ENST00000292476 GARTP22102 1010 aa18.18■□□□□ 0.5
CPSF4-201ENST00000292476 GLRA2P23416 452 aa18.18■□□□□ 0.5
CPSF4-201ENST00000292476 CNGA1P29973 690 aa18.18■□□□□ 0.5
CPSF4-201ENST00000292476 CYP2J2P51589 502 aa18.18■□□□□ 0.5
CPSF4-201ENST00000292476 SLFN12LQ6IEE8 588 aa18.18■□□□□ 0.5
CPSF4-201ENST00000292476 CAPZA3Q96KX2 299 aa18.18■□□□□ 0.5
CPSF4-201ENST00000292476 OSBPL9Q96SU4 736 aa18.18■□□□□ 0.5
CPSF4-201ENST00000292476 GANQ9H2C0 597 aa18.18■□□□□ 0.5
CPSF4-201ENST00000292476 KIAA1586Q9HCI6 787 aa18.18■□□□□ 0.5
CPSF4-201ENST00000292476 ADAM21Q9UKJ8 722 aa18.18■□□□□ 0.5
CPSF4-201ENST00000292476 LRRIQ4A6NIV6 560 aa18.18■□□□□ 0.5
CPSF4-201ENST00000292476 H3BRB1 525 aa18.18■□□□□ 0.5
CPSF4-201ENST00000292476 PDE2AO00408 941 aaPredicted RBP18.18■□□□□ 0.5
CPSF4-201ENST00000292476 MOCS3O95396 460 aa18.18■□□□□ 0.5
CPSF4-201ENST00000292476 ZNF865P0CJ78 1059 aaPredicted RBP18.18■□□□□ 0.5
CPSF4-201ENST00000292476 TMOD1P28289 359 aa18.18■□□□□ 0.5
CPSF4-201ENST00000292476 CPT1AP50416 773 aa18.18■□□□□ 0.5
CPSF4-201ENST00000292476 ENPEPQ07075 957 aa18.18■□□□□ 0.5
CPSF4-201ENST00000292476 TDRD12Q587J7 1177 aaKnown RBP18.18■□□□□ 0.5
CPSF4-201ENST00000292476 TCERG1LQ5VWI1 586 aa18.18■□□□□ 0.5
CPSF4-201ENST00000292476 ZBTB8OSQ8IWT0 167 aa18.18■□□□□ 0.5
CPSF4-201ENST00000292476 BICD1Q96G01 975 aa18.18■□□□□ 0.5
CPSF4-201ENST00000292476 BORCS6Q96GS4 357 aa18.18■□□□□ 0.5
CPSF4-201ENST00000292476 AP5M1Q9H0R1 490 aa18.18■□□□□ 0.5
CPSF4-201ENST00000292476 TUT1Q9H6E5 874 aaKnown RBP18.18■□□□□ 0.5
CPSF4-201ENST00000292476 HSPBP1Q9NZL4 362 aa18.18■□□□□ 0.5
CPSF4-201ENST00000292476 FBXL5Q9UKA1 691 aa18.18■□□□□ 0.5
CPSF4-201ENST00000292476 GNEQ9Y223 722 aaKnown RBP18.18■□□□□ 0.5
CPSF4-201ENST00000292476 BZW2Q9Y6E2 419 aaKnown RBP18.18■□□□□ 0.5
CPSF4-201ENST00000292476 A6NJR5 290 aa18.17■□□□□ 0.5
CPSF4-201ENST00000292476 HNRNPDLO14979 420 aaKnown RBP18.17■□□□□ 0.5
CPSF4-201ENST00000292476 PRKAR2AP13861 404 aaKnown RBP18.17■□□□□ 0.5
CPSF4-201ENST00000292476 EN2P19622 333 aaPredicted RBP18.17■□□□□ 0.5
CPSF4-201ENST00000292476 TNFRSF8P28908 595 aa18.17■□□□□ 0.5
CPSF4-201ENST00000292476 CASP4P49662 377 aa18.17■□□□□ 0.5
CPSF4-201ENST00000292476 POU5F1BQ06416 359 aa18.17■□□□□ 0.5
CPSF4-201ENST00000292476 CETN1Q12798 172 aa18.17■□□□□ 0.5
CPSF4-201ENST00000292476 SLC18A3Q16572 532 aa18.17■□□□□ 0.5
CPSF4-201ENST00000292476 GLE1Q53GS7 698 aaKnown RBP18.17■□□□□ 0.5
CPSF4-201ENST00000292476 DCAF17Q5H9S7 520 aaPredicted RBP18.17■□□□□ 0.5
CPSF4-201ENST00000292476 TMEM63BQ5T3F8 832 aa18.17■□□□□ 0.5
CPSF4-201ENST00000292476 GJC2Q5T442 439 aaPredicted RBP18.17■□□□□ 0.5
CPSF4-201ENST00000292476 MFSD14CQ5VZR4 134 aa18.17■□□□□ 0.5
CPSF4-201ENST00000292476 ASAP3Q8TDY4 903 aa18.17■□□□□ 0.5
CPSF4-201ENST00000292476 COG1Q8WTW3 980 aa18.17■□□□□ 0.5
CPSF4-201ENST00000292476 PRPF31Q8WWY3 499 aaKnown RBP18.17■□□□□ 0.5
CPSF4-201ENST00000292476 C16orf70Q9BSU1 422 aa18.17■□□□□ 0.5
CPSF4-201ENST00000292476 SUGCTQ9HAC7 445 aa18.17■□□□□ 0.5
CPSF4-201ENST00000292476 DAAM1Q9Y4D1 1078 aa18.17■□□□□ 0.5
CPSF4-201ENST00000292476 RRN3P2A6NIE6 340 aa18.16■□□□□ 0.5
CPSF4-201ENST00000292476 ZBTB42B2RXF5 422 aa18.16■□□□□ 0.5
CPSF4-201ENST00000292476 N4BP1O75113 896 aaKnown RBP18.16■□□□□ 0.5
CPSF4-201ENST00000292476 CLSTN1O94985 981 aa18.16■□□□□ 0.5
CPSF4-201ENST00000292476 PIGRP01833 764 aa18.16■□□□□ 0.5
CPSF4-201ENST00000292476 PAFAH1B1P43034 410 aa18.16■□□□□ 0.5
CPSF4-201ENST00000292476 LIG4P49917 911 aa18.16■□□□□ 0.5
CPSF4-201ENST00000292476 POLR2FP61218 127 aaKnown RBP18.16■□□□□ 0.5
CPSF4-201ENST00000292476 BFSP1Q12934 665 aa18.16■□□□□ 0.5
CPSF4-201ENST00000292476 CCNI2Q6ZMN8 369 aaPredicted RBP18.16■□□□□ 0.5
CPSF4-201ENST00000292476 GBP6Q6ZN66 633 aa18.16■□□□□ 0.5
CPSF4-201ENST00000292476 SLC35C1Q96A29 364 aa18.16■□□□□ 0.5
CPSF4-201ENST00000292476 RNPEPQ9H4A4 650 aa18.16■□□□□ 0.5
CPSF4-201ENST00000292476 SUCLA2Q9P2R7 463 aaPredicted RBP18.16■□□□□ 0.5
CPSF4-201ENST00000292476 LRRIQ3A6PVS8 624 aaPredicted RBP18.15■□□□□ 0.5
CPSF4-201ENST00000292476 ZNF185O15231 689 aa18.15■□□□□ 0.5
CPSF4-201ENST00000292476 DYNC1LI2O43237 492 aaPredicted RBP18.15■□□□□ 0.5
CPSF4-201ENST00000292476 IGHA2P01877 340 aa18.15■□□□□ 0.5
CPSF4-201ENST00000292476 AKR1A1P14550 325 aa18.15■□□□□ 0.5
CPSF4-201ENST00000292476 INSRRP14616 1297 aa18.15■□□□□ 0.5
CPSF4-201ENST00000292476 CACNB2Q08289 660 aaPredicted RBP18.15■□□□□ 0.5
CPSF4-201ENST00000292476 NAB2Q15742 525 aa18.15■□□□□ 0.5
CPSF4-201ENST00000292476 ASIC2Q16515 512 aa18.15■□□□□ 0.5
CPSF4-201ENST00000292476 EFCAB12Q6NXP0 572 aa18.15■□□□□ 0.5
CPSF4-201ENST00000292476 TLK2Q86UE8 772 aa18.15■□□□□ 0.5
CPSF4-201ENST00000292476 SPATA4Q8NEY3 305 aa18.15■□□□□ 0.5
CPSF4-201ENST00000292476 POMGNT1Q8WZA1 660 aa18.15■□□□□ 0.5
CPSF4-201ENST00000292476 KIFC3Q9BVG8 833 aa18.15■□□□□ 0.5
CPSF4-201ENST00000292476 GRID2IPA4D2P6 1211 aa18.15■□□□□ 0.5
CPSF4-201ENST00000292476 CES2O00748 559 aa18.15■□□□□ 0.5
CPSF4-201ENST00000292476 P4HA2O15460 535 aa18.15■□□□□ 0.5
CPSF4-201ENST00000292476 LDHAP00338 332 aaKnown RBP18.15■□□□□ 0.5
CPSF4-201ENST00000292476 MCCD1P59942 119 aaPredicted RBP18.15■□□□□ 0.5
CPSF4-201ENST00000292476 CDC42EP1Q00587 391 aa18.15■□□□□ 0.5
CPSF4-201ENST00000292476 GFPT1Q06210 699 aaPredicted RBP18.15■□□□□ 0.5
CPSF4-201ENST00000292476 LAMTOR4Q0VGL1 99 aa18.15■□□□□ 0.5
CPSF4-201ENST00000292476 CAPSQ13938 189 aa18.15■□□□□ 0.5
CPSF4-201ENST00000292476 EXOC3L4Q17RC7 722 aa18.15■□□□□ 0.5
CPSF4-201ENST00000292476 DEFB118Q96PH6 123 aa18.15■□□□□ 0.5
CPSF4-201ENST00000292476 CBWD1Q9BRT8 395 aa18.15■□□□□ 0.5
CPSF4-201ENST00000292476 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.15■□□□□ 0.59e-6■■□□□ 13.2
CPSF4-201ENST00000292476 HMX1Q9NP08 348 aaPredicted RBP18.15■□□□□ 0.5
CPSF4-201ENST00000292476 NLRC4Q9NPP4 1024 aa18.15■□□□□ 0.5
CPSF4-201ENST00000292476 HPCAL4Q9UM19 191 aa18.15■□□□□ 0.5
CPSF4-201ENST00000292476 PCDHGC5Q9Y5F6 944 aa18.15■□□□□ 0.5
CPSF4-201ENST00000292476 ADGRA3Q8IWK6 1321 aa18.14■□□□□ 0.49
CPSF4-201ENST00000292476 KPNA6O60684 536 aa18.14■□□□□ 0.49
CPSF4-201ENST00000292476 CCND3P30281 292 aaPredicted RBP18.14■□□□□ 0.49
CPSF4-201ENST00000292476 KLHL30Q0D2K2 578 aa18.14■□□□□ 0.49
CPSF4-201ENST00000292476 MAP3K21Q5TCX8 1036 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms