RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 AKR1B1P15121 316 aa20.25■□□□□ 0.83
UPF1-201ENST00000262803 ZNF235Q14590 738 aa20.25■□□□□ 0.83
UPF1-201ENST00000262803 KRT35Q92764 455 aa20.25■□□□□ 0.83
UPF1-201ENST00000262803 NSUN4Q96CB9 384 aaKnown RBP20.25■□□□□ 0.83
UPF1-201ENST00000262803 CEP19Q96LK0 163 aa20.25■□□□□ 0.83
UPF1-201ENST00000262803 FOPNLQ96NB1 174 aa20.25■□□□□ 0.83
UPF1-201ENST00000262803 SPAG7O75391 227 aa20.25■□□□□ 0.83
UPF1-201ENST00000262803 CYP2C19P33261 490 aa20.25■□□□□ 0.83
UPF1-201ENST00000262803 WASHC5Q12768 1159 aa20.25■□□□□ 0.83
UPF1-201ENST00000262803 COG2Q14746 738 aa20.25■□□□□ 0.83
UPF1-201ENST00000262803 SMARCAD1Q9H4L7 1026 aa20.25■□□□□ 0.83
UPF1-201ENST00000262803 JPH1Q9HDC5 661 aaPredicted RBP20.25■□□□□ 0.83
UPF1-201ENST00000262803 INTUQ9ULD6 942 aa20.25■□□□□ 0.83
UPF1-201ENST00000262803 TTC7AQ9ULT0 858 aaPredicted RBP20.25■□□□□ 0.83
UPF1-201ENST00000262803 MTHFD1LQ6UB35 978 aa20.25■□□□□ 0.83
UPF1-201ENST00000262803 HOMEZQ8IX15 550 aa20.25■□□□□ 0.83
UPF1-201ENST00000262803 RAET1EQ8TD07 263 aa20.25■□□□□ 0.83
UPF1-201ENST00000262803 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP20.25■□□□□ 0.833e-6■■■■■ 47.7
UPF1-201ENST00000262803 RFFLQ8WZ73 363 aa20.25■□□□□ 0.83
UPF1-201ENST00000262803 TUBE1Q9UJT0 475 aa20.25■□□□□ 0.83
UPF1-201ENST00000262803 TARSL2A2RTX5 802 aaKnown RBP20.25■□□□□ 0.83
UPF1-201ENST00000262803 DHX34Q14147 1143 aaKnown RBP20.25■□□□□ 0.83
UPF1-201ENST00000262803 ADSSL1Q8N142 457 aa20.25■□□□□ 0.83
UPF1-201ENST00000262803 OR9Q1Q8NGQ5 310 aa20.25■□□□□ 0.83
UPF1-201ENST00000262803 YY1AP1Q9H869 796 aa20.25■□□□□ 0.83
UPF1-201ENST00000262803 CHCHD3Q9NX63 227 aaKnown RBP20.25■□□□□ 0.83
UPF1-201ENST00000262803 ARHGEF40Q8TER5 1519 aa20.24■□□□□ 0.83
UPF1-201ENST00000262803 PRAMEP78395 509 aa20.24■□□□□ 0.83
UPF1-201ENST00000262803 MORF4L2Q15014 288 aa20.24■□□□□ 0.83
UPF1-201ENST00000262803 NKX1-1Q15270 411 aaPredicted RBP20.24■□□□□ 0.83
UPF1-201ENST00000262803 ANO4Q32M45 955 aa20.24■□□□□ 0.83
UPF1-201ENST00000262803 MMS22LQ6ZRQ5 1243 aa20.24■□□□□ 0.83
UPF1-201ENST00000262803 ALKBH8Q96BT7 664 aaKnown RBP20.24■□□□□ 0.83
UPF1-201ENST00000262803 EIF2AK1Q9BQI3 630 aaKnown RBP20.24■□□□□ 0.83
UPF1-201ENST00000262803 HACD3Q9P035 362 aa20.24■□□□□ 0.83
UPF1-201ENST00000262803 SENP1Q9P0U3 644 aa20.24■□□□□ 0.83
UPF1-201ENST00000262803 TJP2Q9UDY2 1190 aa20.24■□□□□ 0.83
UPF1-201ENST00000262803 NSUN2Q08J23 767 aaKnown RBP eCLIP20.24■□□□□ 0.83
UPF1-201ENST00000262803 CCDC15Q0P6D6 951 aa20.24■□□□□ 0.83
UPF1-201ENST00000262803 GTF2H3Q13889 308 aa20.24■□□□□ 0.83
UPF1-201ENST00000262803 EPM2AIP1Q7L775 607 aaPredicted RBP20.24■□□□□ 0.83
UPF1-201ENST00000262803 OR6J1Q8NGC5 347 aa20.24■□□□□ 0.83
UPF1-201ENST00000262803 HPS3Q969F9 1004 aa20.24■□□□□ 0.83
UPF1-201ENST00000262803 ATP6V1G3Q96LB4 118 aa20.24■□□□□ 0.83
UPF1-201ENST00000262803 RPAP3Q9H6T3 665 aaPredicted RBP20.24■□□□□ 0.83
UPF1-201ENST00000262803 DPYDQ12882 1025 aa20.24■□□□□ 0.83
UPF1-201ENST00000262803 SNAPC2Q13487 334 aa20.24■□□□□ 0.83
UPF1-201ENST00000262803 RPAINQ86UA6 219 aa20.24■□□□□ 0.83
UPF1-201ENST00000262803 TEX13BQ9BXU2 312 aa20.24■□□□□ 0.83
UPF1-201ENST00000262803 NEUROG2Q9H2A3 272 aa20.24■□□□□ 0.83
UPF1-201ENST00000262803 SPON1Q9HCB6 807 aa20.24■□□□□ 0.83
UPF1-201ENST00000262803 SNX12Q9UMY4 172 aa20.24■□□□□ 0.83
UPF1-201ENST00000262803 SMAPO00193 183 aa20.24■□□□□ 0.83
UPF1-201ENST00000262803 CFLARO15519 480 aa20.24■□□□□ 0.83
UPF1-201ENST00000262803 MAFGO15525 162 aa20.24■□□□□ 0.83
UPF1-201ENST00000262803 CD4P01730 458 aa20.24■□□□□ 0.83
UPF1-201ENST00000262803 ANGPTL8Q6UXH0 198 aa20.24■□□□□ 0.83
UPF1-201ENST00000262803 OTUD5Q96G74 571 aa20.24■□□□□ 0.83
UPF1-201ENST00000262803 MLXIPLQ9NP71 852 aa20.24■□□□□ 0.83
UPF1-201ENST00000262803 KDM1AO60341 852 aa20.23■□□□□ 0.83
UPF1-201ENST00000262803 RPLP2P05387 115 aaKnown RBP20.23■□□□□ 0.83
UPF1-201ENST00000262803 RBP5P82980 135 aa20.23■□□□□ 0.83
UPF1-201ENST00000262803 TRIM59Q8IWR1 403 aa20.23■□□□□ 0.83
UPF1-201ENST00000262803 KIF12Q96FN5 646 aa20.23■□□□□ 0.83
UPF1-201ENST00000262803 GJD4Q96KN9 370 aaPredicted RBP20.23■□□□□ 0.83
UPF1-201ENST00000262803 IL25Q9H293 177 aa20.23■□□□□ 0.83
UPF1-201ENST00000262803 ZFYVE28Q9HCC9 887 aa20.23■□□□□ 0.83
UPF1-201ENST00000262803 NYAP2Q9P242 653 aa20.23■□□□□ 0.83
UPF1-201ENST00000262803 CREB3O43889 395 aa20.23■□□□□ 0.83
UPF1-201ENST00000262803 IL18RAPO95256 599 aa20.23■□□□□ 0.83
UPF1-201ENST00000262803 GH1P01241 217 aa20.23■□□□□ 0.83
UPF1-201ENST00000262803 RPS12P25398 132 aaKnown RBP20.23■□□□□ 0.83
UPF1-201ENST00000262803 SBK1Q52WX2 424 aa20.23■□□□□ 0.83
UPF1-201ENST00000262803 PPARGC1AQ9UBK2 798 aaKnown RBP20.23■□□□□ 0.83
UPF1-201ENST00000262803 EEF1B2P24534 225 aaKnown RBP20.23■□□□□ 0.83
UPF1-201ENST00000262803 SCFD1Q8WVM8 642 aa20.23■□□□□ 0.83
UPF1-201ENST00000262803 SAAL1Q96ER3 474 aa20.23■□□□□ 0.83
UPF1-201ENST00000262803 SNF8Q96H20 258 aa20.23■□□□□ 0.83
UPF1-201ENST00000262803 NOP53Q9NZM5 478 aaKnown RBP20.23■□□□□ 0.83
UPF1-201ENST00000262803 ITM2BQ9Y287 266 aa20.23■□□□□ 0.83
UPF1-201ENST00000262803 SETBP1Q9Y6X0 1596 aa20.23■□□□□ 0.83
UPF1-201ENST00000262803 APOL1O14791 398 aa20.23■□□□□ 0.83
UPF1-201ENST00000262803 FXR1P51114 621 aaKnown RBP eCLIP20.23■□□□□ 0.835e-9■■■■■ 29.8
UPF1-201ENST00000262803 STAT5BP51692 787 aa20.23■□□□□ 0.83
UPF1-201ENST00000262803 CEP55Q53EZ4 464 aa20.23■□□□□ 0.83
UPF1-201ENST00000262803 SPATA2LQ8IUW3 424 aaPredicted RBP20.23■□□□□ 0.83
UPF1-201ENST00000262803 ST13P4Q8IZP2 240 aaPredicted RBP20.23■□□□□ 0.83
UPF1-201ENST00000262803 XAB2Q9HCS7 855 aaKnown RBP20.23■□□□□ 0.83
UPF1-201ENST00000262803 FAM217BQ9NTX9 383 aaPredicted RBP20.23■□□□□ 0.83
UPF1-201ENST00000262803 BRAFP15056 766 aa20.23■□□□□ 0.83
UPF1-201ENST00000262803 ANTXR2P58335 489 aa20.23■□□□□ 0.83
UPF1-201ENST00000262803 IER5Q5VY09 327 aa20.23■□□□□ 0.83
UPF1-201ENST00000262803 CCDC137Q6PK04 289 aaKnown RBP20.23■□□□□ 0.83
UPF1-201ENST00000262803 MED15Q96RN5 788 aa20.23■□□□□ 0.83
UPF1-201ENST00000262803 ADGRB3O60242 1522 aa20.22■□□□□ 0.83
UPF1-201ENST00000262803 PRKCBP05771 671 aa20.22■□□□□ 0.83
UPF1-201ENST00000262803 ST8SIA6P61647 398 aa20.22■□□□□ 0.83
UPF1-201ENST00000262803 MED21Q13503 144 aa20.22■□□□□ 0.83
UPF1-201ENST00000262803 RASSF3Q86WH2 238 aa20.22■□□□□ 0.83
UPF1-201ENST00000262803 LDHDQ86WU2 507 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms