RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 ZNF564Q8TBZ8 553 aaPredicted RBP11.48□□□□□ -0.57
USP28-201ENST00000003302 NEK9Q8TD19 979 aa11.48□□□□□ -0.57
USP28-201ENST00000003302 CHMP6Q96FZ7 201 aa11.48□□□□□ -0.57
USP28-201ENST00000003302 TAAR1Q96RJ0 339 aa11.48□□□□□ -0.57
USP28-201ENST00000003302 RAVER2Q9HCJ3 691 aaKnown RBP11.48□□□□□ -0.57
USP28-201ENST00000003302 PIK3CDO00329 1044 aa11.48□□□□□ -0.57
USP28-201ENST00000003302 SKAP2O75563 359 aaPredicted RBP11.48□□□□□ -0.57
USP28-201ENST00000003302 CYP11B1P15538 503 aa11.48□□□□□ -0.57
USP28-201ENST00000003302 NT5C2P49902 561 aa11.48□□□□□ -0.57
USP28-201ENST00000003302 C10orf76Q5T2E6 689 aa11.48□□□□□ -0.57
USP28-201ENST00000003302 HIBCHQ6NVY1 386 aaPredicted RBP11.48□□□□□ -0.57
USP28-201ENST00000003302 HAPLN2Q9GZV7 340 aa11.48□□□□□ -0.57
USP28-201ENST00000003302 PI4K2BG5E9Z4 385 aa11.48□□□□□ -0.57
USP28-201ENST00000003302 EIF3DO15371 548 aaKnown RBP eCLIP11.48□□□□□ -0.57
USP28-201ENST00000003302 ZNF862O60290 1169 aa11.48□□□□□ -0.57
USP28-201ENST00000003302 UBOX5O94941 541 aa11.48□□□□□ -0.57
USP28-201ENST00000003302 POLR2MP0CAP2 368 aa11.48□□□□□ -0.57
USP28-201ENST00000003302 ANO5Q75V66 913 aa11.48□□□□□ -0.57
USP28-201ENST00000003302 SLC13A5Q86YT5 568 aaPredicted RBP11.48□□□□□ -0.57
USP28-201ENST00000003302 ZNF653Q96CK0 615 aa11.48□□□□□ -0.57
USP28-201ENST00000003302 SAE1Q9UBE0 346 aaPredicted RBP11.48□□□□□ -0.57
USP28-201ENST00000003302 VIMP08670 466 aaKnown RBP11.47□□□□□ -0.57
USP28-201ENST00000003302 PAEPP09466 180 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 COILP38432 576 aaPredicted RBP11.47□□□□□ -0.57
USP28-201ENST00000003302 TAS2R40P59535 323 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 ZNF568Q3ZCX4 644 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 CCDC121Q6ZUS5 278 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 VPS36Q86VN1 386 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 CLEC4DQ8WXI8 215 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 ZBTB45Q96K62 511 aaPredicted RBP11.47□□□□□ -0.57
USP28-201ENST00000003302 TTC7AQ9ULT0 858 aaPredicted RBP11.47□□□□□ -0.57
USP28-201ENST00000003302 PPIP5K2O43314 1243 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 PHF2O75151 1096 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 KRT10P13645 584 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 NPR1P16066 1061 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 DSG3P32926 999 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 CNGA2Q16280 664 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 STRIP1Q5VSL9 837 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 CYFIP1Q7L576 1253 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 PODNQ7Z5L7 613 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 CACNA2D3Q8IZS8 1091 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 MASTLQ96GX5 879 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 GRID1Q9ULK0 1009 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 WDR81Q562E7 1941 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 MROH7Q68CQ1 1323 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 SPOPO43791 374 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 MYCLP12524 364 aaPredicted RBP11.47□□□□□ -0.57
USP28-201ENST00000003302 SMTNP53814 917 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 SYCP2LQ5T4T6 812 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 DENND2CQ68D51 928 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 DLK2Q6UY11 383 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 VCANP13611 3396 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 TCP11X1B4DZS4 312 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 MXI1P50539 228 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 KRT17Q04695 432 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 BIRC3Q13489 604 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 RASA3Q14644 834 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 SNRNP35Q16560 246 aaKnown RBP11.47□□□□□ -0.57
USP28-201ENST00000003302 FAM102BQ5T8I3 360 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 TAS1R3Q7RTX0 852 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 FAM71AQ8IYT1 594 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 STAMBPL1Q96FJ0 436 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 SLCO1B3Q9NPD5 702 aa11.47□□□□□ -0.57
USP28-201ENST00000003302 RGS16O15492 202 aaPredicted RBP11.46□□□□□ -0.57
USP28-201ENST00000003302 CLTAP09496 248 aa11.46□□□□□ -0.57
USP28-201ENST00000003302 ALAS1P13196 640 aa11.46□□□□□ -0.57
USP28-201ENST00000003302 GPC5P78333 572 aa11.46□□□□□ -0.57
USP28-201ENST00000003302 AKT1S1Q96B36 256 aa11.46□□□□□ -0.57
USP28-201ENST00000003302 HAUS1Q96CS2 278 aa11.46□□□□□ -0.57
USP28-201ENST00000003302 FHDC1Q9C0D6 1143 aaPredicted RBP11.46□□□□□ -0.57
USP28-201ENST00000003302 ARHGEF10LQ9HCE6 1279 aa11.46□□□□□ -0.57
USP28-201ENST00000003302 TUFT1Q9NNX1 390 aa11.46□□□□□ -0.57
USP28-201ENST00000003302 TMX2Q9Y320 296 aa11.46□□□□□ -0.57
USP28-201ENST00000003302 MYH9P35579 1960 aaKnown RBP11.46□□□□□ -0.57
USP28-201ENST00000003302 TMEM120BA0PK00 339 aa11.46□□□□□ -0.57
USP28-201ENST00000003302 CCDC169A6NNP5 214 aa11.46□□□□□ -0.57
USP28-201ENST00000003302 NUDT17P0C025 328 aa11.46□□□□□ -0.57
USP28-201ENST00000003302 CD58P19256 250 aa11.46□□□□□ -0.57
USP28-201ENST00000003302 PPP1R7Q15435 360 aa11.46□□□□□ -0.57
USP28-201ENST00000003302 AGBL2Q5U5Z8 902 aa11.46□□□□□ -0.57
USP28-201ENST00000003302 EP400NLQ6ZTU2 488 aa11.46□□□□□ -0.57
USP28-201ENST00000003302 SV2AQ7L0J3 742 aa11.46□□□□□ -0.57
USP28-201ENST00000003302 YTHDF3Q7Z739 585 aaKnown RBP11.46□□□□□ -0.57
USP28-201ENST00000003302 TAX1BP1Q86VP1 789 aa11.46□□□□□ -0.57
USP28-201ENST00000003302 SYCE1Q8N0S2 351 aa11.46□□□□□ -0.57
USP28-201ENST00000003302 C1orf131Q8NDD1 294 aaKnown RBP11.46□□□□□ -0.57
USP28-201ENST00000003302 FAM212AQ96EL1 285 aa11.46□□□□□ -0.57
USP28-201ENST00000003302 ZNF668Q96K58 619 aaPredicted RBP11.46□□□□□ -0.57
USP28-201ENST00000003302 NACC1Q96RE7 527 aa11.46□□□□□ -0.57
USP28-201ENST00000003302 ZNF277Q9NRM2 450 aaPredicted RBP11.46□□□□□ -0.57
USP28-201ENST00000003302 ANAPC7Q9UJX3 599 aa11.46□□□□□ -0.57
USP28-201ENST00000003302 YWHABP31946 246 aaKnown RBP11.46□□□□□ -0.58
USP28-201ENST00000003302 ELF3P78545 371 aaPredicted RBP11.46□□□□□ -0.58
USP28-201ENST00000003302 FAM47EQ6ZV65 393 aa11.46□□□□□ -0.58
USP28-201ENST00000003302 FITM2Q8N6M3 262 aa11.46□□□□□ -0.58
USP28-201ENST00000003302 SLC17A8Q8NDX2 589 aa11.46□□□□□ -0.58
USP28-201ENST00000003302 ZBTB10Q96DT7 871 aa11.46□□□□□ -0.58
USP28-201ENST00000003302 MXRA8Q9BRK3 442 aa11.46□□□□□ -0.58
USP28-201ENST00000003302 RANBP17Q9H2T7 1088 aaKnown RBP11.46□□□□□ -0.58
USP28-201ENST00000003302 FAM114A2Q9NRY5 505 aa11.46□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms