RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C KRE29P40026 464 aa5.15□□□□□ -1.58
DEF1YKL054C BRR6P53062 197 aa5.15□□□□□ -1.58
DEF1YKL054C PDR17P53844 350 aa5.15□□□□□ -1.58
DEF1YKL054C YPR098CQ06089 161 aa5.15□□□□□ -1.58
DEF1YKL054C YLR053CQ12026 108 aa5.15□□□□□ -1.58
DEF1YKL054C MCT1Q12283 360 aa5.15□□□□□ -1.58
DEF1YKL054C YLR126CQ12288 251 aa5.15□□□□□ -1.58
DEF1YKL054C CLG1P35190 452 aa5.15□□□□□ -1.59
DEF1YKL054C YBR062CP38239 180 aa5.15□□□□□ -1.59
DEF1YKL054C RCK1P38622 512 aa5.15□□□□□ -1.59
DEF1YKL054C MCM22P47167 239 aa5.15□□□□□ -1.59
DEF1YKL054C ARO80Q04052 950 aa5.15□□□□□ -1.59
DEF1YKL054C NOC4Q06512 552 aaPredicted RBP5.15□□□□□ -1.59
DEF1YKL054C RFM1Q12192 310 aa5.15□□□□□ -1.59
DEF1YKL054C RRP42Q12277 265 aaPredicted RBP5.15□□□□□ -1.59
DEF1YKL054C SAM2P19358 384 aaKnown RBP5.14□□□□□ -1.59
DEF1YKL054C PPH21P23594 369 aa5.14□□□□□ -1.59
DEF1YKL054C EDC3P39998 551 aaKnown RBP5.14□□□□□ -1.59
DEF1YKL054C TDA7P53882 636 aaPredicted RBP5.14□□□□□ -1.59
DEF1YKL054C YDR248CQ03786 193 aa5.14□□□□□ -1.59
DEF1YKL054C UTP15Q04305 513 aaKnown RBP5.14□□□□□ -1.59
DEF1YKL054C DPP1Q05521 289 aa5.14□□□□□ -1.59
DEF1YKL054C MRX9Q07349 420 aaKnown RBP5.14□□□□□ -1.59
DEF1YKL054C HEM25Q07534 307 aa5.14□□□□□ -1.59
DEF1YKL054C AGC1Q12482 902 aa5.14□□□□□ -1.59
DEF1YKL054C MDH3P32419 343 aaKnown RBP RIP-Chip data5.13□□□□□ -1.59not detected
DEF1YKL054C MRPL28P36527 147 aa5.13□□□□□ -1.59
DEF1YKL054C YNL320WP42840 284 aa5.13□□□□□ -1.59
DEF1YKL054C MDV1P47025 714 aa5.13□□□□□ -1.59
DEF1YKL054C POP6P53218 158 aa5.13□□□□□ -1.59
DEF1YKL054C YGR042WP53227 271 aa5.13□□□□□ -1.59
DEF1YKL054C ATP23P53722 227 aa5.13□□□□□ -1.59
DEF1YKL054C TPS1Q00764 495 aaKnown RBP5.13□□□□□ -1.59
DEF1YKL054C YMR279CQ03263 540 aa5.13□□□□□ -1.59
DEF1YKL054C SPC24Q04477 213 aa5.13□□□□□ -1.59
DEF1YKL054C ORM2Q06144 216 aa5.13□□□□□ -1.59
DEF1YKL054C RRS1Q08746 203 aaKnown RBP5.13□□□□□ -1.59
DEF1YKL054C CSR2Q12734 1121 aa5.13□□□□□ -1.59
DEF1YKL054C YAL064W-BO13512 126 aa5.13□□□□□ -1.59
DEF1YKL054C DSF1P0CX08 502 aa5.13□□□□□ -1.59
DEF1YKL054C YNR073CP0CX09 502 aa5.13□□□□□ -1.59
DEF1YKL054C CAT2P32796 670 aaKnown RBP5.13□□□□□ -1.59
DEF1YKL054C CAF4P36130 643 aa5.13□□□□□ -1.59
DEF1YKL054C MDM31P38880 579 aa5.13□□□□□ -1.59
DEF1YKL054C YJL016WP47072 561 aa5.13□□□□□ -1.59
DEF1YKL054C IBD2P53892 351 aa5.13□□□□□ -1.59
DEF1YKL054C GRX8Q05926 109 aa5.13□□□□□ -1.59
DEF1YKL054C SEI1Q06058 285 aa5.13□□□□□ -1.59
DEF1YKL054C MRX4Q12467 430 aa5.13□□□□□ -1.59
DEF1YKL054C ZWF1P11412 505 aaKnown RBP5.12□□□□□ -1.59
DEF1YKL054C AEP1P32493 518 aa5.12□□□□□ -1.59
DEF1YKL054C MOG1P47123 218 aa5.12□□□□□ -1.59
DEF1YKL054C VMA10P48836 114 aaKnown RBP5.12□□□□□ -1.59
DEF1YKL054C RPL23AP0CX41 137 aaKnown RBP5.12□□□□□ -1.59
DEF1YKL054C RPL23BP0CX42 137 aaKnown RBP5.12□□□□□ -1.59
DEF1YKL054C VPS25P47142 202 aa5.12□□□□□ -1.59
DEF1YKL054C SBH2P52871 88 aa5.12□□□□□ -1.59
DEF1YKL054C TPC1P53257 314 aa5.12□□□□□ -1.59
DEF1YKL054C FYV6P53913 173 aa5.12□□□□□ -1.59
DEF1YKL054C TAF9Q05027 157 aa5.12□□□□□ -1.59
DEF1YKL054C FAR10Q06001 478 aa5.12□□□□□ -1.59
DEF1YKL054C ERD1P16151 362 aa5.11□□□□□ -1.59
DEF1YKL054C ISY1P21374 235 aaPredicted RBP5.11□□□□□ -1.59
DEF1YKL054C RPL16AP26784 199 aaKnown RBP5.11□□□□□ -1.59
DEF1YKL054C AGA1P32323 725 aa5.11□□□□□ -1.59
DEF1YKL054C ANR2P36090 516 aaPredicted RBP5.11□□□□□ -1.59
DEF1YKL054C MRPL3P36516 390 aa5.11□□□□□ -1.59
DEF1YKL054C YIL029CP40538 142 aa5.11□□□□□ -1.59
DEF1YKL054C PRM10P42946 383 aa5.11□□□□□ -1.59
DEF1YKL054C CPR7P47103 393 aa5.11□□□□□ -1.59
DEF1YKL054C SUN4P53616 420 aa5.11□□□□□ -1.59
DEF1YKL054C YNL234WP53857 426 aa5.11□□□□□ -1.59
DEF1YKL054C SNX3Q08826 162 aaKnown RBP5.11□□□□□ -1.59
DEF1YKL054C INO2P26798 304 aa5.11□□□□□ -1.59
DEF1YKL054C ALK2P32789 676 aaPredicted RBP5.11□□□□□ -1.59
DEF1YKL054C TDA1Q03533 586 aa5.11□□□□□ -1.59
DEF1YKL054C GMC1Q04399 608 aa5.11□□□□□ -1.59
DEF1YKL054C YOR283WQ12040 230 aaKnown RBP5.11□□□□□ -1.59
DEF1YKL054C FCY22Q12119 530 aa5.11□□□□□ -1.59
DEF1YKL054C BI3Q9ZZW7 517 aa5.11□□□□□ -1.59
DEF1YKL054C HEM4P06174 275 aa5.1□□□□□ -1.59
DEF1YKL054C CUP2P15315 225 aa5.1□□□□□ -1.59
DEF1YKL054C ATG15P25641 520 aa5.1□□□□□ -1.59
DEF1YKL054C WSC4P38739 605 aa5.1□□□□□ -1.59
DEF1YKL054C CHL4P38907 458 aa5.1□□□□□ -1.59
DEF1YKL054C YER076CP40049 302 aa5.1□□□□□ -1.59
DEF1YKL054C IKS1P47042 667 aa5.1□□□□□ -1.59
DEF1YKL054C SDC1Q03323 175 aa5.1□□□□□ -1.59
DEF1YKL054C RDI1Q12434 202 aa5.1□□□□□ -1.59
DEF1YKL054C DBF2P22204 572 aa5.09□□□□□ -1.59
DEF1YKL054C RNA14P25298 677 aaKnown RBP5.09□□□□□ -1.59
DEF1YKL054C FUN26P31381 517 aa5.09□□□□□ -1.59
DEF1YKL054C TIP20P33891 701 aa5.09□□□□□ -1.59
DEF1YKL054C MIX23P38162 196 aa5.09□□□□□ -1.59
DEF1YKL054C YJR054WP47114 497 aa5.09□□□□□ -1.59
DEF1YKL054C GTR2P53290 341 aa5.09□□□□□ -1.59
DEF1YKL054C ABF2Q02486 183 aa5.09□□□□□ -1.59
DEF1YKL054C CTA1P15202 515 aa5.09□□□□□ -1.59
DEF1YKL054C ARO7P32178 256 aa5.09□□□□□ -1.59
DEF1YKL054C GPX1P36014 167 aa5.09□□□□□ -1.59
Retrieved 100 of 5,963 RNA–protein pairs in 38.1 ms