RNA–Protein interactions for RNA: ENST00000636020.1

CLN6-212, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 894 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-212ENST00000636020 HNRNPA1P09651 372 aaKnown RBP eCLIP20.37■□□□□ 0.85
CLN6-212ENST00000636020 KCNA4P22459 653 aa20.37■□□□□ 0.85
CLN6-212ENST00000636020 USP41Q3LFD5 358 aa20.37■□□□□ 0.85
CLN6-212ENST00000636020 PRR23BQ6ZRT6 265 aa20.37■□□□□ 0.85
CLN6-212ENST00000636020 NLRP4Q96MN2 994 aa20.37■□□□□ 0.85
CLN6-212ENST00000636020 COLEC11Q9BWP8 271 aa20.37■□□□□ 0.85
CLN6-212ENST00000636020 CHRDQ9H2X0 955 aa20.37■□□□□ 0.85
CLN6-212ENST00000636020 UBN1Q9NPG3 1134 aa20.37■□□□□ 0.85
CLN6-212ENST00000636020 SEPT9Q9UHD8 586 aaPredicted RBP20.37■□□□□ 0.85
CLN6-212ENST00000636020 FBXW11Q9UKB1 542 aa20.37■□□□□ 0.85
CLN6-212ENST00000636020 ARL5CA6NH57 179 aa20.36■□□□□ 0.85
CLN6-212ENST00000636020 MAFO75444 373 aaPredicted RBP20.36■□□□□ 0.85
CLN6-212ENST00000636020 CHMLP26374 656 aa20.36■□□□□ 0.85
CLN6-212ENST00000636020 CIITAP33076 1130 aa20.36■□□□□ 0.85
CLN6-212ENST00000636020 XKR3Q5GH77 459 aa20.36■□□□□ 0.85
CLN6-212ENST00000636020 FUT10Q6P4F1 479 aa20.36■□□□□ 0.85
CLN6-212ENST00000636020 SGMS1Q86VZ5 419 aa20.36■□□□□ 0.85
CLN6-212ENST00000636020 SMG8Q8ND04 991 aaKnown RBP20.36■□□□□ 0.85
CLN6-212ENST00000636020 SH2D3AQ9BRG2 576 aa20.36■□□□□ 0.85
CLN6-212ENST00000636020 MIOSQ9NXC5 875 aa20.36■□□□□ 0.85
CLN6-212ENST00000636020 RBM8AQ9Y5S9 174 aaKnown RBP20.36■□□□□ 0.85
CLN6-212ENST00000636020 SFNP31947 248 aa20.35■□□□□ 0.85
CLN6-212ENST00000636020 CREMQ03060 361 aa20.35■□□□□ 0.85
CLN6-212ENST00000636020 GAD1Q99259 594 aa20.35■□□□□ 0.85
CLN6-212ENST00000636020 LRRC2Q9BYS8 371 aa20.35■□□□□ 0.85
CLN6-212ENST00000636020 UNC45AQ9H3U1 944 aa20.35■□□□□ 0.85
CLN6-212ENST00000636020 RWDD1Q9H446 243 aaPredicted RBP20.35■□□□□ 0.85
CLN6-212ENST00000636020 HEBP1Q9NRV9 189 aa20.35■□□□□ 0.85
CLN6-212ENST00000636020 RBM28Q9NW13 759 aaKnown RBP20.35■□□□□ 0.85
CLN6-212ENST00000636020 TM4SF5O14894 197 aa20.34■□□□□ 0.85
CLN6-212ENST00000636020 SGSM2O43147 1006 aa20.34■□□□□ 0.85
CLN6-212ENST00000636020 CHMP2AO43633 222 aa20.34■□□□□ 0.85
CLN6-212ENST00000636020 FOXD2O60548 495 aaPredicted RBP20.34■□□□□ 0.85
CLN6-212ENST00000636020 NR1I2O75469 434 aa20.34■□□□□ 0.85
CLN6-212ENST00000636020 ITGA4P13612 1032 aa20.34■□□□□ 0.85
CLN6-212ENST00000636020 GSPT1P15170 499 aaKnown RBP20.34■□□□□ 0.85
CLN6-212ENST00000636020 JAK3P52333 1124 aa20.34■□□□□ 0.85
CLN6-212ENST00000636020 SIM2Q14190 667 aaPredicted RBP20.34■□□□□ 0.85
CLN6-212ENST00000636020 PPP2R5DQ14738 602 aa20.34■□□□□ 0.85
CLN6-212ENST00000636020 IL31Q6EBC2 164 aa20.34■□□□□ 0.85
CLN6-212ENST00000636020 NPAS3Q8IXF0 933 aa20.34■□□□□ 0.85
CLN6-212ENST00000636020 CNNM3Q8NE01 707 aa20.34■□□□□ 0.85
CLN6-212ENST00000636020 EXOC6Q8TAG9 804 aa20.34■□□□□ 0.85
CLN6-212ENST00000636020 RIT2Q99578 217 aa20.34■□□□□ 0.85
CLN6-212ENST00000636020 PLA2G2FQ9BZM2 168 aa20.34■□□□□ 0.85
CLN6-212ENST00000636020 RNF39Q9H2S5 420 aa20.34■□□□□ 0.85
CLN6-212ENST00000636020 MINDY3Q9H8M7 445 aa20.34■□□□□ 0.85
CLN6-212ENST00000636020 NOTCH4Q99466 2003 aa20.34■□□□□ 0.85
CLN6-212ENST00000636020 MSH4O15457 936 aa20.33■□□□□ 0.85
CLN6-212ENST00000636020 CCL16O15467 120 aa20.33■□□□□ 0.85
CLN6-212ENST00000636020 HRO43593 1189 aa20.33■□□□□ 0.85
CLN6-212ENST00000636020 ECI2O75521 394 aa20.33■□□□□ 0.85
CLN6-212ENST00000636020 HOXA9P31269 272 aa20.33■□□□□ 0.85
CLN6-212ENST00000636020 MLH1P40692 756 aa20.33■□□□□ 0.85
CLN6-212ENST00000636020 SCNN1GP51170 649 aa20.33■□□□□ 0.85
CLN6-212ENST00000636020 PPM1LQ5SGD2 360 aa20.33■□□□□ 0.85
CLN6-212ENST00000636020 LIN9Q5TKA1 542 aa20.33■□□□□ 0.85
CLN6-212ENST00000636020 PRSS55Q6UWB4 352 aaPredicted RBP20.33■□□□□ 0.85
CLN6-212ENST00000636020 SRGAP1Q7Z6B7 1085 aa20.33■□□□□ 0.85
CLN6-212ENST00000636020 IER2Q9BTL4 223 aa20.33■□□□□ 0.85
CLN6-212ENST00000636020 KCNH3Q9ULD8 1083 aa20.33■□□□□ 0.85
CLN6-212ENST00000636020 IPPQ9Y573 584 aa20.33■□□□□ 0.85
CLN6-212ENST00000636020 GAS7O60861 476 aa20.32■□□□□ 0.84
CLN6-212ENST00000636020 XYLBO75191 536 aa20.32■□□□□ 0.84
CLN6-212ENST00000636020 IGHDP01880 384 aa20.32■□□□□ 0.84
CLN6-212ENST00000636020 C8AP07357 584 aa20.32■□□□□ 0.84
CLN6-212ENST00000636020 CCR3P51677 355 aa20.32■□□□□ 0.84
CLN6-212ENST00000636020 LIMK1P53667 647 aa20.32■□□□□ 0.84
CLN6-212ENST00000636020 APOA5Q6Q788 366 aa20.32■□□□□ 0.84
CLN6-212ENST00000636020 SYNE3Q6ZMZ3 975 aa20.32■□□□□ 0.84
CLN6-212ENST00000636020 SLC5A5Q92911 643 aa20.32■□□□□ 0.84
CLN6-212ENST00000636020 ZFP42Q96MM3 310 aa20.32■□□□□ 0.84
CLN6-212ENST00000636020 CLSTN3Q9BQT9 956 aa20.32■□□□□ 0.84
CLN6-212ENST00000636020 ADAM28Q9UKQ2 775 aa20.32■□□□□ 0.84
CLN6-212ENST00000636020 NDRG2Q9UN36 371 aaKnown RBP20.32■□□□□ 0.84
CLN6-212ENST00000636020 POLIQ9UNA4 740 aa20.32■□□□□ 0.84
CLN6-212ENST00000636020 COL4A3BPQ9Y5P4 624 aa20.32■□□□□ 0.84
CLN6-212ENST00000636020 ESYT2A0FGR8 921 aa20.31■□□□□ 0.84
CLN6-212ENST00000636020 MAN2B1O00754 1011 aa20.31■□□□□ 0.84
CLN6-212ENST00000636020 EDIL3O43854 480 aa20.31■□□□□ 0.84
CLN6-212ENST00000636020 POU2F2P09086 479 aa20.31■□□□□ 0.84
CLN6-212ENST00000636020 RTN1Q16799 776 aa20.31■□□□□ 0.84
CLN6-212ENST00000636020 RTP2Q5QGT7 225 aa20.31■□□□□ 0.84
CLN6-212ENST00000636020 TTC22Q5TAA0 569 aa20.31■□□□□ 0.84
CLN6-212ENST00000636020 RDM1Q8NG50 284 aa20.31■□□□□ 0.84
CLN6-212ENST00000636020 JPH2Q9BR39 696 aaPredicted RBP20.31■□□□□ 0.84
CLN6-212ENST00000636020 TEKT3Q9BXF9 490 aa20.31■□□□□ 0.84
CLN6-212ENST00000636020 ZMYND12Q9H0C1 365 aa20.31■□□□□ 0.84
CLN6-212ENST00000636020 HCFC1R1Q9NWW0 138 aa20.31■□□□□ 0.84
CLN6-212ENST00000636020 DNMT3BQ9UBC3 853 aaKnown RBP20.31■□□□□ 0.84
CLN6-212ENST00000636020 LAMA1P25391 3075 aa20.3■□□□□ 0.84
CLN6-212ENST00000636020 TDRD15B5MCY1 1934 aaKnown RBP20.3■□□□□ 0.84
CLN6-212ENST00000636020 DDX11L8A8MPP1 907 aa20.3■□□□□ 0.84
CLN6-212ENST00000636020 LRCH2Q5VUJ6 765 aa20.3■□□□□ 0.84
CLN6-212ENST00000636020 MIER3Q7Z3K6 550 aa20.3■□□□□ 0.84
CLN6-212ENST00000636020 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.3■□□□□ 0.84
CLN6-212ENST00000636020 REXO1Q8N1G1 1221 aaKnown RBP20.3■□□□□ 0.84
CLN6-212ENST00000636020 DNASE1L2Q92874 299 aa20.3■□□□□ 0.84
CLN6-212ENST00000636020 GJA10Q969M2 543 aa20.3■□□□□ 0.84
CLN6-212ENST00000636020 EIF2AQ9BY44 585 aaKnown RBP20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms