RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 SHHQ15465 462 aa21.58■■□□□ 1.05
UPF3A-211ENST00000618700 KNOP1Q1ED39 458 aaKnown RBP21.58■■□□□ 1.05
UPF3A-211ENST00000618700 DCAF4L1Q3SXM0 396 aa21.58■■□□□ 1.05
UPF3A-211ENST00000618700 ZNF568Q3ZCX4 644 aa21.58■■□□□ 1.05
UPF3A-211ENST00000618700 HABP4Q5JVS0 413 aaKnown RBP21.58■■□□□ 1.05
UPF3A-211ENST00000618700 ISM2Q6H9L7 571 aa21.58■■□□□ 1.05
UPF3A-211ENST00000618700 ECHDC2Q86YB7 292 aa21.58■■□□□ 1.05
UPF3A-211ENST00000618700 SYAP1Q96A49 352 aaPredicted RBP21.58■■□□□ 1.05
UPF3A-211ENST00000618700 ZBTB45Q96K62 511 aaPredicted RBP21.58■■□□□ 1.05
UPF3A-211ENST00000618700 HAPLN2Q9GZV7 340 aa21.58■■□□□ 1.05
UPF3A-211ENST00000618700 MTIF3Q9H2K0 278 aaKnown RBP21.58■■□□□ 1.05
UPF3A-211ENST00000618700 KCTD10Q9H3F6 313 aa21.58■■□□□ 1.05
UPF3A-211ENST00000618700 ZBBXA8MT70 800 aa21.57■■□□□ 1.04
UPF3A-211ENST00000618700 TGFB1I1O43294 461 aa21.57■■□□□ 1.04
UPF3A-211ENST00000618700 ZNF623O75123 536 aa21.57■■□□□ 1.04
UPF3A-211ENST00000618700 KIF20AO95235 890 aa21.57■■□□□ 1.04
UPF3A-211ENST00000618700 NPTXRO95502 500 aa21.57■■□□□ 1.04
UPF3A-211ENST00000618700 MCF2P10911 925 aa21.57■■□□□ 1.04
UPF3A-211ENST00000618700 SKIP12755 728 aa21.57■■□□□ 1.04
UPF3A-211ENST00000618700 ADSSP30520 456 aa21.57■■□□□ 1.04
UPF3A-211ENST00000618700 PRCPP42785 496 aa21.57■■□□□ 1.04
UPF3A-211ENST00000618700 KCNJ6P48051 423 aa21.57■■□□□ 1.04
UPF3A-211ENST00000618700 NOLC1Q14978 699 aaKnown RBP eCLIP21.57■■□□□ 1.04
UPF3A-211ENST00000618700 ZNF598Q86UK7 904 aaKnown RBP21.57■■□□□ 1.04
UPF3A-211ENST00000618700 SYCP3Q8IZU3 236 aa21.57■■□□□ 1.04
UPF3A-211ENST00000618700 SMG8Q8ND04 991 aaKnown RBP21.57■■□□□ 1.04
UPF3A-211ENST00000618700 ADPGKQ9BRR6 497 aa21.57■■□□□ 1.04
UPF3A-211ENST00000618700 GBP3Q9H0R5 595 aa21.57■■□□□ 1.04
UPF3A-211ENST00000618700 ELAC1Q9H777 363 aaKnown RBP21.57■■□□□ 1.04
UPF3A-211ENST00000618700 ANKFY1Q9P2R3 1169 aa21.57■■□□□ 1.04
UPF3A-211ENST00000618700 MAPK8IP1Q9UQF2 711 aa21.57■■□□□ 1.04
UPF3A-211ENST00000618700 PCDHB2Q9Y5E7 798 aa21.57■■□□□ 1.04
UPF3A-211ENST00000618700 A0A0B4J269 797 aa21.56■■□□□ 1.04
UPF3A-211ENST00000618700 AMHP03971 560 aa21.56■■□□□ 1.04
UPF3A-211ENST00000618700 APBB1IPQ7Z5R6 666 aaPredicted RBP21.56■■□□□ 1.04
UPF3A-211ENST00000618700 MRPL10Q7Z7H8 261 aaKnown RBP21.56■■□□□ 1.04
UPF3A-211ENST00000618700 NPAS4Q8IUM7 802 aa21.56■■□□□ 1.04
UPF3A-211ENST00000618700 ADSSL1Q8N142 457 aa21.56■■□□□ 1.04
UPF3A-211ENST00000618700 RNPC3Q96LT9 517 aaKnown RBP21.56■■□□□ 1.04
UPF3A-211ENST00000618700 AGPAT3Q9NRZ7 376 aa21.56■■□□□ 1.04
UPF3A-211ENST00000618700 TMEM161AQ9NX61 479 aa21.56■■□□□ 1.04
UPF3A-211ENST00000618700 IPPQ9Y573 584 aa21.56■■□□□ 1.04
UPF3A-211ENST00000618700 A0A1W2PPC1 479 aa21.55■■□□□ 1.04
UPF3A-211ENST00000618700 CLDN3O15551 220 aa21.55■■□□□ 1.04
UPF3A-211ENST00000618700 FAM189A1O60320 539 aa21.55■■□□□ 1.04
UPF3A-211ENST00000618700 GARTP22102 1010 aa21.55■■□□□ 1.04
UPF3A-211ENST00000618700 PPP1R2P41236 205 aa21.55■■□□□ 1.04
UPF3A-211ENST00000618700 SNRPFP62306 86 aaKnown RBP21.55■■□□□ 1.04
UPF3A-211ENST00000618700 SLFN12LQ6IEE8 588 aa21.55■■□□□ 1.04
UPF3A-211ENST00000618700 ZBTB33Q86T24 672 aa21.55■■□□□ 1.04
UPF3A-211ENST00000618700 TOP1MTQ969P6 601 aa21.55■■□□□ 1.04
UPF3A-211ENST00000618700 SLC9A7Q96T83 725 aa21.55■■□□□ 1.04
UPF3A-211ENST00000618700 TRIM6Q9C030 488 aaPredicted RBP21.55■■□□□ 1.04
UPF3A-211ENST00000618700 NXF3Q9H4D5 531 aaKnown RBP21.55■■□□□ 1.04
UPF3A-211ENST00000618700 SLC4A7Q9Y6M7 1214 aa21.55■■□□□ 1.04
UPF3A-211ENST00000618700 COL4A6Q14031 1691 aa21.55■■□□□ 1.04
UPF3A-211ENST00000618700 PPP1R3GB7ZBB8 358 aa21.54■■□□□ 1.04
UPF3A-211ENST00000618700 RIOK3O14730 519 aaKnown RBP21.54■■□□□ 1.04
UPF3A-211ENST00000618700 EOMESO95936 686 aa21.54■■□□□ 1.04
UPF3A-211ENST00000618700 ZCWPW2Q504Y3 356 aa21.54■■□□□ 1.04
UPF3A-211ENST00000618700 C12orf56Q8IXR9 622 aa21.54■■□□□ 1.04
UPF3A-211ENST00000618700 CEP120Q8N960 986 aa21.54■■□□□ 1.04
UPF3A-211ENST00000618700 GOLGA5Q8TBA6 731 aa21.54■■□□□ 1.04
UPF3A-211ENST00000618700 PHOSPHO2Q8TCD6 241 aa21.54■■□□□ 1.04
UPF3A-211ENST00000618700 CBWD1Q9BRT8 395 aa21.54■■□□□ 1.04
UPF3A-211ENST00000618700 TCHPQ9BT92 498 aa21.54■■□□□ 1.04
UPF3A-211ENST00000618700 TYW1Q9NV66 732 aaKnown RBP21.54■■□□□ 1.04
UPF3A-211ENST00000618700 CGNQ9P2M7 1197 aaKnown RBP21.54■■□□□ 1.04
UPF3A-211ENST00000618700 HES2Q9Y543 173 aa21.54■■□□□ 1.04
UPF3A-211ENST00000618700 PDXKO00764 312 aa21.53■■□□□ 1.04
UPF3A-211ENST00000618700 HARSP12081 509 aaKnown RBP21.53■■□□□ 1.04
UPF3A-211ENST00000618700 GRM5P41594 1212 aa21.53■■□□□ 1.04
UPF3A-211ENST00000618700 HS2ST1Q7LGA3 356 aa21.53■■□□□ 1.04
UPF3A-211ENST00000618700 TDHQ8IZJ6 230 aa21.53■■□□□ 1.04
UPF3A-211ENST00000618700 TMEM174Q8WUU8 243 aa21.53■■□□□ 1.04
UPF3A-211ENST00000618700 POMGNT1Q8WZA1 660 aa21.53■■□□□ 1.04
UPF3A-211ENST00000618700 SEMA6BQ9H3T3 888 aa21.53■■□□□ 1.04
UPF3A-211ENST00000618700 RNF19AQ9NV58 838 aa21.53■■□□□ 1.04
UPF3A-211ENST00000618700 TRAF3IP3Q9Y228 551 aa21.53■■□□□ 1.04
UPF3A-211ENST00000618700 MEIS3P2A8K0S8 358 aa21.52■■□□□ 1.04
UPF3A-211ENST00000618700 OGTO15294 1046 aa21.52■■□□□ 1.04
UPF3A-211ENST00000618700 STAG3L1P0CL83 205 aa21.52■■□□□ 1.04
UPF3A-211ENST00000618700 ATP2A2P16615 1042 aaKnown RBP21.52■■□□□ 1.04
UPF3A-211ENST00000618700 MATR3P43243 847 aaKnown RBP eCLIP21.52■■□□□ 1.04
UPF3A-211ENST00000618700 PSEN1P49768 467 aa21.52■■□□□ 1.04
UPF3A-211ENST00000618700 NLRP12P59046 1061 aa21.52■■□□□ 1.04
UPF3A-211ENST00000618700 STIM1Q13586 685 aa21.52■■□□□ 1.04
UPF3A-211ENST00000618700 DPCR1Q3MIW9 517 aa21.52■■□□□ 1.04
UPF3A-211ENST00000618700 CENPPQ6IPU0 288 aa21.52■■□□□ 1.04
UPF3A-211ENST00000618700 ARMCX5Q6P1M9 558 aa21.52■■□□□ 1.04
UPF3A-211ENST00000618700 AGMOQ6ZNB7 445 aa21.52■■□□□ 1.04
UPF3A-211ENST00000618700 TMCO2Q7Z6W1 182 aaPredicted RBP21.52■■□□□ 1.04
UPF3A-211ENST00000618700 PGBD4Q96DM1 585 aa21.52■■□□□ 1.04
UPF3A-211ENST00000618700 MSTO1Q9BUK6 570 aa21.52■■□□□ 1.04
UPF3A-211ENST00000618700 RC3H2Q9HBD1 1191 aaKnown RBP21.52■■□□□ 1.04
UPF3A-211ENST00000618700 PSMA7O14818 248 aa21.51■■□□□ 1.03
UPF3A-211ENST00000618700 KIAA0391O15091 583 aaKnown RBP21.51■■□□□ 1.03
UPF3A-211ENST00000618700 GJB5O95377 273 aa21.51■■□□□ 1.03
UPF3A-211ENST00000618700 SLC34A2O95436 690 aa21.51■■□□□ 1.03
UPF3A-211ENST00000618700 ITGA4P13612 1032 aa21.51■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms