RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 HOXA2O43364 376 aa11.02□□□□□ -0.65
UPF1-213ENST00000601981 GCNT3O95395 438 aa11.02□□□□□ -0.65
UPF1-213ENST00000601981 ATP2A2P16615 1042 aaKnown RBP11.02□□□□□ -0.65
UPF1-213ENST00000601981 CDK11BP21127 795 aaKnown RBP11.02□□□□□ -0.65
UPF1-213ENST00000601981 CCNE1P24864 410 aa11.02□□□□□ -0.65
UPF1-213ENST00000601981 STX17P56962 302 aa11.02□□□□□ -0.65
UPF1-213ENST00000601981 UBASH3AP57075 661 aa11.02□□□□□ -0.65
UPF1-213ENST00000601981 STK4Q13043 487 aa11.02□□□□□ -0.65
UPF1-213ENST00000601981 MAPK8IP2Q13387 824 aaPredicted RBP11.02□□□□□ -0.65
UPF1-213ENST00000601981 TPD52L1Q16890 204 aaPredicted RBP11.02□□□□□ -0.65
UPF1-213ENST00000601981 DCAF4L1Q3SXM0 396 aa11.02□□□□□ -0.65
UPF1-213ENST00000601981 FAM26FQ5R3K3 315 aa11.02□□□□□ -0.65
UPF1-213ENST00000601981 C9orf50Q5SZB4 431 aa11.02□□□□□ -0.65
UPF1-213ENST00000601981 SLC27A1Q6PCB7 646 aa11.02□□□□□ -0.65
UPF1-213ENST00000601981 FOXR2Q6PJQ5 311 aa11.02□□□□□ -0.65
UPF1-213ENST00000601981 GUF1Q8N442 669 aaKnown RBP11.02□□□□□ -0.65
UPF1-213ENST00000601981 KIAA0895Q8NCT3 520 aa11.02□□□□□ -0.65
UPF1-213ENST00000601981 RSPH1Q8WYR4 309 aa11.02□□□□□ -0.65
UPF1-213ENST00000601981 KCNN1Q92952 543 aa11.02□□□□□ -0.65
UPF1-213ENST00000601981 PGBD4Q96DM1 585 aa11.02□□□□□ -0.65
UPF1-213ENST00000601981 ZBED2Q9BTP6 218 aa11.02□□□□□ -0.65
UPF1-213ENST00000601981 TRAIPQ9BWF2 469 aa11.02□□□□□ -0.65
UPF1-213ENST00000601981 CCDC113Q9H0I3 377 aa11.02□□□□□ -0.65
UPF1-213ENST00000601981 SAMSN1Q9NSI8 373 aaKnown RBP11.02□□□□□ -0.65
UPF1-213ENST00000601981 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.02□□□□□ -0.65
UPF1-213ENST00000601981 UBE4BO95155 1302 aa11.02□□□□□ -0.65
UPF1-213ENST00000601981 TDRD15B5MCY1 1934 aaKnown RBP11.01□□□□□ -0.65
UPF1-213ENST00000601981 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.01□□□□□ -0.65
UPF1-213ENST00000601981 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.01□□□□□ -0.65
UPF1-213ENST00000601981 ENPP3O14638 875 aa11.01□□□□□ -0.65
UPF1-213ENST00000601981 HNRNPDLO14979 420 aaKnown RBP11.01□□□□□ -0.65
UPF1-213ENST00000601981 EIF3DO15371 548 aaKnown RBP eCLIP11.01□□□□□ -0.65
UPF1-213ENST00000601981 ARF4P18085 180 aaPredicted RBP11.01□□□□□ -0.65
UPF1-213ENST00000601981 MSNP26038 577 aaKnown RBP11.01□□□□□ -0.65
UPF1-213ENST00000601981 NMT1P30419 496 aaKnown RBP11.01□□□□□ -0.65
UPF1-213ENST00000601981 MATR3P43243 847 aaKnown RBP eCLIP11.01□□□□□ -0.65
UPF1-213ENST00000601981 LIG4P49917 911 aa11.01□□□□□ -0.65
UPF1-213ENST00000601981 GSDMDP57764 484 aa11.01□□□□□ -0.65
UPF1-213ENST00000601981 GTF2BQ00403 316 aa11.01□□□□□ -0.65
UPF1-213ENST00000601981 DSC3Q14574 896 aa11.01□□□□□ -0.65
UPF1-213ENST00000601981 AMHR2Q16671 573 aa11.01□□□□□ -0.65
UPF1-213ENST00000601981 ATF7IP2Q5U623 682 aa11.01□□□□□ -0.65
UPF1-213ENST00000601981 RASIP1Q5U651 963 aa11.01□□□□□ -0.65
UPF1-213ENST00000601981 TTI2Q6NXR4 508 aa11.01□□□□□ -0.65
UPF1-213ENST00000601981 ZPBP2Q6X784 338 aa11.01□□□□□ -0.65
UPF1-213ENST00000601981 ZNF720Q7Z2F6 126 aa11.01□□□□□ -0.65
UPF1-213ENST00000601981 NPAS4Q8IUM7 802 aa11.01□□□□□ -0.65
UPF1-213ENST00000601981 SYCP3Q8IZU3 236 aa11.01□□□□□ -0.65
UPF1-213ENST00000601981 P2RX5Q93086 422 aa11.01□□□□□ -0.65
UPF1-213ENST00000601981 VWCEQ96DN2 955 aa11.01□□□□□ -0.65
UPF1-213ENST00000601981 CPB2Q96IY4 423 aa11.01□□□□□ -0.65
UPF1-213ENST00000601981 ACCSQ96QU6 501 aa11.01□□□□□ -0.65
UPF1-213ENST00000601981 TCHPQ9BT92 498 aa11.01□□□□□ -0.65
UPF1-213ENST00000601981 OSBPL7Q9BZF2 842 aa11.01□□□□□ -0.65
UPF1-213ENST00000601981 TMX1Q9H3N1 280 aa11.01□□□□□ -0.65
UPF1-213ENST00000601981 THAP9Q9H5L6 903 aa11.01□□□□□ -0.65
UPF1-213ENST00000601981 ELAC1Q9H777 363 aaKnown RBP11.01□□□□□ -0.65
UPF1-213ENST00000601981 TMEM206Q9H813 350 aa11.01□□□□□ -0.65
UPF1-213ENST00000601981 TMEM161AQ9NX61 479 aa11.01□□□□□ -0.65
UPF1-213ENST00000601981 TBC1D7Q9P0N9 293 aa11.01□□□□□ -0.65
UPF1-213ENST00000601981 TBX20Q9UMR3 447 aa11.01□□□□□ -0.65
UPF1-213ENST00000601981 TNFSF13BQ9Y275 285 aa11.01□□□□□ -0.65
UPF1-213ENST00000601981 PCDHB7Q9Y5E2 793 aa11.01□□□□□ -0.65
UPF1-213ENST00000601981 FNDC1Q4ZHG4 1894 aaPredicted RBP11.01□□□□□ -0.65
UPF1-213ENST00000601981 TRIP11Q15643 1979 aa11□□□□□ -0.65
UPF1-213ENST00000601981 A0A0U1RQF3 1178 aa11□□□□□ -0.65
UPF1-213ENST00000601981 A0A1B0GTH6 734 aa11□□□□□ -0.65
UPF1-213ENST00000601981 A0A1B0GUA9 196 aa11□□□□□ -0.65
UPF1-213ENST00000601981 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11□□□□□ -0.65
UPF1-213ENST00000601981 C9IYK1 514 aa11□□□□□ -0.65
UPF1-213ENST00000601981 B4GALT5O43286 388 aa11□□□□□ -0.65
UPF1-213ENST00000601981 MGEA5O60502 916 aa11□□□□□ -0.65
UPF1-213ENST00000601981 EOMESO95936 686 aa11□□□□□ -0.65
UPF1-213ENST00000601981 IBSPP21815 317 aaPredicted RBP11□□□□□ -0.65
UPF1-213ENST00000601981 HSP90AA2PQ14568 343 aaPredicted RBP11□□□□□ -0.65
UPF1-213ENST00000601981 RAB30Q15771 203 aa11□□□□□ -0.65
UPF1-213ENST00000601981 KYAT1Q16773 422 aa11□□□□□ -0.65
UPF1-213ENST00000601981 ZNF568Q3ZCX4 644 aa11□□□□□ -0.65
UPF1-213ENST00000601981 APTXQ7Z2E3 356 aaKnown RBP11□□□□□ -0.65
UPF1-213ENST00000601981 CCDC186Q7Z3E2 898 aa11□□□□□ -0.65
UPF1-213ENST00000601981 MAP4K3Q8IVH8 894 aa11□□□□□ -0.65
UPF1-213ENST00000601981 VSTM4Q8IW00 320 aa11□□□□□ -0.65
UPF1-213ENST00000601981 ABI1Q8IZP0 508 aa11□□□□□ -0.65
UPF1-213ENST00000601981 ANKRD20A12PQ8NF67 263 aa11□□□□□ -0.65
UPF1-213ENST00000601981 TOP1MTQ969P6 601 aa11□□□□□ -0.65
UPF1-213ENST00000601981 SLC39A2Q9NP94 309 aa11□□□□□ -0.65
UPF1-213ENST00000601981 UBN1Q9NPG3 1134 aa11□□□□□ -0.65
UPF1-213ENST00000601981 FAM105AQ9NUU6 356 aa11□□□□□ -0.65
UPF1-213ENST00000601981 EIF2AK3Q9NZJ5 1116 aaKnown RBP11□□□□□ -0.65
UPF1-213ENST00000601981 CXXC1Q9P0U4 656 aaPredicted RBP11□□□□□ -0.65
UPF1-213ENST00000601981 LIMA1Q9UHB6 759 aaKnown RBP11□□□□□ -0.65
UPF1-213ENST00000601981 MSRAQ9UJ68 235 aa11□□□□□ -0.65
UPF1-213ENST00000601981 MAPK8IP1Q9UQF2 711 aa11□□□□□ -0.65
UPF1-213ENST00000601981 TRIOBPQ9H2D6 2365 aa11□□□□□ -0.65
UPF1-213ENST00000601981 NLRC5Q86WI3 1866 aa11□□□□□ -0.65
UPF1-213ENST00000601981 CLDN3O15551 220 aa10.99□□□□□ -0.65
UPF1-213ENST00000601981 TLL1O43897 1013 aa10.99□□□□□ -0.65
UPF1-213ENST00000601981 ZNF623O75123 536 aa10.99□□□□□ -0.65
UPF1-213ENST00000601981 TOM1L1O75674 476 aa10.99□□□□□ -0.65
UPF1-213ENST00000601981 UPP2O95045 317 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms