RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 PIK3AP1Q6ZUJ8 805 aa13.92□□□□□ -0.18
TRIM28-212ENST00000597995 FRMD5Q7Z6J6 570 aa13.92□□□□□ -0.18
TRIM28-212ENST00000597995 HACE1Q8IYU2 909 aa13.92□□□□□ -0.18
TRIM28-212ENST00000597995 SIX5Q8N196 739 aa13.92□□□□□ -0.18
TRIM28-212ENST00000597995 DYDC2Q96IM9 177 aa13.92□□□□□ -0.18
TRIM28-212ENST00000597995 EIF2AQ9BY44 585 aaKnown RBP13.92□□□□□ -0.18
TRIM28-212ENST00000597995 RNF39Q9H2S5 420 aa13.92□□□□□ -0.18
TRIM28-212ENST00000597995 PLEKHA4Q9H4M7 779 aa13.92□□□□□ -0.18
TRIM28-212ENST00000597995 XPNPEP1Q9NQW7 623 aa13.92□□□□□ -0.18
TRIM28-212ENST00000597995 BMP2KQ9NSY1 1161 aaPredicted RBP13.92□□□□□ -0.18
TRIM28-212ENST00000597995 MIOSQ9NXC5 875 aa13.92□□□□□ -0.18
TRIM28-212ENST00000597995 GIT1Q9Y2X7 761 aa13.92□□□□□ -0.18
TRIM28-212ENST00000597995 VPS13AQ96RL7 3174 aa13.92□□□□□ -0.18
TRIM28-212ENST00000597995 CLUHO75153 1309 aa13.91□□□□□ -0.18
TRIM28-212ENST00000597995 INO80B-WBP1J3KQ70 363 aa13.91□□□□□ -0.18
TRIM28-212ENST00000597995 ZBTB39O15060 712 aa13.91□□□□□ -0.18
TRIM28-212ENST00000597995 N4BP1O75113 896 aaKnown RBP13.91□□□□□ -0.18
TRIM28-212ENST00000597995 SLITRK3O94933 977 aa13.91□□□□□ -0.18
TRIM28-212ENST00000597995 MLH1P40692 756 aa13.91□□□□□ -0.18
TRIM28-212ENST00000597995 CTTNQ14247 550 aaKnown RBP13.91□□□□□ -0.18
TRIM28-212ENST00000597995 NCAPH2Q6IBW4 605 aa13.91□□□□□ -0.18
TRIM28-212ENST00000597995 POTEDQ86YR6 584 aa13.91□□□□□ -0.18
TRIM28-212ENST00000597995 TPH2Q8IWU9 490 aa13.91□□□□□ -0.18
TRIM28-212ENST00000597995 DTWD2Q8NBA8 298 aa13.91□□□□□ -0.18
TRIM28-212ENST00000597995 NFKBIZQ9BYH8 718 aa13.91□□□□□ -0.18
TRIM28-212ENST00000597995 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.91□□□□□ -0.18
TRIM28-212ENST00000597995 ANKEF1Q9NU02 776 aa13.91□□□□□ -0.18
TRIM28-212ENST00000597995 ZDHHC7Q9NXF8 308 aa13.91□□□□□ -0.18
TRIM28-212ENST00000597995 FNIP2Q9P278 1114 aa13.91□□□□□ -0.18
TRIM28-212ENST00000597995 SPTBN4Q9H254 2564 aa13.91□□□□□ -0.18
TRIM28-212ENST00000597995 WNT7AO00755 349 aa13.9□□□□□ -0.18
TRIM28-212ENST00000597995 EIF5BO60841 1220 aaKnown RBP13.9□□□□□ -0.18
TRIM28-212ENST00000597995 DGAT1O75907 488 aa13.9□□□□□ -0.18
TRIM28-212ENST00000597995 ARF4P18085 180 aaPredicted RBP13.9□□□□□ -0.18
TRIM28-212ENST00000597995 GBP2P32456 591 aaPredicted RBP13.9□□□□□ -0.18
TRIM28-212ENST00000597995 ARL2P36404 184 aa13.9□□□□□ -0.18
TRIM28-212ENST00000597995 SCNN1GP51170 649 aa13.9□□□□□ -0.18
TRIM28-212ENST00000597995 CYP4A11Q02928 519 aa13.9□□□□□ -0.18
TRIM28-212ENST00000597995 MBTD1Q05BQ5 628 aa13.9□□□□□ -0.18
TRIM28-212ENST00000597995 ANGPT1Q15389 498 aa13.9□□□□□ -0.18
TRIM28-212ENST00000597995 AMHR2Q16671 573 aa13.9□□□□□ -0.18
TRIM28-212ENST00000597995 SLC44A3Q8N4M1 653 aa13.9□□□□□ -0.18
TRIM28-212ENST00000597995 SMG7Q92540 1137 aaKnown RBP13.9□□□□□ -0.18
TRIM28-212ENST00000597995 ZNF707Q96C28 371 aaPredicted RBP13.9□□□□□ -0.18
TRIM28-212ENST00000597995 CPB2Q96IY4 423 aa13.9□□□□□ -0.18
TRIM28-212ENST00000597995 ZFP42Q96MM3 310 aa13.9□□□□□ -0.18
TRIM28-212ENST00000597995 HSD17B14Q9BPX1 270 aa13.9□□□□□ -0.18
TRIM28-212ENST00000597995 TRIM6Q9C030 488 aaPredicted RBP13.9□□□□□ -0.18
TRIM28-212ENST00000597995 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.9□□□□□ -0.18
TRIM28-212ENST00000597995 PCDHA12Q9UN75 941 aa13.9□□□□□ -0.18
TRIM28-212ENST00000597995 HES2Q9Y543 173 aa13.9□□□□□ -0.18
TRIM28-212ENST00000597995 ZMYM2Q9UBW7 1377 aa13.9□□□□□ -0.18
TRIM28-212ENST00000597995 MTCL1Q9Y4B5 1905 aaKnown RBP13.9□□□□□ -0.18
TRIM28-212ENST00000597995 NARSO43776 548 aaKnown RBP13.89□□□□□ -0.19
TRIM28-212ENST00000597995 RFPL2O75678 378 aa13.89□□□□□ -0.19
TRIM28-212ENST00000597995 SRFP11831 508 aa13.89□□□□□ -0.19
TRIM28-212ENST00000597995 FOSBP53539 338 aa13.89□□□□□ -0.19
TRIM28-212ENST00000597995 CREMQ03060 361 aa13.89□□□□□ -0.19
TRIM28-212ENST00000597995 CAPSQ13938 189 aa13.89□□□□□ -0.19
TRIM28-212ENST00000597995 USP41Q3LFD5 358 aa13.89□□□□□ -0.19
TRIM28-212ENST00000597995 FUT10Q6P4F1 479 aa13.89□□□□□ -0.19
TRIM28-212ENST00000597995 LILRA6Q6PI73 481 aa13.89□□□□□ -0.19
TRIM28-212ENST00000597995 GSTCDQ8NEC7 633 aa13.89□□□□□ -0.19
TRIM28-212ENST00000597995 RSAD2Q8WXG1 361 aa13.89□□□□□ -0.19
TRIM28-212ENST00000597995 WASF1Q92558 559 aa13.89□□□□□ -0.19
TRIM28-212ENST00000597995 MYADMQ96S97 322 aa13.89□□□□□ -0.19
TRIM28-212ENST00000597995 EIF2AK1Q9BQI3 630 aaKnown RBP13.89□□□□□ -0.19
TRIM28-212ENST00000597995 GPR62Q9BZJ7 368 aa13.89□□□□□ -0.19
TRIM28-212ENST00000597995 NT5C3AQ9H0P0 336 aa13.89□□□□□ -0.19
TRIM28-212ENST00000597995 SEMA4AQ9H3S1 761 aa13.89□□□□□ -0.19
TRIM28-212ENST00000597995 PIDD1Q9HB75 910 aa13.89□□□□□ -0.19
TRIM28-212ENST00000597995 TDRD15B5MCY1 1934 aaKnown RBP13.89□□□□□ -0.19
TRIM28-212ENST00000597995 DOCK8Q8NF50 2099 aa13.89□□□□□ -0.19
TRIM28-212ENST00000597995 ARID2Q68CP9 1835 aa13.88□□□□□ -0.19
TRIM28-212ENST00000597995 A0A1B0GUA9 196 aa13.88□□□□□ -0.19
TRIM28-212ENST00000597995 KRBA1A5PL33 1030 aa13.88□□□□□ -0.19
TRIM28-212ENST00000597995 BTBD18B2RXH4 712 aa13.88□□□□□ -0.19
TRIM28-212ENST00000597995 STK25O00506 426 aa13.88□□□□□ -0.19
TRIM28-212ENST00000597995 TGM5O43548 720 aa13.88□□□□□ -0.19
TRIM28-212ENST00000597995 CFHP08603 1231 aa13.88□□□□□ -0.19
TRIM28-212ENST00000597995 XRCC6P12956 609 aaKnown RBP eCLIP13.88□□□□□ -0.19
TRIM28-212ENST00000597995 LAMP2P13473 410 aa13.88□□□□□ -0.19
TRIM28-212ENST00000597995 KRT2P35908 639 aa13.88□□□□□ -0.19
TRIM28-212ENST00000597995 RARRES1P49788 294 aa13.88□□□□□ -0.19
TRIM28-212ENST00000597995 GRIK3Q13003 919 aa13.88□□□□□ -0.19
TRIM28-212ENST00000597995 PHLDB3Q6NSJ2 640 aa13.88□□□□□ -0.19
TRIM28-212ENST00000597995 SLC27A1Q6PCB7 646 aa13.88□□□□□ -0.19
TRIM28-212ENST00000597995 PALB2Q86YC2 1186 aa13.88□□□□□ -0.19
TRIM28-212ENST00000597995 ADSSL1Q8N142 457 aa13.88□□□□□ -0.19
TRIM28-212ENST00000597995 ASAP3Q8TDY4 903 aa13.88□□□□□ -0.19
TRIM28-212ENST00000597995 APOL6Q9BWW8 343 aa13.88□□□□□ -0.19
TRIM28-212ENST00000597995 PRKD2Q9BZL6 878 aa13.88□□□□□ -0.19
TRIM28-212ENST00000597995 NXF3Q9H4D5 531 aaKnown RBP13.88□□□□□ -0.19
TRIM28-212ENST00000597995 ADAM28Q9UKQ2 775 aa13.88□□□□□ -0.19
TRIM28-212ENST00000597995 LIMCH1Q9UPQ0 1083 aa13.88□□□□□ -0.19
TRIM28-212ENST00000597995 ZFP37Q9Y6Q3 630 aaPredicted RBP13.88□□□□□ -0.19
TRIM28-212ENST00000597995 ANHXE9PGG2 379 aa13.87□□□□□ -0.19
TRIM28-212ENST00000597995 F8W810 466 aa13.87□□□□□ -0.19
TRIM28-212ENST00000597995 ZMYND10O75800 440 aa13.87□□□□□ -0.19
TRIM28-212ENST00000597995 SPATA31D3P0C874 917 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms