RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 C1orf159Q96HA4 380 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 C12orf65Q9H3J6 166 aaKnown RBP2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 SP110Q9HB58 689 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 ZIM2Q9NZV7 527 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 CLEC1BQ9P126 229 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 MYOTQ9UBF9 498 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 ZBTB21Q9ULJ3 1066 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 MAPRE3Q9UPY8 281 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 PMS2P1A4D2B8 440 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 IL33O95760 270 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 IGFBP6P24592 240 aaPredicted RBP2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 STAT3P40763 770 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 NFATC3Q12968 1075 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 FNDC3BQ53EP0 1204 aaKnown RBP2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 RNF219Q5W0B1 726 aaPredicted RBP2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 CREB3L3Q68CJ9 461 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 CCSAPQ6IQ19 270 aaPredicted RBP2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 MAMDC2Q7Z304 686 aaPredicted RBP2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 SPATS2Q86XZ4 545 aaKnown RBP2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 SMC5Q8IY18 1101 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 C1QTNF3Q9BXJ4 246 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 ARHGAP20Q9P2F6 1191 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 MRPS23Q9Y3D9 190 aaKnown RBP2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 NFAT5O94916 1531 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 GLTPD2A6NH11 291 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 GOLGA6L6A8MZA4 724 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 CKMP06732 381 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 POU3F2P20265 443 aaPredicted RBP2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 MAKP20794 623 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 INHBEP58166 350 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 GRM1Q13255 1194 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 EMC4Q5J8M3 183 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 L1TD1Q5T7N2 865 aaKnown RBP2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 ANO1Q5XXA6 986 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 TIGD7Q6NT04 549 aaPredicted RBP2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 PGM2L1Q6PCE3 622 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 ZNF354CQ86Y25 554 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 RPGRQ92834 1020 aaKnown RBP2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 ARL8AQ96BM9 186 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 SCLT1Q96NL6 688 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 PLCD4Q9BRC7 762 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 MRIQ9BWK5 157 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 MRPL4Q9BYD3 311 aaKnown RBP2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 PUF60Q9UHX1 559 aaKnown RBP2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 INVSQ9Y283 1065 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 STXBP5LQ9Y2K9 1186 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 KNSTRNQ9Y448 316 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 E2F8A0AVK6 867 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 TSPAN6O43657 245 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 LDHAP00338 332 aaKnown RBP2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 PLS3P13797 630 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 XPAP23025 273 aaPredicted RBP2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 KPNA1P52294 538 aaPredicted RBP2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 TM4SF20Q53R12 229 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 CPNE8Q86YQ8 564 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 IP6K1Q92551 441 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 C8orf48Q96LL4 319 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 LMF1Q96S06 567 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 MTA3Q9BTC8 594 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 IFT22Q9H7X7 185 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 AKAP11Q9UKA4 1901 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 LTN1O94822 1766 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 WDR17Q8IZU2 1322 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 MFAP3LO75121 409 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 ZNF623O75123 536 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 SCGB1D2O95969 90 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 MT-CO1P00395 513 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 FSHBP01225 129 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 KRT1P04264 644 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 POLR2BP30876 1174 aaKnown RBP2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 ECE1P42892 770 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 KCNJ4P48050 445 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 DNM2P50570 870 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 GABREP78334 506 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 TMED8Q6PL24 325 aaPredicted RBP2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 AFAP1L2Q8N4X5 818 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 PPM1EQ8WY54 764 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 PMM1Q92871 262 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 TSR2Q969E8 191 aaKnown RBP2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 FBXW5Q969U6 566 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 TARS2Q9BW92 718 aaKnown RBP2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 KRTAP4-7Q9BYR0 210 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 REXO4Q9GZR2 422 aaKnown RBP2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 KLC2Q9H0B6 622 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 FAM50BQ9Y247 325 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 LUC7L2Q9Y383 392 aaKnown RBP2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 DDX3XO00571 662 aaKnown RBP eCLIP2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 NRP1O14786 923 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 MAFO75444 373 aaPredicted RBP2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 IPO13O94829 963 aaKnown RBP2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 EPHX1P07099 455 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 HOXB7P09629 217 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 IGFALSP35858 605 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 CDKN1CP49918 316 aaPredicted RBP2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 NEK2P51955 445 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 PPP2R2AP63151 447 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 ZNF174Q15697 407 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 TRIM61Q5EBN2 209 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 SYCP2LQ5T4T6 812 aa2.31□□□□□ -2.04
SMCHD1-211ENST00000584897 PIK3R6Q5UE93 754 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms