RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 ESPNLQ6ZVH7 1005 aa4.96□□□□□ -1.62
SMCHD1-209ENST00000583441 AMOTL1Q8IY63 956 aa4.96□□□□□ -1.62
SMCHD1-209ENST00000583441 HIPK4Q8NE63 616 aa4.96□□□□□ -1.62
SMCHD1-209ENST00000583441 ASB15Q8WXK1 588 aa4.96□□□□□ -1.62
SMCHD1-209ENST00000583441 ANKS1AQ92625 1134 aa4.96□□□□□ -1.62
SMCHD1-209ENST00000583441 PGBD4Q96DM1 585 aa4.96□□□□□ -1.62
SMCHD1-209ENST00000583441 MAML3Q96JK9 1138 aa4.96□□□□□ -1.62
SMCHD1-209ENST00000583441 GBP4Q96PP9 640 aa4.96□□□□□ -1.62
SMCHD1-209ENST00000583441 MNTQ99583 582 aa4.96□□□□□ -1.62
SMCHD1-209ENST00000583441 C14orf119Q9NWQ9 140 aa4.96□□□□□ -1.62
SMCHD1-209ENST00000583441 CHPF2Q9P2E5 772 aa4.96□□□□□ -1.62
SMCHD1-209ENST00000583441 THRAP3Q9Y2W1 955 aaKnown RBP4.96□□□□□ -1.62
SMCHD1-209ENST00000583441 MRFAP1Q9Y605 127 aa4.96□□□□□ -1.62
SMCHD1-209ENST00000583441 COL11A2P13942 1736 aaPredicted RBP4.96□□□□□ -1.62
SMCHD1-209ENST00000583441 A0A0G2JNJ9 132 aa4.95□□□□□ -1.62
SMCHD1-209ENST00000583441 KLRG2A4D1S0 409 aaPredicted RBP4.95□□□□□ -1.62
SMCHD1-209ENST00000583441 TRIM75PA6NK02 468 aa4.95□□□□□ -1.62
SMCHD1-209ENST00000583441 MMEP08473 750 aa4.95□□□□□ -1.62
SMCHD1-209ENST00000583441 CBSLP0DN79 551 aa4.95□□□□□ -1.62
SMCHD1-209ENST00000583441 CBSP35520 551 aa4.95□□□□□ -1.62
SMCHD1-209ENST00000583441 ROM1Q03395 351 aa4.95□□□□□ -1.62
SMCHD1-209ENST00000583441 PPP2R5AQ15172 486 aa4.95□□□□□ -1.62
SMCHD1-209ENST00000583441 NFE2Q16621 373 aaPredicted RBP4.95□□□□□ -1.62
SMCHD1-209ENST00000583441 INAVAQ3KP66 663 aa4.95□□□□□ -1.62
SMCHD1-209ENST00000583441 FKBP15Q5T1M5 1219 aa4.95□□□□□ -1.62
SMCHD1-209ENST00000583441 WDR48Q8TAF3 677 aa4.95□□□□□ -1.62
SMCHD1-209ENST00000583441 CALML6Q8TD86 181 aa4.95□□□□□ -1.62
SMCHD1-209ENST00000583441 FOXB1Q99853 325 aa4.95□□□□□ -1.62
SMCHD1-209ENST00000583441 LRFN3Q9BTN0 628 aa4.95□□□□□ -1.62
SMCHD1-209ENST00000583441 CCDC8Q9H0W5 538 aaPredicted RBP4.95□□□□□ -1.62
SMCHD1-209ENST00000583441 AASDHPPTQ9NRN7 309 aa4.95□□□□□ -1.62
SMCHD1-209ENST00000583441 Q9UFV3 132 aa4.95□□□□□ -1.62
SMCHD1-209ENST00000583441 MSRAQ9UJ68 235 aa4.95□□□□□ -1.62
SMCHD1-209ENST00000583441 CNTNAP2Q9UHC6 1331 aa4.95□□□□□ -1.62
SMCHD1-209ENST00000583441 ST20-MTHFSA0A0A6YYL1 179 aa4.94□□□□□ -1.62
SMCHD1-209ENST00000583441 RASSF10A6NK89 507 aa4.94□□□□□ -1.62
SMCHD1-209ENST00000583441 GOLGA8AA7E2F4 631 aa4.94□□□□□ -1.62
SMCHD1-209ENST00000583441 GOLGA8BA8MQT2 603 aa4.94□□□□□ -1.62
SMCHD1-209ENST00000583441 SNUPNO95149 360 aaKnown RBP4.94□□□□□ -1.62
SMCHD1-209ENST00000583441 U2AF1L5P0DN76 240 aaPredicted RBP4.94□□□□□ -1.62
SMCHD1-209ENST00000583441 MYBL2P10244 700 aa4.94□□□□□ -1.62
SMCHD1-209ENST00000583441 PTGS1P23219 599 aa4.94□□□□□ -1.62
SMCHD1-209ENST00000583441 CCND1P24385 295 aa4.94□□□□□ -1.62
SMCHD1-209ENST00000583441 U2AF1Q01081 240 aaKnown RBP eCLIP4.94□□□□□ -1.62
SMCHD1-209ENST00000583441 SAFB2Q14151 953 aaKnown RBP eCLIP4.94□□□□□ -1.62
SMCHD1-209ENST00000583441 ABCB5Q2M3G0 1257 aa4.94□□□□□ -1.62
SMCHD1-209ENST00000583441 CBARPQ8N350 705 aaPredicted RBP4.94□□□□□ -1.62
SMCHD1-209ENST00000583441 C1orf162Q8NEQ5 155 aaPredicted RBP4.94□□□□□ -1.62
SMCHD1-209ENST00000583441 LMBR1Q8WVP7 490 aa4.94□□□□□ -1.62
SMCHD1-209ENST00000583441 RTF1Q92541 710 aaKnown RBP4.94□□□□□ -1.62
SMCHD1-209ENST00000583441 FERMT2Q96AC1 680 aa4.94□□□□□ -1.62
SMCHD1-209ENST00000583441 FUBP3Q96I24 572 aaKnown RBP eCLIP4.94□□□□□ -1.62
SMCHD1-209ENST00000583441 VTA1Q9NP79 307 aa4.94□□□□□ -1.62
SMCHD1-209ENST00000583441 TOPORSQ9NS56 1045 aaPredicted RBP4.94□□□□□ -1.62
SMCHD1-209ENST00000583441 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 GOLGA6L22H0YM25 854 aa4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 AKAP10O43572 662 aa4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 PRLP01236 227 aa4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 RBP3P10745 1247 aa4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 MTHFD2P13995 350 aa4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 VCAM1P19320 739 aa4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 ENPP1P22413 925 aa4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 ZEB1P37275 1124 aaPredicted RBP4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 IARSP41252 1262 aaKnown RBP4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 RECQLP46063 649 aaPredicted RBP4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 AVPR1BP47901 424 aa4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 RABGGTBP53611 331 aa4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 ALDH6A1Q02252 535 aaKnown RBP4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 FSCN1Q16658 493 aaKnown RBP4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 PTPN21Q16825 1174 aa4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 TMEM240Q5SV17 173 aa4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 KRTAP5-4Q6L8H1 288 aa4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 FAM111BQ6SJ93 734 aa4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 NOL8Q76FK4 1167 aaKnown RBP4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 RTN4RL1Q86UN2 441 aaPredicted RBP4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 PNMA8AQ86V59 439 aaPredicted RBP4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 CXorf67Q86X51 503 aaPredicted RBP4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 FMNL3Q8IVF7 1028 aa4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 LCORLQ8N3X6 602 aa4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 ATXN2LQ8WWM7 1075 aaKnown RBP4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 RSAD2Q8WXG1 361 aa4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 RPGRQ92834 1020 aaKnown RBP4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 HOOK2Q96ED9 719 aa4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 TUBGCP5Q96RT8 1024 aa4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 ORAI2Q96SN7 254 aa4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 CDH19Q9H159 772 aa4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 TCF7L1Q9HCS4 588 aa4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 INCENPQ9NQS7 918 aa4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 GEMIN8Q9NWZ8 242 aaKnown RBP4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 MKS1Q9NXB0 559 aa4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 BTBD7Q9P203 1132 aa4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 TNKSO95271 1327 aa4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 SETD1BQ9UPS6 1966 aaKnown RBP4.93□□□□□ -1.62
SMCHD1-209ENST00000583441 PRAMEF22A3QJZ6 481 aa4.92□□□□□ -1.62
SMCHD1-209ENST00000583441 TSPAN6O43657 245 aa4.92□□□□□ -1.62
SMCHD1-209ENST00000583441 MAFO75444 373 aaPredicted RBP4.92□□□□□ -1.62
SMCHD1-209ENST00000583441 MT-CO1P00395 513 aa4.92□□□□□ -1.62
SMCHD1-209ENST00000583441 LAG3P18627 525 aa4.92□□□□□ -1.62
SMCHD1-209ENST00000583441 RAB27AP51159 221 aa4.92□□□□□ -1.62
SMCHD1-209ENST00000583441 MANFP55145 182 aaKnown RBP4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms