RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 CPZQ66K79 652 aa6.78□□□□□ -1.32
VPS53-219ENST00000576019 FAM180BQ6P0A1 224 aa6.78□□□□□ -1.32
VPS53-219ENST00000576019 ACAD11Q709F0 780 aa6.78□□□□□ -1.32
VPS53-219ENST00000576019 DPP9Q86TI2 863 aa6.78□□□□□ -1.32
VPS53-219ENST00000576019 KCNH5Q8NCM2 988 aa6.78□□□□□ -1.32
VPS53-219ENST00000576019 NAXEQ8NCW5 288 aa6.78□□□□□ -1.32
VPS53-219ENST00000576019 SSH1Q8WYL5 1049 aa6.78□□□□□ -1.32
VPS53-219ENST00000576019 RTF1Q92541 710 aaKnown RBP6.78□□□□□ -1.32
VPS53-219ENST00000576019 COA7Q96BR5 231 aa6.78□□□□□ -1.32
VPS53-219ENST00000576019 PPM1MQ96MI6 270 aa6.78□□□□□ -1.32
VPS53-219ENST00000576019 CGRRF1Q99675 332 aa6.78□□□□□ -1.32
VPS53-219ENST00000576019 SLC12A9Q9BXP2 914 aa6.78□□□□□ -1.32
VPS53-219ENST00000576019 ANO3Q9BYT9 981 aa6.78□□□□□ -1.32
VPS53-219ENST00000576019 ASCC2Q9H1I8 757 aaPredicted RBP6.78□□□□□ -1.32
VPS53-219ENST00000576019 GSX1Q9H4S2 264 aaPredicted RBP6.78□□□□□ -1.32
VPS53-219ENST00000576019 EPHX3Q9H6B9 360 aa6.78□□□□□ -1.32
VPS53-219ENST00000576019 PCDHGB2Q9Y5G2 931 aa6.78□□□□□ -1.32
VPS53-219ENST00000576019 ITGB4P16144 1822 aa6.78□□□□□ -1.32
VPS53-219ENST00000576019 CNTNAP4Q9C0A0 1308 aa6.77□□□□□ -1.32
VPS53-219ENST00000576019 LTN1O94822 1766 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 LAMB2P55268 1798 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 COL11A2P13942 1736 aaPredicted RBP6.77□□□□□ -1.33
VPS53-219ENST00000576019 NPHP3-ACAD11A0A0J9YXS1 232 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 SCDO00767 359 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 NCAM2O15394 837 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 WIPF1O43516 503 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 MYO1BO43795 1136 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 HIP1RO75146 1068 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 PAMP19021 973 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 COPB2P35606 906 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 CASP5P51878 434 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 MAPK10P53779 464 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 BLMHQ13867 455 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 IFI16Q16666 785 aaKnown RBP6.77□□□□□ -1.33
VPS53-219ENST00000576019 ANO6Q4KMQ2 910 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 FAM209BQ5JX69 171 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 IQCEQ6IPM2 695 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 RCSD1Q6JBY9 416 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 CFAP161Q6P656 301 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 C1orf122Q6ZSJ8 110 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 KIAA1211Q6ZU35 1233 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 CXorf67Q86X51 503 aaPredicted RBP6.77□□□□□ -1.33
VPS53-219ENST00000576019 CPNE8Q86YQ8 564 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 RASAL3Q86YV0 1011 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 NOSTRINQ8IVI9 506 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 PRR18Q8N4B5 295 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 C12orf50Q8NA57 414 aaPredicted RBP6.77□□□□□ -1.33
VPS53-219ENST00000576019 DTWD2Q8NBA8 298 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 C2CD4AQ8NCU7 369 aaPredicted RBP6.77□□□□□ -1.33
VPS53-219ENST00000576019 SMG8Q8ND04 991 aaKnown RBP6.77□□□□□ -1.33
VPS53-219ENST00000576019 IRF7Q92985 503 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 EAF2Q96CJ1 260 aaPredicted RBP6.77□□□□□ -1.33
VPS53-219ENST00000576019 ZNF496Q96IT1 587 aaPredicted RBP6.77□□□□□ -1.33
VPS53-219ENST00000576019 JAM3Q9BX67 310 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 RNF208Q9H0X6 261 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 R3HDMLQ9H3Y0 253 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 C14orf93Q9H972 538 aaKnown RBP6.77□□□□□ -1.33
VPS53-219ENST00000576019 SUGCTQ9HAC7 445 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 GBA2Q9HCG7 927 aaPredicted RBP6.77□□□□□ -1.33
VPS53-219ENST00000576019 MBIPQ9NS73 344 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 CLDND1Q9NY35 253 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 DAGLAQ9Y4D2 1042 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 SNX13Q9Y5W8 968 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 KDM3BQ7LBC6 1761 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 ARFGEF2Q9Y6D5 1785 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 CACNA1SQ13698 1873 aa6.77□□□□□ -1.33
VPS53-219ENST00000576019 USP42Q9H9J4 1324 aaKnown RBP6.76□□□□□ -1.33
VPS53-219ENST00000576019 A6NCN8 305 aa6.76□□□□□ -1.33
VPS53-219ENST00000576019 PPFIA3O75145 1194 aa6.76□□□□□ -1.33
VPS53-219ENST00000576019 MBD4O95243 580 aa6.76□□□□□ -1.33
VPS53-219ENST00000576019 TIAF1O95411 115 aa6.76□□□□□ -1.33
VPS53-219ENST00000576019 GSTM1P09488 218 aa6.76□□□□□ -1.33
VPS53-219ENST00000576019 GNAT1P11488 350 aa6.76□□□□□ -1.33
VPS53-219ENST00000576019 NOP2P46087 812 aaKnown RBP6.76□□□□□ -1.33
VPS53-219ENST00000576019 MAP2K3P46734 347 aa6.76□□□□□ -1.33
VPS53-219ENST00000576019 ICA1Q05084 483 aa6.76□□□□□ -1.33
VPS53-219ENST00000576019 PPFIA1Q13136 1202 aa6.76□□□□□ -1.33
VPS53-219ENST00000576019 G3BP1Q13283 466 aaKnown RBP eCLIP6.76□□□□□ -1.33
VPS53-219ENST00000576019 LSAMPQ13449 338 aa6.76□□□□□ -1.33
VPS53-219ENST00000576019 GPR19Q15760 415 aa6.76□□□□□ -1.33
VPS53-219ENST00000576019 UGT8Q16880 541 aa6.76□□□□□ -1.33
VPS53-219ENST00000576019 CPEB4Q17RY0 729 aaKnown RBP eCLIP6.76□□□□□ -1.33
VPS53-219ENST00000576019 IZUMO3Q5VZ72 239 aa6.76□□□□□ -1.33
VPS53-219ENST00000576019 EEF1DP3Q658K8 133 aa6.76□□□□□ -1.33
VPS53-219ENST00000576019 CCDC62Q6P9F0 684 aa6.76□□□□□ -1.33
VPS53-219ENST00000576019 HHIPL2Q6UWX4 724 aa6.76□□□□□ -1.33
VPS53-219ENST00000576019 SLCO4C1Q6ZQN7 724 aa6.76□□□□□ -1.33
VPS53-219ENST00000576019 ARHGAP36Q6ZRI8 547 aa6.76□□□□□ -1.33
VPS53-219ENST00000576019 KCNK18Q7Z418 384 aa6.76□□□□□ -1.33
VPS53-219ENST00000576019 LIX1LQ8IVB5 337 aa6.76□□□□□ -1.33
VPS53-219ENST00000576019 TBC1D20Q96BZ9 403 aa6.76□□□□□ -1.33
VPS53-219ENST00000576019 Q96M66 194 aa6.76□□□□□ -1.33
VPS53-219ENST00000576019 ASB2Q96Q27 587 aa6.76□□□□□ -1.33
VPS53-219ENST00000576019 HDAC8Q9BY41 377 aa6.76□□□□□ -1.33
VPS53-219ENST00000576019 CDIP1Q9H305 208 aa6.76□□□□□ -1.33
VPS53-219ENST00000576019 SEMA4AQ9H3S1 761 aa6.76□□□□□ -1.33
VPS53-219ENST00000576019 CARMIL3Q8ND23 1372 aa6.76□□□□□ -1.33
VPS53-219ENST00000576019 FAM208AQ9UK61 1670 aaKnown RBP6.76□□□□□ -1.33
VPS53-219ENST00000576019 SLX4Q8IY92 1834 aa6.76□□□□□ -1.33
VPS53-219ENST00000576019 COL5A3P25940 1745 aaPredicted RBP6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms