RNA–Protein interactions for RNA: ENST00000575454.1

SMG6-218, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 652 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-218ENST00000575454 LIN9Q5TKA1 542 aa10.04□□□□□ -0.8
SMG6-218ENST00000575454 GALNT17Q6IS24 598 aa10.04□□□□□ -0.8
SMG6-218ENST00000575454 PDXDC1Q6P996 788 aa10.04□□□□□ -0.8
SMG6-218ENST00000575454 TRIM22Q8IYM9 498 aa10.04□□□□□ -0.8
SMG6-218ENST00000575454 MAML2Q8IZL2 1156 aaPredicted RBP10.04□□□□□ -0.8
SMG6-218ENST00000575454 FBXL16Q8N461 479 aa10.04□□□□□ -0.8
SMG6-218ENST00000575454 RNF149Q8NC42 400 aa10.04□□□□□ -0.8
SMG6-218ENST00000575454 SMG8Q8ND04 991 aaKnown RBP10.04□□□□□ -0.8
SMG6-218ENST00000575454 MBOAT7Q96N66 472 aa10.04□□□□□ -0.8
SMG6-218ENST00000575454 CNTNAP3BQ96NU0 1288 aa10.04□□□□□ -0.8
SMG6-218ENST00000575454 GAD1Q99259 594 aa10.04□□□□□ -0.8
SMG6-218ENST00000575454 SH2D3AQ9BRG2 576 aa10.04□□□□□ -0.8
SMG6-218ENST00000575454 DDX23Q9BUQ8 820 aaKnown RBP10.04□□□□□ -0.8
SMG6-218ENST00000575454 FAM126AQ9BYI3 521 aaPredicted RBP10.04□□□□□ -0.8
SMG6-218ENST00000575454 CNTNAP3Q9BZ76 1288 aa10.04□□□□□ -0.8
SMG6-218ENST00000575454 FOXQ1Q9C009 403 aa10.04□□□□□ -0.8
SMG6-218ENST00000575454 TRIM6Q9C030 488 aaPredicted RBP10.04□□□□□ -0.8
SMG6-218ENST00000575454 DHX33Q9H6R0 707 aaKnown RBP10.04□□□□□ -0.8
SMG6-218ENST00000575454 ZSCAN32Q9NX65 697 aa10.04□□□□□ -0.8
SMG6-218ENST00000575454 CDV3Q9UKY7 258 aaKnown RBP10.04□□□□□ -0.8
SMG6-218ENST00000575454 MRPS17Q9Y2R5 130 aaKnown RBP10.04□□□□□ -0.8
SMG6-218ENST00000575454 IPPQ9Y573 584 aa10.04□□□□□ -0.8
SMG6-218ENST00000575454 PLXNA4Q9HCM2 1894 aa10.04□□□□□ -0.8
SMG6-218ENST00000575454 KAT6AQ92794 2004 aa10.04□□□□□ -0.8
SMG6-218ENST00000575454 EDIL3O43854 480 aa10.03□□□□□ -0.8
SMG6-218ENST00000575454 POU2F2P09086 479 aa10.03□□□□□ -0.8
SMG6-218ENST00000575454 MYBP10242 640 aa10.03□□□□□ -0.8
SMG6-218ENST00000575454 GLULP15104 373 aa10.03□□□□□ -0.8
SMG6-218ENST00000575454 IFNAR1P17181 557 aa10.03□□□□□ -0.8
SMG6-218ENST00000575454 HOXA9P31269 272 aa10.03□□□□□ -0.8
SMG6-218ENST00000575454 SCNN1GP51170 649 aa10.03□□□□□ -0.8
SMG6-218ENST00000575454 ATXN1P54253 815 aaKnown RBP10.03□□□□□ -0.8
SMG6-218ENST00000575454 POU5F1BQ06416 359 aa10.03□□□□□ -0.8
SMG6-218ENST00000575454 TFDP1Q14186 410 aa10.03□□□□□ -0.8
SMG6-218ENST00000575454 ADCK5Q3MIX3 580 aa10.03□□□□□ -0.8
SMG6-218ENST00000575454 ZBTB41Q5SVQ8 909 aa10.03□□□□□ -0.8
SMG6-218ENST00000575454 PLA2G4FQ68DD2 849 aa10.03□□□□□ -0.8
SMG6-218ENST00000575454 FUT10Q6P4F1 479 aa10.03□□□□□ -0.8
SMG6-218ENST00000575454 PARM1Q6UWI2 310 aa10.03□□□□□ -0.8
SMG6-218ENST00000575454 RTL10Q7L3V2 364 aa10.03□□□□□ -0.8
SMG6-218ENST00000575454 RASEFQ8IZ41 740 aa10.03□□□□□ -0.8
SMG6-218ENST00000575454 ETNPPLQ8TBG4 499 aa10.03□□□□□ -0.8
SMG6-218ENST00000575454 BRF1Q92994 677 aa10.03□□□□□ -0.8
SMG6-218ENST00000575454 GJA10Q969M2 543 aa10.03□□□□□ -0.8
SMG6-218ENST00000575454 TMEM143Q96AN5 459 aa10.03□□□□□ -0.8
SMG6-218ENST00000575454 FAM20AQ96MK3 541 aa10.03□□□□□ -0.8
SMG6-218ENST00000575454 RTKNQ9BST9 563 aa10.03□□□□□ -0.8
SMG6-218ENST00000575454 SLC26A6Q9BXS9 759 aa10.03□□□□□ -0.8
SMG6-218ENST00000575454 CSRNP2Q9H175 543 aa10.03□□□□□ -0.8
SMG6-218ENST00000575454 EPC1Q9H2F5 836 aa10.03□□□□□ -0.8
SMG6-218ENST00000575454 SLKQ9H2G2 1235 aaPredicted RBP10.03□□□□□ -0.8
SMG6-218ENST00000575454 MINDY3Q9H8M7 445 aa10.03□□□□□ -0.8
SMG6-218ENST00000575454 VPS54Q9P1Q0 977 aa10.03□□□□□ -0.8
SMG6-218ENST00000575454 DDX25Q9UHL0 483 aaKnown RBP10.03□□□□□ -0.8
SMG6-218ENST00000575454 ADAM28Q9UKQ2 775 aa10.03□□□□□ -0.8
SMG6-218ENST00000575454 KCNH3Q9ULD8 1083 aa10.03□□□□□ -0.8
SMG6-218ENST00000575454 PCDHA4Q9UN74 947 aa10.03□□□□□ -0.8
SMG6-218ENST00000575454 SF3B1O75533 1304 aaKnown RBP eCLIP10.03□□□□□ -0.85e-6■■■■■ 39
SMG6-218ENST00000575454 OTOGLQ3ZCN5 2332 aa10.02□□□□□ -0.8
SMG6-218ENST00000575454 NID2Q14112 1375 aa10.02□□□□□ -0.8
SMG6-218ENST00000575454 ZMYM2Q9UBW7 1377 aa10.02□□□□□ -0.8
SMG6-218ENST00000575454 POTEMA6NI47 508 aa10.02□□□□□ -0.81
SMG6-218ENST00000575454 TSPAN1O60635 241 aa10.02□□□□□ -0.81
SMG6-218ENST00000575454 TDP2O95551 362 aa10.02□□□□□ -0.81
SMG6-218ENST00000575454 YWHABP31946 246 aaKnown RBP10.02□□□□□ -0.81
SMG6-218ENST00000575454 RPS9P46781 194 aaKnown RBP10.02□□□□□ -0.81
SMG6-218ENST00000575454 NRLP54845 237 aa10.02□□□□□ -0.81
SMG6-218ENST00000575454 NPEPPSP55786 919 aa10.02□□□□□ -0.81
SMG6-218ENST00000575454 PTENP60484 403 aa10.02□□□□□ -0.81
SMG6-218ENST00000575454 GRIK3Q13003 919 aa10.02□□□□□ -0.81
SMG6-218ENST00000575454 PPP2R5CQ13362 524 aa10.02□□□□□ -0.81
SMG6-218ENST00000575454 PPP2R5DQ14738 602 aa10.02□□□□□ -0.81
SMG6-218ENST00000575454 UBXN2BQ14CS0 331 aa10.02□□□□□ -0.81
SMG6-218ENST00000575454 UVSSAQ2YD98 709 aa10.02□□□□□ -0.81
SMG6-218ENST00000575454 PPM1LQ5SGD2 360 aa10.02□□□□□ -0.81
SMG6-218ENST00000575454 POTEGQ6S5H5 508 aa10.02□□□□□ -0.81
SMG6-218ENST00000575454 ZNF852Q6ZMS4 543 aa10.02□□□□□ -0.81
SMG6-218ENST00000575454 Q6ZUG5 572 aa10.02□□□□□ -0.81
SMG6-218ENST00000575454 GRASPQ7Z6J2 395 aaPredicted RBP10.02□□□□□ -0.81
SMG6-218ENST00000575454 FERMT3Q86UX7 667 aa10.02□□□□□ -0.81
SMG6-218ENST00000575454 C4orf19Q8IY42 314 aa10.02□□□□□ -0.81
SMG6-218ENST00000575454 ZBTB44Q8NCP5 570 aa10.02□□□□□ -0.81
SMG6-218ENST00000575454 FGF13Q92913 245 aa10.02□□□□□ -0.81
SMG6-218ENST00000575454 FGF14Q92915 247 aa10.02□□□□□ -0.81
SMG6-218ENST00000575454 CLDN23Q96B33 292 aa10.02□□□□□ -0.81
SMG6-218ENST00000575454 ZFP42Q96MM3 310 aa10.02□□□□□ -0.81
SMG6-218ENST00000575454 NAP1L4Q99733 375 aaKnown RBP10.02□□□□□ -0.81
SMG6-218ENST00000575454 TTPALQ9BTX7 342 aa10.02□□□□□ -0.81
SMG6-218ENST00000575454 EIF2AQ9BY44 585 aaKnown RBP10.02□□□□□ -0.81
SMG6-218ENST00000575454 GPR62Q9BZJ7 368 aa10.02□□□□□ -0.81
SMG6-218ENST00000575454 RNF39Q9H2S5 420 aa10.02□□□□□ -0.81
SMG6-218ENST00000575454 DAXXQ9UER7 740 aaPredicted RBP10.02□□□□□ -0.81
SMG6-218ENST00000575454 FBXW11Q9UKB1 542 aa10.02□□□□□ -0.81
SMG6-218ENST00000575454 GMEB2Q9UKD1 530 aa10.02□□□□□ -0.81
SMG6-218ENST00000575454 SMG5Q9UPR3 1016 aaKnown RBP10.02□□□□□ -0.81
SMG6-218ENST00000575454 FNDC1Q4ZHG4 1894 aaPredicted RBP10.02□□□□□ -0.81
SMG6-218ENST00000575454 ZZEF1O43149 2961 aa10.02□□□□□ -0.81
SMG6-218ENST00000575454 FASNP49327 2511 aaKnown RBP10.01□□□□□ -0.81
SMG6-218ENST00000575454 KIAA1671Q9BY89 1806 aa10.01□□□□□ -0.81
SMG6-218ENST00000575454 INO80B-WBP1J3KQ70 363 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms