RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 FAM182BQ5T319 152 aa11.54□□□□□ -0.56
CCDC40-207ENST00000572253 PADI6Q6TGC4 694 aa11.54□□□□□ -0.56
CCDC40-207ENST00000572253 CRELD2Q6UXH1 353 aaPredicted RBP11.54□□□□□ -0.56
CCDC40-207ENST00000572253 MIGA2Q7L4E1 593 aa11.54□□□□□ -0.56
CCDC40-207ENST00000572253 PPM1KQ8N3J5 372 aa11.54□□□□□ -0.56
CCDC40-207ENST00000572253 FIZ1Q96SL8 496 aa11.54□□□□□ -0.56
CCDC40-207ENST00000572253 GTF3C4Q9UKN8 822 aa11.54□□□□□ -0.56
CCDC40-207ENST00000572253 PCDHA3Q9Y5H8 950 aa11.54□□□□□ -0.56
CCDC40-207ENST00000572253 ZBTB39O15060 712 aa11.53□□□□□ -0.56
CCDC40-207ENST00000572253 SNX3O60493 162 aa11.53□□□□□ -0.56
CCDC40-207ENST00000572253 ACSL3O95573 720 aa11.53□□□□□ -0.56
CCDC40-207ENST00000572253 RARAP10276 462 aa11.53□□□□□ -0.56
CCDC40-207ENST00000572253 ITIH2P19823 946 aa11.53□□□□□ -0.56
CCDC40-207ENST00000572253 POLD1P28340 1107 aa11.53□□□□□ -0.56
CCDC40-207ENST00000572253 TATDN1Q6P1N9 297 aa11.53□□□□□ -0.56
CCDC40-207ENST00000572253 SYDE1Q6ZW31 735 aaPredicted RBP11.53□□□□□ -0.56
CCDC40-207ENST00000572253 KIAA0825Q8IV33 1275 aa11.53□□□□□ -0.56
CCDC40-207ENST00000572253 ANKRD42Q8N9B4 389 aa11.53□□□□□ -0.56
CCDC40-207ENST00000572253 IWS1Q96ST2 819 aa11.53□□□□□ -0.56
CCDC40-207ENST00000572253 NKIRAS1Q9NYS0 192 aa11.53□□□□□ -0.56
CCDC40-207ENST00000572253 MRPL11Q9Y3B7 192 aaKnown RBP11.53□□□□□ -0.56
CCDC40-207ENST00000572253 AFF2P51816 1311 aa11.53□□□□□ -0.56
CCDC40-207ENST00000572253 BTAF1O14981 1849 aa11.53□□□□□ -0.56
CCDC40-207ENST00000572253 TAL1P17542 331 aaPredicted RBP11.53□□□□□ -0.56
CCDC40-207ENST00000572253 KCNJ1P48048 391 aa11.53□□□□□ -0.56
CCDC40-207ENST00000572253 CAV1Q03135 178 aa11.53□□□□□ -0.56
CCDC40-207ENST00000572253 SHROOM1Q2M3G4 852 aaPredicted RBP11.53□□□□□ -0.56
CCDC40-207ENST00000572253 C12orf50Q8NA57 414 aaPredicted RBP11.53□□□□□ -0.56
CCDC40-207ENST00000572253 LMO3Q8TAP4 145 aa11.53□□□□□ -0.56
CCDC40-207ENST00000572253 CDC42EP4Q9H3Q1 356 aaKnown RBP11.53□□□□□ -0.56
CCDC40-207ENST00000572253 ARHGEF10LQ9HCE6 1279 aa11.53□□□□□ -0.56
CCDC40-207ENST00000572253 TMEM120BA0PK00 339 aa11.53□□□□□ -0.56
CCDC40-207ENST00000572253 TCP11X1B4DZS4 312 aa11.53□□□□□ -0.56
CCDC40-207ENST00000572253 SGPL1O95470 568 aa11.53□□□□□ -0.56
CCDC40-207ENST00000572253 GH2P01242 217 aa11.53□□□□□ -0.56
CCDC40-207ENST00000572253 KRT17Q04695 432 aa11.53□□□□□ -0.56
CCDC40-207ENST00000572253 RASA3Q14644 834 aa11.53□□□□□ -0.56
CCDC40-207ENST00000572253 LONRF1Q17RB8 773 aa11.53□□□□□ -0.56
CCDC40-207ENST00000572253 EPC2Q52LR7 807 aa11.53□□□□□ -0.56
CCDC40-207ENST00000572253 NUGGCQ68CJ6 796 aa11.53□□□□□ -0.56
CCDC40-207ENST00000572253 SLC30A10Q6XR72 485 aa11.53□□□□□ -0.56
CCDC40-207ENST00000572253 MAEAQ7L5Y9 396 aa11.53□□□□□ -0.56
CCDC40-207ENST00000572253 MIER3Q7Z3K6 550 aa11.53□□□□□ -0.56
CCDC40-207ENST00000572253 FAM228AQ86W67 206 aa11.53□□□□□ -0.56
CCDC40-207ENST00000572253 SPICE1Q8N0Z3 855 aa11.53□□□□□ -0.56
CCDC40-207ENST00000572253 IDI2Q9BXS1 227 aa11.53□□□□□ -0.56
CCDC40-207ENST00000572253 UNC45AQ9H3U1 944 aa11.53□□□□□ -0.56
CCDC40-207ENST00000572253 MAPTP10636 758 aaKnown RBP11.52□□□□□ -0.56
CCDC40-207ENST00000572253 UBXN2AP68543 259 aa11.52□□□□□ -0.56
CCDC40-207ENST00000572253 MKRN3Q13064 507 aaKnown RBP11.52□□□□□ -0.56
CCDC40-207ENST00000572253 CCDC174Q6PII3 467 aa11.52□□□□□ -0.56
CCDC40-207ENST00000572253 OTUD6AQ7L8S5 288 aa11.52□□□□□ -0.56
CCDC40-207ENST00000572253 EXOC3L1Q86VI1 746 aa11.52□□□□□ -0.56
CCDC40-207ENST00000572253 SIAH1Q8IUQ4 282 aa11.52□□□□□ -0.56
CCDC40-207ENST00000572253 EPS8L1Q8TE68 723 aa11.52□□□□□ -0.56
CCDC40-207ENST00000572253 KLHL29Q96CT2 875 aa11.52□□□□□ -0.56
CCDC40-207ENST00000572253 SNF8Q96H20 258 aa11.52□□□□□ -0.56
CCDC40-207ENST00000572253 TRIM7Q9C029 511 aa11.52□□□□□ -0.56
CCDC40-207ENST00000572253 LRRC19Q9H756 370 aa11.52□□□□□ -0.56
CCDC40-207ENST00000572253 ECT2Q9H8V3 914 aa11.52□□□□□ -0.56
CCDC40-207ENST00000572253 KCNQ5Q9NR82 932 aa11.52□□□□□ -0.56
CCDC40-207ENST00000572253 DONSONQ9NYP3 566 aa11.52□□□□□ -0.56
CCDC40-207ENST00000572253 ARL2BPQ9Y2Y0 163 aa11.52□□□□□ -0.56
CCDC40-207ENST00000572253 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.52□□□□□ -0.56
CCDC40-207ENST00000572253 CYP26A1O43174 497 aa11.52□□□□□ -0.57
CCDC40-207ENST00000572253 ATMINO43313 823 aaPredicted RBP11.52□□□□□ -0.57
CCDC40-207ENST00000572253 THAP12O43422 761 aa11.52□□□□□ -0.57
CCDC40-207ENST00000572253 ATF2P15336 505 aa11.52□□□□□ -0.57
CCDC40-207ENST00000572253 STX2P32856 288 aa11.52□□□□□ -0.57
CCDC40-207ENST00000572253 PPP3CAQ08209 521 aa11.52□□□□□ -0.57
CCDC40-207ENST00000572253 LRRC14Q15048 493 aa11.52□□□□□ -0.57
CCDC40-207ENST00000572253 BANK1Q8NDB2 785 aa11.52□□□□□ -0.57
CCDC40-207ENST00000572253 ABCF3Q9NUQ8 709 aa11.52□□□□□ -0.57
CCDC40-207ENST00000572253 FGFR1OP2Q9NVK5 253 aa11.52□□□□□ -0.57
CCDC40-207ENST00000572253 HSPBP1Q9NZL4 362 aa11.52□□□□□ -0.57
CCDC40-207ENST00000572253 O00370 1275 aa11.52□□□□□ -0.57
CCDC40-207ENST00000572253 UBOX5O94941 541 aa11.52□□□□□ -0.57
CCDC40-207ENST00000572253 CYP1A2P05177 515 aa11.52□□□□□ -0.57
CCDC40-207ENST00000572253 DLATP10515 647 aaKnown RBP11.52□□□□□ -0.57
CCDC40-207ENST00000572253 NQO1P15559 274 aaKnown RBP11.52□□□□□ -0.57
CCDC40-207ENST00000572253 DLG4P78352 724 aa11.52□□□□□ -0.57
CCDC40-207ENST00000572253 LACTBP83111 547 aaPredicted RBP11.52□□□□□ -0.57
CCDC40-207ENST00000572253 CEP128Q6ZU80 1094 aa11.52□□□□□ -0.57
CCDC40-207ENST00000572253 SPATA21Q7Z572 469 aa11.52□□□□□ -0.57
CCDC40-207ENST00000572253 USP37Q86T82 979 aa11.52□□□□□ -0.57
CCDC40-207ENST00000572253 C12orf56Q8IXR9 622 aa11.52□□□□□ -0.57
CCDC40-207ENST00000572253 FAM71AQ8IYT1 594 aa11.52□□□□□ -0.57
CCDC40-207ENST00000572253 CHURC1Q8WUH1 139 aa11.52□□□□□ -0.57
CCDC40-207ENST00000572253 CHORDC1Q9UHD1 332 aaPredicted RBP11.52□□□□□ -0.57
CCDC40-207ENST00000572253 EXOC7Q9UPT5 735 aa11.52□□□□□ -0.57
CCDC40-207ENST00000572253 UBAP1LF5GYI3 381 aa11.52□□□□□ -0.57
CCDC40-207ENST00000572253 CLDN3O15551 220 aa11.52□□□□□ -0.57
CCDC40-207ENST00000572253 SNRPFP62306 86 aaKnown RBP11.52□□□□□ -0.57
CCDC40-207ENST00000572253 ARHGEF18Q6ZSZ5 1173 aa11.52□□□□□ -0.57
CCDC40-207ENST00000572253 PODNQ7Z5L7 613 aa11.52□□□□□ -0.57
CCDC40-207ENST00000572253 NOP9Q86U38 636 aaKnown RBP11.52□□□□□ -0.57
CCDC40-207ENST00000572253 BBOF1Q8ND07 529 aa11.52□□□□□ -0.57
CCDC40-207ENST00000572253 PCDHB18PQ96TA0 734 aa11.52□□□□□ -0.57
CCDC40-207ENST00000572253 MRIQ9BWK5 157 aa11.52□□□□□ -0.57
CCDC40-207ENST00000572253 KLHL14Q9P2G3 628 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms