RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 SLC7A3Q8WY07 619 aa10.71□□□□□ -0.69
VPS53-206ENST00000570359 C12orf42Q96LP6 360 aa10.71□□□□□ -0.69
VPS53-206ENST00000570359 GINM1Q9NU53 330 aa10.71□□□□□ -0.69
VPS53-206ENST00000570359 FBXO40Q9UH90 709 aa10.71□□□□□ -0.69
VPS53-206ENST00000570359 AMACRQ9UHK6 382 aa10.71□□□□□ -0.69
VPS53-206ENST00000570359 MCM3APO60318 1980 aa10.71□□□□□ -0.7
VPS53-206ENST00000570359 NOP56O00567 594 aaKnown RBP10.71□□□□□ -0.7
VPS53-206ENST00000570359 RNF40O75150 1001 aa10.71□□□□□ -0.7
VPS53-206ENST00000570359 STBD1O95210 358 aa10.71□□□□□ -0.7
VPS53-206ENST00000570359 ARIH2O95376 493 aa10.71□□□□□ -0.7
VPS53-206ENST00000570359 FGGP02679 453 aa10.71□□□□□ -0.7
VPS53-206ENST00000570359 EDN1P05305 212 aa10.71□□□□□ -0.7
VPS53-206ENST00000570359 FDX1P10109 184 aa10.71□□□□□ -0.7
VPS53-206ENST00000570359 PIK3CAP42336 1068 aa10.71□□□□□ -0.7
VPS53-206ENST00000570359 GHRHRQ02643 423 aa10.71□□□□□ -0.7
VPS53-206ENST00000570359 ALCAMQ13740 583 aa10.71□□□□□ -0.7
VPS53-206ENST00000570359 IFI16Q16666 785 aaKnown RBP10.71□□□□□ -0.7
VPS53-206ENST00000570359 KRT39Q6A163 491 aa10.71□□□□□ -0.7
VPS53-206ENST00000570359 LRRC57Q8N9N7 239 aa10.71□□□□□ -0.7
VPS53-206ENST00000570359 OLIG1Q8TAK6 271 aa10.71□□□□□ -0.7
VPS53-206ENST00000570359 TSKSQ9UJT2 592 aa10.71□□□□□ -0.7
VPS53-206ENST00000570359 AMFRQ9UKV5 643 aa10.71□□□□□ -0.7
VPS53-206ENST00000570359 CLEC11AQ9Y240 323 aa10.71□□□□□ -0.7
VPS53-206ENST00000570359 CEP350Q5VT06 3117 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 PTPRJQ12913 1337 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 WDR81Q562E7 1941 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 K7ERI5 159 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 YBX3P16989 372 aaKnown RBP eCLIP10.7□□□□□ -0.7
VPS53-206ENST00000570359 GLRA2P23416 452 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 CYP24A1Q07973 514 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 HSDL1Q3SXM5 330 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 XKR3Q5GH77 459 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 GPD1LQ8N335 351 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 USP38Q8NB14 1042 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 MCPH1Q8NEM0 835 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 RFFLQ8WZ73 363 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 CDHR1Q96JP9 859 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 NLRP4Q96MN2 994 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 NT5C1BQ96P26 610 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 FAM204AQ9H8W3 233 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 ADARB2Q9NS39 739 aaKnown RBP10.7□□□□□ -0.7
VPS53-206ENST00000570359 RAB20Q9NX57 234 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 ADAM21Q9UKJ8 722 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 ADAMTS5Q9UNA0 930 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 NR2E1Q9Y466 385 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 GOLGA6BA6NDN3 693 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 ATP8B1O43520 1251 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 IREB2P48200 963 aaKnown RBP10.7□□□□□ -0.7
VPS53-206ENST00000570359 OAZ1P54368 228 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 NFIL3Q16649 462 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 ZNF394Q53GI3 561 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 KCTD16Q68DU8 428 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 LBX2Q6XYB7 198 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 FBXL13Q8NEE6 735 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 EPS8L1Q8TE68 723 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 CASKIN2Q8WXE0 1202 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 CPA5Q8WXQ8 436 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 KRT35Q92764 455 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 ZNF653Q96CK0 615 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 OPTNQ96CV9 577 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 CDCA5Q96FF9 252 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 IWS1Q96ST2 819 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 MSTO1Q9BUK6 570 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 PDGFCQ9NRA1 345 aa10.7□□□□□ -0.7
VPS53-206ENST00000570359 AGO2Q9UKV8 859 aaKnown RBP10.7□□□□□ -0.7
VPS53-206ENST00000570359 SYNGAP1Q96PV0 1343 aa10.69□□□□□ -0.7
VPS53-206ENST00000570359 TARSL2A2RTX5 802 aaKnown RBP10.69□□□□□ -0.7
VPS53-206ENST00000570359 PGRMC1O00264 195 aaKnown RBP10.69□□□□□ -0.7
VPS53-206ENST00000570359 CCDC172P0C7W6 258 aa10.69□□□□□ -0.7
VPS53-206ENST00000570359 PRLRP16471 622 aa10.69□□□□□ -0.7
VPS53-206ENST00000570359 MCM3P25205 808 aa10.69□□□□□ -0.7
VPS53-206ENST00000570359 TNFSF9P41273 254 aa10.69□□□□□ -0.7
VPS53-206ENST00000570359 PDE6CP51160 858 aa10.69□□□□□ -0.7
VPS53-206ENST00000570359 STAT5BP51692 787 aa10.69□□□□□ -0.7
VPS53-206ENST00000570359 MFAP3P55082 362 aa10.69□□□□□ -0.7
VPS53-206ENST00000570359 TUBB4BP68371 445 aa10.69□□□□□ -0.7
VPS53-206ENST00000570359 C10orf76Q5T2E6 689 aa10.69□□□□□ -0.7
VPS53-206ENST00000570359 SCARA5Q6ZMJ2 495 aa10.69□□□□□ -0.7
VPS53-206ENST00000570359 NT5DC3Q86UY8 548 aa10.69□□□□□ -0.7
VPS53-206ENST00000570359 GOLGA6L1Q8N7Z2 621 aa10.69□□□□□ -0.7
VPS53-206ENST00000570359 RUFY1Q96T51 708 aa10.69□□□□□ -0.7
VPS53-206ENST00000570359 TRIM51Q9BSJ1 452 aa10.69□□□□□ -0.7
VPS53-206ENST00000570359 HAPLN2Q9GZV7 340 aa10.69□□□□□ -0.7
VPS53-206ENST00000570359 ACBD3Q9H3P7 528 aa10.69□□□□□ -0.7
VPS53-206ENST00000570359 FBXL5Q9UKA1 691 aa10.69□□□□□ -0.7
VPS53-206ENST00000570359 TRPC6Q9Y210 931 aa10.69□□□□□ -0.7
VPS53-206ENST00000570359 LOXHD1Q8IVV2 1947 aa10.69□□□□□ -0.7
VPS53-206ENST00000570359 ZNF233A6NK53 670 aa10.69□□□□□ -0.7
VPS53-206ENST00000570359 FARP2O94887 1054 aaPredicted RBP10.69□□□□□ -0.7
VPS53-206ENST00000570359 CD58P19256 250 aa10.69□□□□□ -0.7
VPS53-206ENST00000570359 SSR1P43307 286 aaKnown RBP10.69□□□□□ -0.7
VPS53-206ENST00000570359 TNNC1P63316 161 aa10.69□□□□□ -0.7
VPS53-206ENST00000570359 ZNF516Q92618 1163 aa10.69□□□□□ -0.7
VPS53-206ENST00000570359 PCYT2Q99447 389 aa10.69□□□□□ -0.7
VPS53-206ENST00000570359 TRIM7Q9C029 511 aa10.69□□□□□ -0.7
VPS53-206ENST00000570359 TSPYL1Q9H0U9 437 aa10.69□□□□□ -0.7
VPS53-206ENST00000570359 AZI2Q9H6S1 392 aa10.69□□□□□ -0.7
VPS53-206ENST00000570359 EFCC1Q9HA90 598 aa10.69□□□□□ -0.7
VPS53-206ENST00000570359 SPON1Q9HCB6 807 aa10.69□□□□□ -0.7
VPS53-206ENST00000570359 C1orf112Q9NSG2 853 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms