RNA–Protein interactions for RNA: ENST00000569336.2

CLN6-209, Transcript of CLN6, transmembrane ER protein, humanhuman

Gene CLN6, Length 557 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-209ENST00000569336 TMEM169Q96HH4 297 aa10.79□□□□□ -0.68
CLN6-209ENST00000569336 PYM1Q9BRP8 204 aaKnown RBP10.79□□□□□ -0.68
CLN6-209ENST00000569336 NTPCRQ9BSD7 190 aaKnown RBP10.79□□□□□ -0.68
CLN6-209ENST00000569336 APOL6Q9BWW8 343 aa10.79□□□□□ -0.68
CLN6-209ENST00000569336 LRRC27Q9C0I9 530 aa10.79□□□□□ -0.68
CLN6-209ENST00000569336 ALG13Q9NP73 1137 aaKnown RBP10.79□□□□□ -0.68
CLN6-209ENST00000569336 TFIP11Q9UBB9 837 aaKnown RBP10.79□□□□□ -0.68
CLN6-209ENST00000569336 MEIS3P2A8K0S8 358 aa10.78□□□□□ -0.68
CLN6-209ENST00000569336 K7ENM7 598 aa10.78□□□□□ -0.68
CLN6-209ENST00000569336 NR1I2O75469 434 aa10.78□□□□□ -0.68
CLN6-209ENST00000569336 GAP43P17677 238 aa10.78□□□□□ -0.68
CLN6-209ENST00000569336 ZNF131P52739 623 aa10.78□□□□□ -0.68
CLN6-209ENST00000569336 NCKAP1LP55160 1127 aa10.78□□□□□ -0.68
CLN6-209ENST00000569336 BCAR1P56945 870 aa10.78□□□□□ -0.68
CLN6-209ENST00000569336 GRIK3Q13003 919 aa10.78□□□□□ -0.68
CLN6-209ENST00000569336 FOXD4L6Q3SYB3 417 aaPredicted RBP10.78□□□□□ -0.68
CLN6-209ENST00000569336 ARSHQ5FYA8 562 aa10.78□□□□□ -0.68
CLN6-209ENST00000569336 FOXD4L3Q6VB84 417 aaPredicted RBP10.78□□□□□ -0.68
CLN6-209ENST00000569336 USP49Q70CQ1 688 aa10.78□□□□□ -0.68
CLN6-209ENST00000569336 FAM178BQ8IXR5 827 aa10.78□□□□□ -0.68
CLN6-209ENST00000569336 SLC39A11Q8N1S5 342 aa10.78□□□□□ -0.68
CLN6-209ENST00000569336 MYCT1Q8N699 235 aa10.78□□□□□ -0.68
CLN6-209ENST00000569336 TMEM161BQ8NDZ6 487 aa10.78□□□□□ -0.68
CLN6-209ENST00000569336 SPPL3Q8TCT6 385 aa10.78□□□□□ -0.68
CLN6-209ENST00000569336 ADAMTS19Q8TE59 1207 aa10.78□□□□□ -0.68
CLN6-209ENST00000569336 POF1BQ8WVV4 589 aa10.78□□□□□ -0.68
CLN6-209ENST00000569336 ATXN2LQ8WWM7 1075 aaKnown RBP10.78□□□□□ -0.68
CLN6-209ENST00000569336 MRPS27Q92552 414 aaKnown RBP10.78□□□□□ -0.68
CLN6-209ENST00000569336 KCNN1Q92952 543 aa10.78□□□□□ -0.68
CLN6-209ENST00000569336 HLA-CQ95604 372 aa10.78□□□□□ -0.68
CLN6-209ENST00000569336 TMEM175Q9BSA9 504 aa10.78□□□□□ -0.68
CLN6-209ENST00000569336 C1QTNF1Q9BXJ1 281 aa10.78□□□□□ -0.68
CLN6-209ENST00000569336 GBP3Q9H0R5 595 aa10.78□□□□□ -0.68
CLN6-209ENST00000569336 ZHX3Q9H4I2 956 aa10.78□□□□□ -0.68
CLN6-209ENST00000569336 MAGEF1Q9HAY2 307 aa10.78□□□□□ -0.68
CLN6-209ENST00000569336 TOPORSQ9NS56 1045 aaPredicted RBP10.78□□□□□ -0.68
CLN6-209ENST00000569336 FAM13BQ9NYF5 915 aa10.78□□□□□ -0.68
CLN6-209ENST00000569336 HCSTQ9UBK5 93 aa10.78□□□□□ -0.68
CLN6-209ENST00000569336 SEL1LQ9UBV2 794 aa10.78□□□□□ -0.68
CLN6-209ENST00000569336 TNFSF13BQ9Y275 285 aa10.78□□□□□ -0.68
CLN6-209ENST00000569336 HES2Q9Y543 173 aa10.78□□□□□ -0.68
CLN6-209ENST00000569336 ZNF638Q14966 1978 aaKnown RBP10.77□□□□□ -0.68
CLN6-209ENST00000569336 NPHP3-ACAD11A0A0J9YXS1 232 aa10.77□□□□□ -0.69
CLN6-209ENST00000569336 SFI1A8K8P3 1242 aa10.77□□□□□ -0.69
CLN6-209ENST00000569336 HNRNPDLO14979 420 aaKnown RBP10.77□□□□□ -0.69
CLN6-209ENST00000569336 TRAK2O60296 914 aa10.77□□□□□ -0.69
CLN6-209ENST00000569336 POMCP01189 267 aa10.77□□□□□ -0.69
CLN6-209ENST00000569336 SRGAP2BP0DMP2 458 aa10.77□□□□□ -0.69
CLN6-209ENST00000569336 MAPTP10636 758 aaKnown RBP10.77□□□□□ -0.69
CLN6-209ENST00000569336 YARSP54577 528 aaKnown RBP10.77□□□□□ -0.69
CLN6-209ENST00000569336 CACNB1Q02641 598 aaPredicted RBP10.77□□□□□ -0.69
CLN6-209ENST00000569336 DNM1Q05193 864 aaKnown RBP10.77□□□□□ -0.69
CLN6-209ENST00000569336 GIT2Q14161 759 aa10.77□□□□□ -0.69
CLN6-209ENST00000569336 NOLC1Q14978 699 aaKnown RBP eCLIP10.77□□□□□ -0.69
CLN6-209ENST00000569336 TCEAL5Q5H9L2 206 aa10.77□□□□□ -0.69
CLN6-209ENST00000569336 MPZL3Q6UWV2 235 aa10.77□□□□□ -0.69
CLN6-209ENST00000569336 ZPBP2Q6X784 338 aa10.77□□□□□ -0.69
CLN6-209ENST00000569336 HAUS6Q7Z4H7 955 aa10.77□□□□□ -0.69
CLN6-209ENST00000569336 CDR2LQ86X02 465 aaPredicted RBP10.77□□□□□ -0.69
CLN6-209ENST00000569336 PDILTQ8N807 584 aa10.77□□□□□ -0.69
CLN6-209ENST00000569336 IQUBQ8NA54 791 aa10.77□□□□□ -0.69
CLN6-209ENST00000569336 LRRC15Q8TF66 581 aa10.77□□□□□ -0.69
CLN6-209ENST00000569336 HVCN1Q96D96 273 aa10.77□□□□□ -0.69
CLN6-209ENST00000569336 BICD1Q96G01 975 aa10.77□□□□□ -0.69
CLN6-209ENST00000569336 SNX27Q96L92 541 aa10.77□□□□□ -0.69
CLN6-209ENST00000569336 SPATA32Q96LK8 384 aa10.77□□□□□ -0.69
CLN6-209ENST00000569336 ZFP42Q96MM3 310 aa10.77□□□□□ -0.69
CLN6-209ENST00000569336 UHRF1Q96T88 793 aaPredicted RBP10.77□□□□□ -0.69
CLN6-209ENST00000569336 GAD1Q99259 594 aa10.77□□□□□ -0.69
CLN6-209ENST00000569336 ACO2Q99798 780 aaKnown RBP10.77□□□□□ -0.69
CLN6-209ENST00000569336 TCHPQ9BT92 498 aa10.77□□□□□ -0.69
CLN6-209ENST00000569336 CCDC94Q9BW85 323 aaPredicted RBP10.77□□□□□ -0.69
CLN6-209ENST00000569336 SCAND2PQ9GZW5 306 aaPredicted RBP10.77□□□□□ -0.69
CLN6-209ENST00000569336 TNMDQ9H2S6 317 aa10.77□□□□□ -0.69
CLN6-209ENST00000569336 POLD4Q9HCU8 107 aa10.77□□□□□ -0.69
CLN6-209ENST00000569336 ENTPD7Q9NQZ7 604 aa10.77□□□□□ -0.69
CLN6-209ENST00000569336 ANKFY1Q9P2R3 1169 aa10.77□□□□□ -0.69
CLN6-209ENST00000569336 PARP2Q9UGN5 583 aa10.77□□□□□ -0.69
CLN6-209ENST00000569336 DOCK6Q96HP0 2047 aa10.77□□□□□ -0.69
CLN6-209ENST00000569336 MYO10Q9HD67 2058 aa10.77□□□□□ -0.69
CLN6-209ENST00000569336 DENND4CQ5VZ89 1909 aa10.76□□□□□ -0.69
CLN6-209ENST00000569336 TTLL13PA6NNM8 815 aa10.76□□□□□ -0.69
CLN6-209ENST00000569336 TOM1L1O75674 476 aa10.76□□□□□ -0.69
CLN6-209ENST00000569336 RECQL4O94761 1208 aa10.76□□□□□ -0.69
CLN6-209ENST00000569336 EDN1P05305 212 aa10.76□□□□□ -0.69
CLN6-209ENST00000569336 MCF2P10911 925 aa10.76□□□□□ -0.69
CLN6-209ENST00000569336 AKAP5P24588 427 aa10.76□□□□□ -0.69
CLN6-209ENST00000569336 DNAJB1P25685 340 aa10.76□□□□□ -0.69
CLN6-209ENST00000569336 PBX3P40426 434 aa10.76□□□□□ -0.69
CLN6-209ENST00000569336 MATR3P43243 847 aaKnown RBP eCLIP10.76□□□□□ -0.69
CLN6-209ENST00000569336 SCNN1GP51170 649 aa10.76□□□□□ -0.69
CLN6-209ENST00000569336 NUCB2P80303 420 aa10.76□□□□□ -0.69
CLN6-209ENST00000569336 MRPS5P82675 430 aaKnown RBP10.76□□□□□ -0.69
CLN6-209ENST00000569336 AMPD3Q01432 767 aa10.76□□□□□ -0.69
CLN6-209ENST00000569336 ALCAMQ13740 583 aa10.76□□□□□ -0.69
CLN6-209ENST00000569336 SMC1AQ14683 1233 aaKnown RBP10.76□□□□□ -0.69
CLN6-209ENST00000569336 KYAT1Q16773 422 aa10.76□□□□□ -0.69
CLN6-209ENST00000569336 NT5DC1Q5TFE4 455 aa10.76□□□□□ -0.69
CLN6-209ENST00000569336 DYMQ7RTS9 669 aa10.76□□□□□ -0.69
CLN6-209ENST00000569336 TAS1R3Q7RTX0 852 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms